Wall clock time and date at job start Tue Mar 31 2020 17:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47211 * 2 1 4 4 N 1.46498 * 109.46949 * 120.00178 * 2 1 3 5 5 C 1.34777 * 119.99865 * 154.99887 * 4 2 1 6 6 O 1.21288 * 119.99841 * 359.97438 * 5 4 2 7 7 C 1.50695 * 120.00387 * 180.02562 * 5 4 2 8 8 C 1.50699 * 109.47419 * 179.97438 * 7 5 4 9 9 N 1.30052 * 126.17838 * 270.01711 * 8 7 5 10 10 O 1.21278 * 110.50802 * 179.70427 * 9 8 7 11 11 C 1.34242 * 109.68566 * 0.43840 * 10 9 8 12 12 C 1.47579 * 126.68711 * 179.83365 * 11 10 9 13 13 C 1.39615 * 120.19049 * 179.68264 * 12 11 10 14 14 C 1.37880 * 119.91933 * 180.02562 * 13 12 11 15 15 C 1.38547 * 120.30962 * 0.02562 * 14 13 12 16 16 C 1.38060 * 120.39495 * 359.97438 * 15 14 13 17 17 C 1.38794 * 120.07082 * 0.02562 * 16 15 14 18 18 O 1.35568 * 120.15469 * 179.97438 * 17 16 15 19 19 C 1.34810 * 116.99959 * 354.40823 * 18 17 16 20 20 H 1.07993 * 120.00177 * 5.05956 * 19 18 17 21 21 C 1.38688 * 119.99891 * 185.06227 * 19 18 17 22 22 N 1.31528 * 119.99847 * 359.97438 * 21 19 18 23 23 Si 1.86792 * 119.99938 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47520 * 59.99608 * 23 21 19 25 25 H 1.48504 * 109.47234 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.47265 * 299.99562 * 23 21 19 27 27 N 1.32226 * 106.62449 * 359.57402 * 11 10 9 28 28 H 1.08998 * 109.46684 * 300.00264 * 1 2 3 29 29 H 1.08998 * 109.47133 * 59.99605 * 1 2 3 30 30 H 1.08999 * 109.47399 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46551 * 240.00175 * 2 1 3 32 32 H 1.09003 * 109.46873 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47394 * 300.00235 * 3 2 1 34 34 H 1.09001 * 109.46798 * 60.00269 * 3 2 1 35 35 H 0.96996 * 120.00651 * 334.99854 * 4 2 1 36 36 H 1.09005 * 109.47420 * 59.99170 * 7 5 4 37 37 H 1.09001 * 109.46895 * 300.00077 * 7 5 4 38 38 H 1.07995 * 120.04599 * 0.05114 * 13 12 11 39 39 H 1.07997 * 119.84441 * 180.02562 * 14 13 12 40 40 H 1.07997 * 119.79764 * 179.71865 * 15 14 13 41 41 H 1.07996 * 119.96382 * 180.02562 * 16 15 14 42 42 H 0.96996 * 120.00378 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 3.2403 -1.2592 1.1943 6 8 3.9355 -1.1995 0.2022 7 6 3.7425 -1.9702 2.4245 8 6 5.1237 -2.5128 2.1625 9 7 5.4087 -3.6868 1.6808 10 8 6.6095 -3.8250 1.5810 11 6 7.2299 -2.7159 2.0136 12 6 8.6862 -2.4818 2.0610 13 6 9.1871 -1.2673 2.5335 14 6 10.5487 -1.0544 2.5749 15 6 11.4238 -2.0404 2.1490 16 6 10.9426 -3.2462 1.6795 17 6 9.5750 -3.4777 1.6308 18 8 9.1006 -4.6609 1.1695 19 6 10.0021 -5.5269 0.6649 20 1 11.0566 -5.2994 0.7158 21 6 9.5754 -6.7101 0.0805 22 7 8.2912 -6.9874 0.0191 23 14 10.8247 -7.9103 -0.6180 24 1 11.7424 -8.3542 0.4619 25 1 10.1177 -9.0879 -1.1826 26 1 11.6071 -7.2429 -1.6893 27 7 6.2816 -1.8720 2.3836 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 3.1301 1.4424 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.4623 -0.7388 1.9894 36 1 3.0698 -2.7923 2.6691 37 1 3.7790 -1.2702 3.2592 38 1 8.5089 -0.4956 2.8665 39 1 10.9348 -0.1145 2.9409 40 1 12.4887 -1.8631 2.1808 41 1 11.6311 -4.0101 1.3497 42 1 7.9927 -7.8150 -0.3893 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809463131.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:38 Heat of formation + Delta-G solvation = 0.243466 kcal Electronic energy + Delta-G solvation = -27550.920942 eV Core-core repulsion = 23499.100723 eV Total energy + Delta-G solvation = -4051.820220 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -46.32861 -41.00034 -40.88827 -38.30867 -37.28715 -36.63337 -34.59167 -34.30405 -32.99085 -31.43919 -30.78240 -30.11822 -28.12252 -27.44744 -25.51559 -24.51513 -23.15828 -22.98186 -21.88850 -21.49047 -19.93581 -19.28088 -19.10434 -18.08830 -18.02740 -17.25217 -17.08719 -16.40743 -16.32911 -16.18313 -15.69268 -15.48474 -15.22357 -15.13411 -14.83714 -14.70922 -14.43101 -14.00024 -13.61581 -13.54074 -13.30963 -13.20250 -13.14606 -13.05913 -12.70158 -12.63992 -12.51288 -12.36881 -12.33970 -12.15739 -12.00946 -11.95392 -11.54871 -11.33911 -11.01804 -10.83337 -10.22710 -9.69325 -9.07265 -8.48465 -6.18169 -0.39618 0.64809 0.72013 1.35428 1.35697 1.46802 1.47675 1.52674 1.94141 2.11273 2.14614 2.61890 2.79816 3.06417 3.11378 3.30148 3.67078 3.86992 3.98235 4.08898 4.11240 4.17761 4.28271 4.28806 4.38122 4.53668 4.57795 4.69888 4.73356 4.79191 4.88448 4.91262 4.96392 5.00699 5.06361 5.13432 5.23335 5.30406 5.47180 5.50370 5.55478 5.65493 5.92864 6.08638 6.45231 6.91806 7.15988 7.20001 7.65421 8.70981 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.013264 B = 0.003065 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.422915 B = 9132.132842 C =10614.489991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.129 3.871 3 C -0.159 4.159 4 N -0.704 5.704 5 C 0.518 3.482 6 O -0.586 6.586 7 C -0.042 4.042 8 C 0.184 3.816 9 N -0.420 5.420 10 O 0.067 5.933 11 C 0.247 3.753 12 C -0.151 4.151 13 C -0.015 4.015 14 C -0.192 4.192 15 C -0.029 4.029 16 C -0.244 4.244 17 C 0.147 3.853 18 O -0.201 6.201 19 C -0.420 4.420 20 H 0.115 0.885 21 C -0.017 4.017 22 N -0.903 5.903 23 Si 1.020 2.980 24 H -0.251 1.251 25 H -0.277 1.277 26 H -0.255 1.255 27 N -0.499 5.499 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.027 0.973 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.422 0.578 36 H 0.150 0.850 37 H 0.164 0.836 38 H 0.145 0.855 39 H 0.168 0.832 40 H 0.165 0.835 41 H 0.137 0.863 42 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.114 15.328 6.454 18.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.025 3.975 3 C -0.217 4.217 4 N -0.358 5.358 5 C 0.304 3.696 6 O -0.465 6.465 7 C -0.083 4.083 8 C -0.091 4.091 9 N -0.135 5.135 10 O 0.014 5.986 11 C 0.034 3.966 12 C -0.155 4.155 13 C -0.035 4.035 14 C -0.210 4.210 15 C -0.047 4.047 16 C -0.263 4.263 17 C 0.091 3.909 18 O -0.103 6.103 19 C -0.496 4.496 20 H 0.133 0.867 21 C -0.218 4.218 22 N -0.539 5.539 23 Si 0.839 3.161 24 H -0.175 1.175 25 H -0.202 1.202 26 H -0.179 1.179 27 N -0.236 5.236 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.046 0.954 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.260 0.740 36 H 0.168 0.832 37 H 0.181 0.819 38 H 0.163 0.837 39 H 0.185 0.815 40 H 0.182 0.818 41 H 0.155 0.845 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.824 14.866 5.591 18.675 hybrid contribution 0.288 -1.153 -0.393 1.252 sum -9.536 13.713 5.197 17.492 Atomic orbital electron populations 1.22011 0.90830 1.03261 1.04548 1.21064 0.96248 0.92761 0.87424 1.22144 1.00095 0.95707 1.03746 1.45847 1.16243 1.55686 1.18007 1.20514 0.82117 0.78327 0.88649 1.90772 1.57825 1.61027 1.36923 1.20141 0.86196 1.03322 0.98628 1.25613 0.97965 0.87773 0.97734 1.74541 0.94257 1.22397 1.22258 1.85630 1.13081 1.38270 1.61572 1.26604 0.96963 0.81628 0.91436 1.16840 0.82165 0.97904 1.18637 1.21078 0.97119 0.92256 0.93031 1.21186 0.91201 1.01763 1.06890 1.21544 1.01612 0.90536 0.91025 1.21313 0.93017 1.01521 1.10463 1.19921 0.93625 0.85599 0.91767 1.83988 1.37612 1.21939 1.66776 1.21987 0.89858 0.99159 1.38565 0.86736 1.26710 0.99306 0.99267 0.96467 1.70251 1.16358 1.25404 1.41845 0.84628 0.76431 0.76055 0.78988 1.17504 1.20188 1.17924 1.71957 0.97249 1.28697 1.25657 0.89742 0.89880 0.91880 0.92831 0.95419 0.90259 0.90310 0.73978 0.83225 0.81878 0.83688 0.81487 0.81766 0.84529 0.91821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.38 71.98 0.68 -0.78 16 2 C 0.13 2.34 3.18 44.99 0.14 2.48 16 3 C -0.16 -2.74 9.48 71.98 0.68 -2.05 16 4 N -0.70 -12.75 5.08 -442.53 -2.25 -15.00 16 5 C 0.52 15.05 7.79 87.66 0.68 15.73 16 6 O -0.59 -24.74 15.70 -3.05 -0.05 -24.79 16 7 C -0.04 -1.09 6.33 29.10 0.18 -0.91 16 8 C 0.18 7.61 6.69 138.53 0.93 8.53 16 9 N -0.42 -21.23 12.15 -58.50 -0.71 -21.94 16 10 O 0.07 3.77 10.01 86.91 0.87 4.64 16 11 C 0.25 12.25 7.96 87.22 0.69 12.94 16 12 C -0.15 -6.89 5.89 -19.99 -0.12 -7.00 16 13 C -0.02 -0.53 9.70 22.52 0.22 -0.32 16 14 C -0.19 -5.34 10.03 22.26 0.22 -5.12 16 15 C -0.03 -0.84 10.03 22.30 0.22 -0.62 16 16 C -0.24 -9.73 9.16 22.36 0.20 -9.53 16 17 C 0.15 7.24 6.66 22.89 0.15 7.40 16 18 O -0.20 -11.96 8.21 -2.88 -0.02 -11.98 16 19 C -0.42 -23.83 9.49 67.93 0.64 -23.19 16 20 H 0.12 5.71 5.21 -2.91 -0.02 5.70 16 21 C -0.02 -0.98 5.49 84.85 0.47 -0.52 16 22 N -0.90 -56.38 13.67 21.62 0.30 -56.09 16 23 Si 1.02 42.25 29.55 68.60 2.03 44.28 16 24 H -0.25 -9.56 7.11 99.48 0.71 -8.85 16 25 H -0.28 -11.29 7.11 99.48 0.71 -10.58 16 26 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 27 N -0.50 -21.86 11.26 -302.67 -3.41 -25.26 16 28 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.63 16 31 H 0.05 1.36 7.58 -2.39 -0.02 1.34 16 32 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.42 3.84 8.60 -92.71 -0.80 3.04 16 36 H 0.15 2.91 8.14 -2.38 -0.02 2.89 16 37 H 0.16 2.81 8.14 -2.39 -0.02 2.79 16 38 H 0.15 4.51 7.88 -2.91 -0.02 4.49 16 39 H 0.17 3.12 8.06 -2.91 -0.02 3.10 16 40 H 0.16 3.30 8.06 -2.91 -0.02 3.28 16 41 H 0.14 5.33 5.64 -2.91 -0.02 5.31 16 42 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -89.31 368.67 3.04 -86.28 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: 0.28 Total: 22.83 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: 6.00 Total: -2.96 kcal Atomic # 7 Polarization: -112.22 SS G_CDS: -6.07 Total: -118.29 kcal Atomic # 8 Polarization: -32.93 SS G_CDS: 0.80 Total: -32.13 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -89.31 3.04 -86.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809463131.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.520 kcal (2) G-P(sol) polarization free energy of solvation -89.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds