Wall clock time and date at job start Tue Mar 31 2020 16:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50701 * 110.65202 * 2 1 4 4 C 1.38230 * 120.00019 * 266.80588 * 3 2 1 5 5 C 1.38239 * 120.00107 * 179.78995 * 4 3 2 6 6 C 1.38235 * 119.99768 * 0.46667 * 5 4 3 7 7 C 1.38240 * 119.99967 * 359.76746 * 6 5 4 8 8 C 1.38229 * 120.00039 * 0.02581 * 7 6 5 9 9 N 1.47313 * 110.59438 * 122.91021 * 2 1 3 10 10 C 1.34527 * 106.61834 * 118.31084 * 9 2 1 11 11 O 1.21540 * 123.77587 * 180.20912 * 10 9 2 12 12 N 1.33791 * 112.45460 * 0.37945 * 10 9 2 13 13 N 1.40105 * 124.17613 * 179.86859 * 12 10 9 14 14 C 1.34777 * 119.99775 * 284.42033 * 13 12 10 15 15 O 1.21283 * 120.00222 * 0.28016 * 14 13 12 16 16 C 1.50703 * 120.00290 * 180.27576 * 14 13 12 17 17 C 1.52990 * 109.47398 * 180.02562 * 16 14 13 18 18 C 1.50703 * 109.47398 * 180.02562 * 17 16 14 19 19 H 1.08001 * 119.99463 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00445 * 180.02562 * 18 17 16 21 21 N 1.31524 * 120.00004 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00395 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46989 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46903 * 119.99599 * 22 20 18 25 25 H 1.48498 * 109.47416 * 240.00014 * 22 20 18 26 26 C 1.34770 * 111.64596 * 359.59924 * 12 10 9 27 27 O 1.21237 * 127.15513 * 180.26366 * 26 12 10 28 28 H 1.09000 * 109.46807 * 182.21218 * 1 2 3 29 29 H 1.08999 * 109.47349 * 302.21645 * 1 2 3 30 30 H 1.09004 * 109.46761 * 62.21609 * 1 2 3 31 31 H 1.08000 * 120.00039 * 0.02562 * 4 3 2 32 32 H 1.08001 * 120.00242 * 180.25547 * 5 4 3 33 33 H 1.07997 * 119.99988 * 179.78776 * 6 5 4 34 34 H 1.08002 * 119.99436 * 179.97438 * 7 6 5 35 35 H 1.08001 * 120.00050 * 179.97438 * 8 7 6 36 36 H 0.96995 * 126.69256 * 298.56087 * 9 2 1 37 37 H 0.97001 * 120.00437 * 104.70328 * 13 12 10 38 38 H 1.08998 * 109.46954 * 300.00581 * 16 14 13 39 39 H 1.09002 * 109.46946 * 59.99717 * 16 14 13 40 40 H 1.08998 * 109.47508 * 300.00200 * 17 16 14 41 41 H 1.09011 * 109.47182 * 60.00188 * 17 16 14 42 42 H 0.96991 * 119.99897 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0615 1.4102 0.0000 4 6 2.3677 2.0334 -1.1952 5 6 2.8512 3.3285 -1.1955 6 6 3.0375 3.9969 0.0001 7 6 2.7359 3.3719 1.1956 8 6 2.2485 2.0784 1.1956 9 7 2.0482 -0.7492 1.1577 10 6 2.7558 -1.7808 0.6629 11 8 3.3204 -2.6061 1.3538 12 7 2.7716 -1.7948 -0.6748 13 7 3.4371 -2.7583 -1.4441 14 6 4.7786 -2.7136 -1.5668 15 8 5.4100 -1.8423 -1.0072 16 6 5.4940 -3.7462 -2.3992 17 6 6.9985 -3.4701 -2.3720 18 6 7.7139 -4.5024 -3.2050 19 1 7.1515 -5.2781 -3.7035 20 6 9.0862 -4.4573 -3.3297 21 7 9.7710 -3.5130 -2.7222 22 14 9.9729 -5.7372 -4.3616 23 1 8.9823 -6.6829 -4.9359 24 1 10.7084 -5.0632 -5.4617 25 1 10.9328 -6.4827 -3.5083 26 6 2.0634 -0.7709 -1.1911 27 8 1.8887 -0.5194 -2.3641 28 1 -0.3633 -1.0269 0.0397 29 1 -0.3634 0.5479 0.8694 30 1 -0.3633 0.4791 -0.9092 31 1 2.2256 1.5099 -2.1291 32 1 3.0865 3.8169 -2.1296 33 1 3.4185 5.0074 0.0001 34 1 2.8819 3.8940 2.1297 35 1 2.0132 1.5900 2.1297 36 1 1.9040 -0.5416 2.0941 37 1 2.9322 -3.4551 -1.8917 38 1 5.2996 -4.7387 -1.9928 39 1 5.1338 -3.6976 -3.4269 40 1 7.1933 -2.4776 -2.7782 41 1 7.3584 -3.5191 -1.3442 42 1 10.7365 -3.4814 -2.8097 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812455825.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:45 Heat of formation + Delta-G solvation = -43.486249 kcal Electronic energy + Delta-G solvation = -28251.826399 eV Core-core repulsion = 24198.109916 eV Total energy + Delta-G solvation = -4053.716482 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.97626 -40.95462 -40.25874 -39.76567 -37.69876 -37.03515 -35.63180 -33.89323 -33.00721 -32.25035 -31.76056 -30.44763 -27.97055 -26.21845 -24.89400 -24.21435 -23.73155 -22.65352 -21.73416 -21.69955 -19.83011 -19.08720 -18.59248 -18.44136 -17.94226 -17.30838 -17.10879 -16.86054 -16.57924 -16.47583 -16.30409 -15.72220 -15.43823 -15.38789 -15.14582 -14.51382 -14.38354 -14.29894 -14.23058 -13.63623 -13.55268 -13.33631 -13.20675 -12.86738 -12.58643 -12.47181 -12.38803 -12.08478 -12.00761 -11.95540 -11.72862 -11.69823 -11.32580 -10.99007 -10.85278 -10.73647 -10.58177 -9.92668 -9.86218 -8.19375 -6.33619 -0.03747 0.12344 0.30785 0.40185 1.30997 1.43010 1.44437 1.57824 1.66624 1.79409 2.28799 2.43054 2.64212 2.76371 3.13599 3.14354 3.63910 3.73975 3.89534 4.06087 4.07592 4.22958 4.37342 4.45479 4.49916 4.54347 4.59801 4.67912 4.86416 4.90421 4.96625 5.04843 5.07057 5.36887 5.44808 5.47283 5.53679 5.54184 5.55541 5.66127 5.81383 5.96412 5.99470 6.04579 6.13437 6.69113 6.85035 7.12938 7.36802 8.93773 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.016432 B = 0.002882 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.630695 B = 9713.946186 C =10405.547656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.189 3.811 3 C -0.112 4.112 4 C -0.132 4.132 5 C -0.128 4.128 6 C -0.114 4.114 7 C -0.121 4.121 8 C -0.097 4.097 9 N -0.686 5.686 10 C 0.702 3.298 11 O -0.564 6.564 12 N -0.385 5.385 13 N -0.503 5.503 14 C 0.519 3.481 15 O -0.564 6.564 16 C -0.103 4.103 17 C 0.042 3.958 18 C -0.540 4.540 19 H 0.082 0.918 20 C -0.008 4.008 21 N -0.938 5.938 22 Si 0.976 3.024 23 H -0.250 1.250 24 H -0.281 1.281 25 H -0.282 1.282 26 C 0.528 3.472 27 O -0.466 6.466 28 H 0.084 0.916 29 H 0.115 0.885 30 H 0.091 0.909 31 H 0.121 0.879 32 H 0.135 0.865 33 H 0.148 0.852 34 H 0.155 0.845 35 H 0.151 0.849 36 H 0.457 0.543 37 H 0.444 0.556 38 H 0.120 0.880 39 H 0.122 0.878 40 H -0.015 1.015 41 H -0.017 1.017 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.121 12.302 7.422 29.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.098 3.902 3 C -0.113 4.113 4 C -0.150 4.150 5 C -0.146 4.146 6 C -0.132 4.132 7 C -0.138 4.138 8 C -0.116 4.116 9 N -0.354 5.354 10 C 0.402 3.598 11 O -0.438 6.438 12 N -0.219 5.219 13 N -0.257 5.257 14 C 0.308 3.692 15 O -0.438 6.438 16 C -0.144 4.144 17 C 0.004 3.996 18 C -0.578 4.578 19 H 0.100 0.900 20 C -0.206 4.206 21 N -0.578 5.578 22 Si 0.800 3.200 23 H -0.173 1.173 24 H -0.207 1.207 25 H -0.208 1.208 26 C 0.315 3.685 27 O -0.334 6.334 28 H 0.102 0.898 29 H 0.134 0.866 30 H 0.110 0.890 31 H 0.138 0.862 32 H 0.153 0.847 33 H 0.166 0.834 34 H 0.173 0.827 35 H 0.169 0.831 36 H 0.307 0.693 37 H 0.291 0.709 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.003 0.997 41 H 0.001 0.999 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -25.281 12.601 7.507 29.228 hybrid contribution 0.931 -0.649 -0.346 1.186 sum -24.350 11.952 7.161 28.054 Atomic orbital electron populations 1.22142 0.85327 1.05380 1.06706 1.20249 0.99287 0.89194 0.81503 1.19390 1.03787 0.92829 0.95277 1.21420 0.99036 0.96446 0.98095 1.21403 0.99100 0.94314 0.99814 1.21631 0.98109 1.01177 0.92264 1.21537 0.98146 0.94769 0.99390 1.21124 0.98316 0.95113 0.96998 1.45403 1.53983 1.26195 1.09813 1.15988 0.79728 0.83227 0.80823 1.91024 1.48858 1.42841 1.61065 1.45352 1.46796 1.24134 1.05649 1.45326 1.04801 1.26590 1.49030 1.22397 0.80259 0.86355 0.80159 1.90703 1.66500 1.38632 1.47963 1.21710 0.95731 0.96792 1.00188 1.18732 0.89840 0.95683 0.95356 1.21697 0.92592 1.13081 1.30399 0.89995 1.26162 0.98977 0.98205 0.97214 1.70194 1.07439 1.35268 1.44938 0.85233 0.78428 0.78450 0.77882 1.17337 1.20687 1.20770 1.21775 0.76620 0.78914 0.91163 1.90753 1.57474 1.67776 1.17390 0.89755 0.86602 0.89018 0.86163 0.84666 0.83438 0.82718 0.83135 0.69279 0.70914 0.86185 0.85953 0.99696 0.99904 0.92861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 8.97 71.98 0.65 -0.66 16 2 C 0.19 3.44 1.16 2.24 0.00 3.45 16 3 C -0.11 -2.17 4.90 -19.87 -0.10 -2.26 16 4 C -0.13 -3.01 9.18 22.27 0.20 -2.81 16 5 C -0.13 -2.52 10.05 22.27 0.22 -2.30 16 6 C -0.11 -1.79 10.05 22.27 0.22 -1.56 16 7 C -0.12 -1.67 10.05 22.27 0.22 -1.45 16 8 C -0.10 -1.44 9.35 22.27 0.21 -1.23 16 9 N -0.69 -12.94 5.36 -443.25 -2.38 -15.32 16 10 C 0.70 21.44 8.56 179.44 1.54 22.97 16 11 O -0.56 -22.00 17.91 -3.84 -0.07 -22.07 16 12 N -0.39 -11.91 2.93 -441.12 -1.29 -13.20 16 13 N -0.50 -16.15 6.00 -173.53 -1.04 -17.19 16 14 C 0.52 21.74 7.89 87.66 0.69 22.43 16 15 O -0.56 -29.82 16.20 -3.04 -0.05 -29.87 16 16 C -0.10 -4.17 5.64 29.85 0.17 -4.00 16 17 C 0.04 2.35 4.26 29.85 0.13 2.48 16 18 C -0.54 -30.66 9.11 25.60 0.23 -30.43 16 19 H 0.08 4.18 7.74 -2.91 -0.02 4.16 16 20 C -0.01 -0.48 5.46 84.65 0.46 -0.02 16 21 N -0.94 -60.14 13.29 21.45 0.28 -59.85 16 22 Si 0.98 44.55 29.54 68.60 2.03 46.58 16 23 H -0.25 -10.43 7.11 99.48 0.71 -9.73 16 24 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 25 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 26 C 0.53 14.17 6.65 87.94 0.58 14.75 16 27 O -0.47 -13.97 15.87 -2.90 -0.05 -14.01 16 28 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.12 3.13 5.61 -2.91 -0.02 3.12 16 32 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 33 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 34 H 0.16 1.24 8.06 -2.91 -0.02 1.22 16 35 H 0.15 1.25 7.11 -2.91 -0.02 1.23 16 36 H 0.46 5.31 8.19 -92.71 -0.76 4.55 16 37 H 0.44 10.13 8.83 -213.32 -1.88 8.24 16 38 H 0.12 4.15 8.14 -2.39 -0.02 4.13 16 39 H 0.12 4.15 8.14 -2.39 -0.02 4.13 16 40 H -0.02 -0.98 8.10 -2.39 -0.02 -1.00 16 41 H -0.02 -1.12 8.10 -2.38 -0.02 -1.14 16 42 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -91.13 366.54 1.32 -89.81 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -1.56 Total: 15.75 kcal Atomic # 6 Polarization: 13.94 SS G_CDS: 5.44 Total: 19.38 kcal Atomic # 7 Polarization: -101.14 SS G_CDS: -4.43 Total: -105.56 kcal Atomic # 8 Polarization: -65.79 SS G_CDS: -0.16 Total: -65.95 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -91.13 1.32 -89.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812455825.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.328 kcal (2) G-P(sol) polarization free energy of solvation -91.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds