Wall clock time and date at job start Tue Mar 31 2020 17:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47211 * 2 1 4 4 N 1.46498 * 109.46949 * 120.00178 * 2 1 3 5 5 C 1.34777 * 119.99865 * 154.99887 * 4 2 1 6 6 O 1.21288 * 119.99841 * 359.97438 * 5 4 2 7 7 C 1.50695 * 120.00387 * 180.02562 * 5 4 2 8 8 C 1.50699 * 109.47419 * 179.97438 * 7 5 4 9 9 N 1.30052 * 126.17838 * 270.01711 * 8 7 5 10 10 O 1.21278 * 110.50802 * 179.70427 * 9 8 7 11 11 C 1.34242 * 109.68566 * 0.43840 * 10 9 8 12 12 C 1.47579 * 126.68711 * 179.83365 * 11 10 9 13 13 C 1.39615 * 120.19049 * 179.68264 * 12 11 10 14 14 C 1.37880 * 119.91933 * 180.02562 * 13 12 11 15 15 C 1.38547 * 120.30962 * 0.02562 * 14 13 12 16 16 C 1.38060 * 120.39495 * 359.97438 * 15 14 13 17 17 C 1.38794 * 120.07082 * 0.02562 * 16 15 14 18 18 O 1.35568 * 120.15469 * 179.97438 * 17 16 15 19 19 C 1.34810 * 116.99959 * 354.40823 * 18 17 16 20 20 H 1.07993 * 120.00177 * 5.05956 * 19 18 17 21 21 C 1.38688 * 119.99891 * 185.06227 * 19 18 17 22 22 N 1.31528 * 119.99847 * 359.97438 * 21 19 18 23 23 Si 1.86792 * 119.99938 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47520 * 59.99608 * 23 21 19 25 25 H 1.48504 * 109.47234 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.47265 * 299.99562 * 23 21 19 27 27 N 1.32226 * 106.62449 * 359.57402 * 11 10 9 28 28 H 1.08998 * 109.46684 * 300.00264 * 1 2 3 29 29 H 1.08998 * 109.47133 * 59.99605 * 1 2 3 30 30 H 1.08999 * 109.47399 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46551 * 240.00175 * 2 1 3 32 32 H 1.09003 * 109.46873 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47394 * 300.00235 * 3 2 1 34 34 H 1.09001 * 109.46798 * 60.00269 * 3 2 1 35 35 H 0.96996 * 120.00651 * 334.99854 * 4 2 1 36 36 H 1.09005 * 109.47420 * 59.99170 * 7 5 4 37 37 H 1.09001 * 109.46895 * 300.00077 * 7 5 4 38 38 H 1.07995 * 120.04599 * 0.05114 * 13 12 11 39 39 H 1.07997 * 119.84441 * 180.02562 * 14 13 12 40 40 H 1.07997 * 119.79764 * 179.71865 * 15 14 13 41 41 H 1.07996 * 119.96382 * 180.02562 * 16 15 14 42 42 H 0.96996 * 120.00378 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 3.2403 -1.2592 1.1943 6 8 3.9355 -1.1995 0.2022 7 6 3.7425 -1.9702 2.4245 8 6 5.1237 -2.5128 2.1625 9 7 5.4087 -3.6868 1.6808 10 8 6.6095 -3.8250 1.5810 11 6 7.2299 -2.7159 2.0136 12 6 8.6862 -2.4818 2.0610 13 6 9.1871 -1.2673 2.5335 14 6 10.5487 -1.0544 2.5749 15 6 11.4238 -2.0404 2.1490 16 6 10.9426 -3.2462 1.6795 17 6 9.5750 -3.4777 1.6308 18 8 9.1006 -4.6609 1.1695 19 6 10.0021 -5.5269 0.6649 20 1 11.0566 -5.2994 0.7158 21 6 9.5754 -6.7101 0.0805 22 7 8.2912 -6.9874 0.0191 23 14 10.8247 -7.9103 -0.6180 24 1 11.7424 -8.3542 0.4619 25 1 10.1177 -9.0879 -1.1826 26 1 11.6071 -7.2429 -1.6893 27 7 6.2816 -1.8720 2.3836 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 3.1301 1.4424 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.4623 -0.7388 1.9894 36 1 3.0698 -2.7923 2.6691 37 1 3.7790 -1.2702 3.2592 38 1 8.5089 -0.4956 2.8665 39 1 10.9348 -0.1145 2.9409 40 1 12.4887 -1.8631 2.1808 41 1 11.6311 -4.0101 1.3497 42 1 7.9927 -7.8150 -0.3893 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809463131.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:39 Heat of formation + Delta-G solvation = 26.835823 kcal Electronic energy + Delta-G solvation = -27549.767811 eV Core-core repulsion = 23499.100723 eV Total energy + Delta-G solvation = -4050.667088 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -44.60356 -39.85691 -39.19480 -36.62032 -36.23953 -35.06095 -32.98763 -32.45368 -31.89283 -29.96714 -29.29394 -28.63893 -27.49094 -25.54533 -23.85238 -23.04514 -21.77940 -21.46492 -20.78643 -20.14835 -18.14868 -17.65330 -17.53160 -16.71413 -16.47191 -16.13933 -15.62422 -15.09726 -14.70530 -14.58579 -14.35998 -14.06743 -13.88852 -13.77244 -13.51911 -13.33588 -13.03343 -12.74685 -12.59097 -12.49770 -12.21064 -11.81985 -11.66089 -11.63987 -11.58396 -11.21094 -11.08441 -11.04828 -10.88639 -10.83657 -10.53515 -10.28142 -10.02232 -9.62399 -9.58197 -9.26033 -8.96260 -8.10896 -7.36838 -6.56866 -4.16083 1.28961 2.23072 2.30839 2.60491 2.87433 3.07326 3.09767 3.12412 3.25357 3.66680 3.84975 4.07046 4.44241 4.53102 4.56760 4.76438 4.84203 4.92534 4.97935 5.04941 5.17045 5.28666 5.30534 5.41868 5.50323 5.56299 5.64542 5.65778 5.80564 5.84896 5.96743 6.03272 6.14196 6.34446 6.34679 6.52904 6.60058 6.65613 6.90999 7.04967 7.15742 7.22015 7.34279 7.58147 7.82174 8.16306 8.83619 8.96820 9.46345 10.57107 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.013264 B = 0.003065 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.422915 B = 9132.132842 C =10614.489991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.136 3.864 3 C -0.164 4.164 4 N -0.730 5.730 5 C 0.520 3.480 6 O -0.519 6.519 7 C -0.042 4.042 8 C 0.168 3.832 9 N -0.386 5.386 10 O 0.119 5.881 11 C 0.261 3.739 12 C -0.131 4.131 13 C -0.011 4.011 14 C -0.224 4.224 15 C -0.046 4.046 16 C -0.232 4.232 17 C 0.176 3.824 18 O -0.145 6.145 19 C -0.398 4.398 20 H 0.098 0.902 21 C 0.045 3.955 22 N -0.835 5.835 23 Si 0.944 3.056 24 H -0.268 1.268 25 H -0.276 1.276 26 H -0.268 1.268 27 N -0.502 5.502 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.399 0.601 36 H 0.117 0.883 37 H 0.121 0.879 38 H 0.127 0.873 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.136 0.864 42 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.714 12.074 4.585 16.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.031 3.969 3 C -0.222 4.222 4 N -0.384 5.384 5 C 0.304 3.696 6 O -0.393 6.393 7 C -0.083 4.083 8 C -0.105 4.105 9 N -0.092 5.092 10 O 0.057 5.943 11 C 0.048 3.952 12 C -0.135 4.135 13 C -0.031 4.031 14 C -0.243 4.243 15 C -0.065 4.065 16 C -0.251 4.251 17 C 0.117 3.883 18 O -0.044 6.044 19 C -0.474 4.474 20 H 0.115 0.885 21 C -0.163 4.163 22 N -0.466 5.466 23 Si 0.767 3.233 24 H -0.193 1.193 25 H -0.201 1.201 26 H -0.193 1.193 27 N -0.238 5.238 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.106 0.894 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.233 0.767 36 H 0.135 0.865 37 H 0.139 0.861 38 H 0.145 0.855 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.154 0.846 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.446 11.555 3.664 16.002 hybrid contribution 0.496 -0.614 0.003 0.789 sum -9.950 10.941 3.667 15.236 Atomic orbital electron populations 1.22069 0.94113 1.02652 1.02849 1.20931 0.93847 0.93096 0.88989 1.22188 1.02448 0.95683 1.01902 1.46017 1.17795 1.57669 1.16914 1.20346 0.81311 0.78517 0.89415 1.90784 1.55661 1.58216 1.34649 1.19723 0.89395 1.01411 0.97778 1.24489 0.95847 0.89070 1.01132 1.74556 0.94838 1.20139 1.19715 1.85661 1.11949 1.36725 1.59938 1.26030 0.95793 0.81762 0.91635 1.16286 0.82678 0.96578 1.17973 1.20709 0.95354 0.93508 0.93518 1.20534 0.92592 1.00422 1.10734 1.20982 0.98893 0.92582 0.94058 1.21086 0.94571 0.99632 1.09797 1.19291 0.91618 0.85852 0.91557 1.83975 1.36500 1.20124 1.63821 1.21423 0.88979 0.98709 1.38244 0.88450 1.25404 0.97242 0.97365 0.96283 1.70061 1.13641 1.24399 1.38508 0.85742 0.79174 0.78994 0.79346 1.19257 1.20106 1.19250 1.71936 0.97150 1.29211 1.25546 0.92066 0.90961 0.91923 0.89429 0.91887 0.91710 0.92506 0.76651 0.86501 0.86092 0.85516 0.86607 0.86741 0.84647 0.91471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.99 9.38 37.16 0.35 -0.64 16 2 C 0.14 1.29 3.18 -67.93 -0.22 1.08 16 3 C -0.16 -1.51 9.48 37.16 0.35 -1.16 16 4 N -0.73 -7.22 5.08 -53.80 -0.27 -7.49 16 5 C 0.52 7.62 7.79 -10.99 -0.09 7.53 16 6 O -0.52 -10.47 15.70 5.55 0.09 -10.38 16 7 C -0.04 -0.57 6.33 -29.04 -0.18 -0.75 16 8 C 0.17 3.40 6.69 -156.57 -1.05 2.35 16 9 N -0.39 -9.14 12.15 31.21 0.38 -8.76 16 10 O 0.12 3.08 10.01 -1.92 -0.02 3.06 16 11 C 0.26 6.13 7.96 -13.90 -0.11 6.02 16 12 C -0.13 -2.90 5.89 -104.82 -0.62 -3.52 16 13 C -0.01 -0.21 9.70 -39.20 -0.38 -0.59 16 14 C -0.22 -3.67 10.03 -39.60 -0.40 -4.07 16 15 C -0.05 -0.78 10.03 -39.53 -0.40 -1.17 16 16 C -0.23 -4.70 9.16 -39.44 -0.36 -5.06 16 17 C 0.18 4.18 6.66 -38.62 -0.26 3.92 16 18 O -0.15 -4.01 8.21 -17.79 -0.15 -4.16 16 19 C -0.40 -10.62 9.49 30.90 0.29 -10.33 16 20 H 0.10 2.34 5.21 -52.49 -0.27 2.06 16 21 C 0.05 1.20 5.49 -17.52 -0.10 1.10 16 22 N -0.83 -23.99 13.67 55.48 0.76 -23.23 16 23 Si 0.94 19.73 29.55 -169.99 -5.02 14.71 16 24 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 25 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 26 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 27 N -0.50 -10.76 11.26 -10.18 -0.11 -10.88 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 1.06 7.58 -51.93 -0.39 0.67 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.40 2.49 8.60 -40.82 -0.35 2.13 16 36 H 0.12 1.27 8.14 -51.93 -0.42 0.84 16 37 H 0.12 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.13 2.14 7.88 -52.49 -0.41 1.73 16 39 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 40 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 41 H 0.14 2.66 5.64 -52.49 -0.30 2.36 16 42 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 368.67 15.07 5.56 5.56 Total: -1.00 -35.06 368.67 -7.04 -42.10 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -5.09 Total: 4.75 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: -3.16 Total: -5.28 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: 0.75 Total: -50.36 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: -0.08 Total: -11.48 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.06 -7.04 -42.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809463131.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.934 kcal (2) G-P(sol) polarization free energy of solvation -35.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds