Wall clock time and date at job start Tue Mar 31 2020 16:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36690 * 126.60299 * 2 1 4 4 C 1.47368 * 125.77884 * 0.02661 * 3 2 1 5 5 O 1.21521 * 120.00129 * 359.97438 * 4 3 2 6 6 O 1.34753 * 119.99822 * 179.97438 * 4 3 2 7 7 C 1.45209 * 116.99873 * 180.02562 * 6 4 3 8 8 C 1.52993 * 109.47156 * 180.02562 * 7 6 4 9 9 O 1.42899 * 109.47493 * 64.99448 * 8 7 6 10 10 C 1.42906 * 113.99890 * 180.02562 * 9 8 7 11 11 C 1.50706 * 109.46916 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99981 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99876 * 179.97438 * 11 10 9 14 14 N 1.31509 * 120.00013 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99940 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46989 * 90.00069 * 15 13 11 17 17 H 1.48497 * 109.47003 * 210.00053 * 15 13 11 18 18 H 1.48499 * 109.46916 * 330.00231 * 15 13 11 19 19 N 1.34457 * 108.44420 * 180.28500 * 3 2 1 20 20 N 1.28759 * 109.56418 * 359.55532 * 19 3 2 21 21 N 1.35046 * 126.60216 * 180.02562 * 2 1 3 22 22 C 1.40228 * 126.60577 * 0.02562 * 21 2 1 23 23 C 1.38821 * 120.06196 * 221.74280 * 22 21 2 24 24 C 1.38123 * 119.93106 * 179.74572 * 23 22 21 25 25 C 1.38278 * 120.06473 * 0.53029 * 24 23 22 26 26 C 1.38278 * 120.13090 * 359.74502 * 25 24 23 27 27 C 1.38117 * 120.06565 * 359.97438 * 26 25 24 28 28 H 1.09000 * 109.47571 * 84.65220 * 1 2 3 29 29 H 1.08999 * 109.47256 * 204.65654 * 1 2 3 30 30 H 1.09001 * 109.47093 * 324.65133 * 1 2 3 31 31 H 1.08999 * 109.46580 * 299.99605 * 7 6 4 32 32 H 1.08998 * 109.47334 * 59.99540 * 7 6 4 33 33 H 1.08996 * 109.47665 * 185.00110 * 8 7 6 34 34 H 1.09010 * 109.47053 * 304.99268 * 8 7 6 35 35 H 1.09004 * 109.46801 * 299.99685 * 10 9 8 36 36 H 1.08998 * 109.47377 * 59.99894 * 10 9 8 37 37 H 0.97006 * 120.00196 * 180.02562 * 14 13 11 38 38 H 1.08000 * 120.03819 * 0.02562 * 23 22 21 39 39 H 1.08000 * 119.96722 * 180.27049 * 24 23 22 40 40 H 1.08003 * 119.93299 * 179.76773 * 25 24 23 41 41 H 1.08000 * 119.96175 * 179.97438 * 26 25 24 42 42 H 1.08003 * 120.03119 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3220 1.0973 0.0000 4 6 1.8760 2.5019 0.0006 5 8 0.6891 2.7625 0.0006 6 8 2.7844 3.4972 0.0010 7 6 2.2730 4.8563 0.0021 8 6 3.4435 5.8416 0.0019 9 8 4.1739 5.7134 -1.2197 10 6 5.2947 6.5940 -1.3219 11 6 5.9871 6.3746 -2.6424 12 1 5.6088 5.6368 -3.3345 13 6 7.1029 7.1165 -2.9673 14 7 7.5632 8.0152 -2.1248 15 14 7.9615 6.8441 -4.6038 16 1 7.3714 7.7429 -5.6280 17 1 9.4091 7.1419 -4.4588 18 1 7.7865 5.4310 -5.0253 19 7 3.5996 0.6783 -0.0063 20 7 3.6313 -0.6089 -0.0009 21 7 2.3122 -1.0841 -0.0005 22 6 1.9071 -2.4266 -0.0016 23 6 2.5642 -3.3519 0.7979 24 6 2.1595 -4.6726 0.7987 25 6 1.1081 -5.0754 -0.0041 26 6 0.4555 -4.1571 -0.8058 27 6 0.8519 -2.8340 -0.8064 28 1 -0.3634 0.0958 -1.0232 29 1 -0.3634 -0.9339 0.4287 30 1 -0.3633 0.8382 0.5946 31 1 1.6640 5.0160 -0.8876 32 1 1.6644 5.0148 0.8923 33 1 3.0624 6.8587 0.0923 34 1 4.1016 5.6242 0.8433 35 1 4.9521 7.6269 -1.2588 36 1 5.9910 6.3918 -0.5081 37 1 8.3480 8.5375 -2.3535 38 1 3.3880 -3.0387 1.4221 39 1 2.6674 -5.3921 1.4238 40 1 0.7959 -6.1093 -0.0046 41 1 -0.3651 -4.4748 -1.4320 42 1 0.3414 -2.1171 -1.4325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815195201.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:19 Heat of formation + Delta-G solvation = -3.735228 kcal Electronic energy + Delta-G solvation = -26625.919340 eV Core-core repulsion = 22573.926592 eV Total energy + Delta-G solvation = -4051.992749 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.78890 -40.14372 -39.66853 -37.03039 -36.01969 -35.20608 -32.97996 -32.70369 -31.60725 -30.52739 -29.87588 -28.34483 -26.85657 -24.46551 -24.45237 -23.24013 -22.36546 -21.98354 -21.29517 -20.63513 -18.89300 -17.32549 -16.91881 -16.87805 -16.58189 -16.25344 -16.19335 -15.42701 -15.12570 -14.92269 -14.66692 -14.44420 -14.25836 -14.19314 -13.81995 -13.59600 -13.45691 -13.20200 -12.87286 -12.69228 -12.27590 -12.24647 -11.93113 -11.89950 -11.52368 -11.37140 -11.09009 -10.88767 -10.80642 -10.74209 -10.52887 -10.34095 -9.99121 -9.69341 -9.61119 -9.19372 -9.06003 -8.80753 -8.14245 -6.05625 -4.06599 0.09642 0.64908 1.02677 1.40932 1.55521 2.66999 2.92651 3.02090 3.35202 3.39821 3.46623 3.80751 4.05965 4.16225 4.21371 4.38552 4.44254 4.47627 4.53290 4.67708 4.78710 4.88310 4.91002 5.03345 5.22554 5.24712 5.29121 5.31004 5.33480 5.49888 5.53743 5.63804 5.71727 5.80657 5.91924 5.97785 5.97882 6.14507 6.37361 6.51381 7.12301 7.47310 7.56918 7.84713 7.86836 8.19435 8.59760 9.06063 9.57749 11.05984 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.015971 B = 0.002194 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.713563 B =12758.596134 C =13868.687131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.135 3.865 3 C -0.083 4.083 4 C 0.557 3.443 5 O -0.511 6.511 6 O -0.319 6.319 7 C 0.075 3.925 8 C 0.061 3.939 9 O -0.390 6.390 10 C 0.194 3.806 11 C -0.512 4.512 12 H 0.067 0.933 13 C 0.055 3.945 14 N -0.899 5.899 15 Si 0.908 3.092 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.271 1.271 19 N -0.162 5.162 20 N -0.054 5.054 21 N -0.320 5.320 22 C 0.128 3.872 23 C -0.095 4.095 24 C -0.103 4.103 25 C -0.108 4.108 26 C -0.102 4.102 27 C -0.113 4.113 28 H 0.098 0.902 29 H 0.080 0.920 30 H 0.112 0.888 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.051 0.949 35 H 0.006 0.994 36 H 0.008 0.992 37 H 0.263 0.737 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.133 0.867 41 H 0.137 0.863 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.086 -26.386 8.170 33.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.000 4.000 3 C -0.218 4.218 4 C 0.400 3.600 5 O -0.400 6.400 6 O -0.233 6.233 7 C 0.001 3.999 8 C -0.016 4.016 9 O -0.310 6.310 10 C 0.120 3.880 11 C -0.551 4.551 12 H 0.085 0.915 13 C -0.146 4.146 14 N -0.539 5.539 15 Si 0.735 3.265 16 H -0.205 1.205 17 H -0.211 1.211 18 H -0.196 1.196 19 N -0.036 5.036 20 N -0.032 5.032 21 N -0.099 5.099 22 C 0.037 3.963 23 C -0.115 4.115 24 C -0.121 4.121 25 C -0.126 4.126 26 C -0.120 4.120 27 C -0.134 4.134 28 H 0.117 0.883 29 H 0.099 0.901 30 H 0.130 0.870 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.024 0.976 36 H 0.026 0.974 37 H 0.073 0.927 38 H 0.156 0.844 39 H 0.155 0.845 40 H 0.151 0.849 41 H 0.155 0.845 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -17.808 -26.578 8.042 32.988 hybrid contribution -0.272 0.477 -0.622 0.830 sum -18.081 -26.101 7.419 32.607 Atomic orbital electron populations 1.20844 0.84185 1.05301 1.05372 1.21918 0.96248 0.85604 0.96262 1.20040 0.89301 0.92611 1.19892 1.19273 0.83818 0.84307 0.72602 1.90815 1.17251 1.84384 1.47524 1.86757 1.38079 1.16080 1.82372 1.23319 0.96982 0.76881 1.02714 1.22319 0.92977 0.95655 0.90689 1.87929 1.44616 1.63751 1.34666 1.20238 0.82294 0.87876 0.97573 1.21055 1.11000 1.21090 1.01910 0.91521 1.24945 0.96782 0.94979 0.97861 1.69961 1.24371 1.23671 1.35864 0.86330 0.78382 0.78770 0.82989 1.20515 1.21077 1.19586 1.74880 1.18411 1.03178 1.07125 1.82267 0.94744 1.03431 1.22795 1.47609 1.07032 1.04832 1.50448 1.17520 0.98484 0.79815 1.00472 1.21116 0.99824 0.92843 0.97693 1.21148 0.96937 0.94970 0.99058 1.21399 0.95418 1.00241 0.95562 1.21084 1.00091 0.91805 0.99035 1.21176 0.96704 0.97491 0.98009 0.88331 0.90104 0.87002 0.90208 0.90146 0.91807 0.93060 0.97627 0.97414 0.92698 0.84423 0.84507 0.84901 0.84476 0.84668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.76 8.19 36.01 0.29 -0.46 16 2 C 0.13 1.59 6.84 -81.74 -0.56 1.03 16 3 C -0.08 -1.27 7.02 -83.56 -0.59 -1.86 16 4 C 0.56 9.13 7.96 34.45 0.27 9.40 16 5 O -0.51 -8.01 14.64 -19.28 -0.28 -8.29 16 6 O -0.32 -5.91 10.20 -43.42 -0.44 -6.36 16 7 C 0.07 1.22 5.85 37.15 0.22 1.44 16 8 C 0.06 1.17 6.33 37.15 0.24 1.40 16 9 O -0.39 -9.87 10.30 -38.80 -0.40 -10.27 16 10 C 0.19 5.50 5.69 36.01 0.20 5.71 16 11 C -0.51 -15.64 9.43 -34.44 -0.32 -15.97 16 12 H 0.07 2.04 7.81 -52.49 -0.41 1.63 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 14 N -0.90 -27.50 13.29 55.43 0.74 -26.77 16 15 Si 0.91 22.57 29.54 -169.99 -5.02 17.55 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 19 N -0.16 -2.80 12.39 32.84 0.41 -2.39 16 20 N -0.05 -0.82 13.64 60.35 0.82 0.00 16 21 N -0.32 -3.79 3.71 -6.71 -0.02 -3.82 16 22 C 0.13 1.13 6.13 -83.58 -0.51 0.62 16 23 C -0.09 -0.71 9.86 -39.41 -0.39 -1.10 16 24 C -0.10 -0.51 10.04 -39.61 -0.40 -0.91 16 25 C -0.11 -0.43 10.04 -39.55 -0.40 -0.83 16 26 C -0.10 -0.45 10.04 -39.61 -0.40 -0.84 16 27 C -0.11 -0.72 8.37 -39.41 -0.33 -1.05 16 28 H 0.10 0.62 8.12 -51.93 -0.42 0.20 16 29 H 0.08 0.43 6.98 -51.93 -0.36 0.07 16 30 H 0.11 0.94 6.73 -51.93 -0.35 0.59 16 31 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.05 0.95 8.14 -51.92 -0.42 0.53 16 35 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 36 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 38 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 39 H 0.14 0.38 8.06 -52.49 -0.42 -0.04 16 40 H 0.13 0.22 8.06 -52.48 -0.42 -0.20 16 41 H 0.14 0.28 8.06 -52.49 -0.42 -0.15 16 42 H 0.14 0.72 7.02 -52.48 -0.37 0.35 16 LS Contribution 372.32 15.07 5.61 5.61 Total: -1.00 -36.62 372.32 -6.63 -43.25 By element: Atomic # 1 Polarization: -1.37 SS G_CDS: -5.27 Total: -6.64 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: -2.76 Total: -1.88 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: 1.94 Total: -32.98 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -1.12 Total: -24.91 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.62 -6.63 -43.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815195201.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.516 kcal (2) G-P(sol) polarization free energy of solvation -36.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds