Wall clock time and date at job start Tue Mar 31 2020 16:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36690 * 126.60299 * 2 1 4 4 C 1.47368 * 125.77884 * 0.02661 * 3 2 1 5 5 O 1.21521 * 120.00129 * 359.97438 * 4 3 2 6 6 O 1.34753 * 119.99822 * 179.97438 * 4 3 2 7 7 C 1.45209 * 116.99873 * 180.02562 * 6 4 3 8 8 C 1.52993 * 109.47156 * 180.02562 * 7 6 4 9 9 O 1.42899 * 109.47493 * 64.99448 * 8 7 6 10 10 C 1.42906 * 113.99890 * 180.02562 * 9 8 7 11 11 C 1.50706 * 109.46916 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99981 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99876 * 179.97438 * 11 10 9 14 14 N 1.31509 * 120.00013 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99940 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46989 * 90.00069 * 15 13 11 17 17 H 1.48497 * 109.47003 * 210.00053 * 15 13 11 18 18 H 1.48499 * 109.46916 * 330.00231 * 15 13 11 19 19 N 1.34457 * 108.44420 * 180.28500 * 3 2 1 20 20 N 1.28759 * 109.56418 * 359.55532 * 19 3 2 21 21 N 1.35046 * 126.60216 * 180.02562 * 2 1 3 22 22 C 1.40228 * 126.60577 * 0.02562 * 21 2 1 23 23 C 1.38821 * 120.06196 * 221.74280 * 22 21 2 24 24 C 1.38123 * 119.93106 * 179.74572 * 23 22 21 25 25 C 1.38278 * 120.06473 * 0.53029 * 24 23 22 26 26 C 1.38278 * 120.13090 * 359.74502 * 25 24 23 27 27 C 1.38117 * 120.06565 * 359.97438 * 26 25 24 28 28 H 1.09000 * 109.47571 * 84.65220 * 1 2 3 29 29 H 1.08999 * 109.47256 * 204.65654 * 1 2 3 30 30 H 1.09001 * 109.47093 * 324.65133 * 1 2 3 31 31 H 1.08999 * 109.46580 * 299.99605 * 7 6 4 32 32 H 1.08998 * 109.47334 * 59.99540 * 7 6 4 33 33 H 1.08996 * 109.47665 * 185.00110 * 8 7 6 34 34 H 1.09010 * 109.47053 * 304.99268 * 8 7 6 35 35 H 1.09004 * 109.46801 * 299.99685 * 10 9 8 36 36 H 1.08998 * 109.47377 * 59.99894 * 10 9 8 37 37 H 0.97006 * 120.00196 * 180.02562 * 14 13 11 38 38 H 1.08000 * 120.03819 * 0.02562 * 23 22 21 39 39 H 1.08000 * 119.96722 * 180.27049 * 24 23 22 40 40 H 1.08003 * 119.93299 * 179.76773 * 25 24 23 41 41 H 1.08000 * 119.96175 * 179.97438 * 26 25 24 42 42 H 1.08003 * 120.03119 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3220 1.0973 0.0000 4 6 1.8760 2.5019 0.0006 5 8 0.6891 2.7625 0.0006 6 8 2.7844 3.4972 0.0010 7 6 2.2730 4.8563 0.0021 8 6 3.4435 5.8416 0.0019 9 8 4.1739 5.7134 -1.2197 10 6 5.2947 6.5940 -1.3219 11 6 5.9871 6.3746 -2.6424 12 1 5.6088 5.6368 -3.3345 13 6 7.1029 7.1165 -2.9673 14 7 7.5632 8.0152 -2.1248 15 14 7.9615 6.8441 -4.6038 16 1 7.3714 7.7429 -5.6280 17 1 9.4091 7.1419 -4.4588 18 1 7.7865 5.4310 -5.0253 19 7 3.5996 0.6783 -0.0063 20 7 3.6313 -0.6089 -0.0009 21 7 2.3122 -1.0841 -0.0005 22 6 1.9071 -2.4266 -0.0016 23 6 2.5642 -3.3519 0.7979 24 6 2.1595 -4.6726 0.7987 25 6 1.1081 -5.0754 -0.0041 26 6 0.4555 -4.1571 -0.8058 27 6 0.8519 -2.8340 -0.8064 28 1 -0.3634 0.0958 -1.0232 29 1 -0.3634 -0.9339 0.4287 30 1 -0.3633 0.8382 0.5946 31 1 1.6640 5.0160 -0.8876 32 1 1.6644 5.0148 0.8923 33 1 3.0624 6.8587 0.0923 34 1 4.1016 5.6242 0.8433 35 1 4.9521 7.6269 -1.2588 36 1 5.9910 6.3918 -0.5081 37 1 8.3480 8.5375 -2.3535 38 1 3.3880 -3.0387 1.4221 39 1 2.6674 -5.3921 1.4238 40 1 0.7959 -6.1093 -0.0046 41 1 -0.3651 -4.4748 -1.4320 42 1 0.3414 -2.1171 -1.4325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815195201.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:18 Heat of formation + Delta-G solvation = -27.657665 kcal Electronic energy + Delta-G solvation = -26626.956695 eV Core-core repulsion = 22573.926592 eV Total energy + Delta-G solvation = -4053.030103 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.77854 -41.34907 -40.24311 -38.75360 -37.51479 -36.03290 -34.95829 -33.82802 -32.07576 -31.80767 -30.81839 -29.34531 -28.88864 -25.58877 -25.19118 -24.55376 -23.86128 -23.29314 -22.12802 -21.69302 -19.81433 -18.71698 -18.26188 -18.08522 -17.81241 -17.53411 -17.18002 -16.91300 -16.38405 -16.27917 -15.84312 -15.64962 -15.31090 -15.16254 -14.67454 -14.56088 -14.26703 -14.18697 -14.09162 -13.82985 -13.67399 -13.32077 -13.15477 -12.93420 -12.72995 -12.71231 -12.53976 -12.47630 -12.41055 -12.04944 -11.84482 -11.77223 -11.70725 -11.29577 -10.90510 -10.58127 -10.27549 -10.10434 -9.80756 -8.33536 -6.45434 -0.61438 0.11685 0.24470 0.41596 0.72032 1.37744 1.41241 1.49967 1.53393 1.73681 2.33514 2.57541 2.89819 2.99871 3.07107 3.23514 3.40379 3.49824 3.77609 3.90917 3.92115 4.11990 4.13783 4.18052 4.30828 4.40471 4.42180 4.44091 4.48205 4.50768 4.60311 4.67327 4.84198 4.91509 4.94400 5.16427 5.19706 5.21779 5.27078 5.42381 5.44903 5.52857 5.85805 5.94117 6.39539 6.50051 6.70951 6.78814 7.25726 8.78700 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.015971 B = 0.002194 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.713563 B =12758.596134 C =13868.687131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.153 3.847 3 C -0.115 4.115 4 C 0.558 3.442 5 O -0.507 6.507 6 O -0.349 6.349 7 C 0.078 3.922 8 C 0.051 3.949 9 O -0.411 6.411 10 C 0.208 3.792 11 C -0.551 4.551 12 H 0.057 0.943 13 C 0.006 3.994 14 N -0.928 5.928 15 Si 0.983 3.017 16 H -0.264 1.264 17 H -0.272 1.272 18 H -0.270 1.270 19 N -0.206 5.206 20 N -0.081 5.081 21 N -0.306 5.306 22 C 0.087 3.913 23 C -0.111 4.111 24 C -0.103 4.103 25 C -0.096 4.096 26 C -0.096 4.096 27 C -0.114 4.114 28 H 0.118 0.882 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.081 0.919 32 H 0.119 0.881 33 H 0.090 0.910 34 H 0.052 0.948 35 H -0.004 1.004 36 H -0.013 1.013 37 H 0.272 0.728 38 H 0.124 0.876 39 H 0.159 0.841 40 H 0.166 0.834 41 H 0.169 0.831 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.257 -28.894 7.266 36.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.016 3.984 3 C -0.252 4.252 4 C 0.402 3.598 5 O -0.396 6.396 6 O -0.264 6.264 7 C 0.005 3.995 8 C -0.025 4.025 9 O -0.331 6.331 10 C 0.133 3.867 11 C -0.588 4.588 12 H 0.075 0.925 13 C -0.192 4.192 14 N -0.567 5.567 15 Si 0.805 3.195 16 H -0.189 1.189 17 H -0.196 1.196 18 H -0.194 1.194 19 N -0.080 5.080 20 N -0.059 5.059 21 N -0.084 5.084 22 C -0.003 4.003 23 C -0.131 4.131 24 C -0.121 4.121 25 C -0.114 4.114 26 C -0.115 4.115 27 C -0.134 4.134 28 H 0.136 0.864 29 H 0.128 0.872 30 H 0.126 0.874 31 H 0.099 0.901 32 H 0.137 0.863 33 H 0.107 0.893 34 H 0.070 0.930 35 H 0.014 0.986 36 H 0.004 0.996 37 H 0.080 0.920 38 H 0.142 0.858 39 H 0.176 0.824 40 H 0.183 0.817 41 H 0.186 0.814 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -19.992 -29.107 7.160 36.030 hybrid contribution 0.269 1.058 -0.254 1.120 sum -19.724 -28.050 6.906 34.979 Atomic orbital electron populations 1.21051 0.80965 1.06629 1.06679 1.22471 0.97708 0.84405 0.93802 1.20212 0.89628 0.93002 1.22324 1.19374 0.83684 0.84329 0.72446 1.90789 1.16712 1.84433 1.47635 1.86734 1.39627 1.17124 1.82954 1.23370 0.95748 0.75765 1.04606 1.22689 0.93404 0.98195 0.88245 1.87873 1.44056 1.63236 1.37935 1.19871 0.82856 0.87767 0.96188 1.21372 1.12552 1.21946 1.02947 0.92504 1.25951 0.97045 0.94148 1.02083 1.70056 1.24806 1.24006 1.37817 0.85193 0.77520 0.78874 0.77875 1.18880 1.19636 1.19415 1.74831 1.20045 1.04280 1.08817 1.82133 0.96989 1.02822 1.24002 1.47777 1.05907 1.06167 1.48597 1.17975 1.00636 0.78518 1.03123 1.21198 0.99840 0.94019 0.98011 1.21449 0.97287 0.94020 0.99368 1.21852 0.93991 1.01764 0.93809 1.21499 1.00443 0.90705 0.98828 1.21398 0.95760 0.98825 0.97437 0.86351 0.87241 0.87437 0.90063 0.86341 0.89262 0.93022 0.98585 0.99567 0.91954 0.85843 0.82375 0.81673 0.81368 0.83653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.28 8.19 71.24 0.58 -0.70 16 2 C 0.15 3.61 6.84 41.70 0.29 3.89 16 3 C -0.11 -3.69 7.02 40.78 0.29 -3.40 16 4 C 0.56 18.77 7.96 70.23 0.56 19.33 16 5 O -0.51 -15.69 14.64 19.77 0.29 -15.40 16 6 O -0.35 -13.41 10.20 -53.98 -0.55 -13.96 16 7 C 0.08 2.55 5.85 71.98 0.42 2.98 16 8 C 0.05 1.99 6.33 71.98 0.46 2.44 16 9 O -0.41 -21.56 10.30 -145.57 -1.50 -23.06 16 10 C 0.21 12.26 5.69 71.24 0.41 12.67 16 11 C -0.55 -34.60 9.43 25.60 0.24 -34.36 16 12 H 0.06 3.59 7.81 -2.91 -0.02 3.56 16 13 C 0.01 0.38 5.46 84.65 0.46 0.84 16 14 N -0.93 -57.34 13.29 21.45 0.28 -57.05 16 15 Si 0.98 46.43 29.54 68.60 2.03 48.46 16 16 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 17 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 18 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 19 N -0.21 -7.67 12.39 -50.03 -0.62 -8.29 16 20 N -0.08 -2.64 13.64 37.02 0.50 -2.14 16 21 N -0.31 -7.41 3.71 -175.14 -0.65 -8.07 16 22 C 0.09 1.48 6.13 38.08 0.23 1.71 16 23 C -0.11 -1.63 9.86 22.38 0.22 -1.40 16 24 C -0.10 -0.79 10.04 22.25 0.22 -0.57 16 25 C -0.10 -0.40 10.04 22.29 0.22 -0.17 16 26 C -0.10 -0.47 10.04 22.25 0.22 -0.25 16 27 C -0.11 -1.18 8.37 22.38 0.19 -1.00 16 28 H 0.12 1.19 8.12 -2.39 -0.02 1.17 16 29 H 0.11 0.85 6.98 -2.39 -0.02 0.84 16 30 H 0.11 1.63 6.73 -2.39 -0.02 1.61 16 31 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 32 H 0.12 2.95 8.14 -2.39 -0.02 2.93 16 33 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 34 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 35 H 0.00 -0.21 8.14 -2.38 -0.02 -0.23 16 36 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 37 H 0.27 15.49 8.31 -92.70 -0.77 14.72 16 38 H 0.12 2.06 8.06 -2.91 -0.02 2.03 16 39 H 0.16 0.47 8.06 -2.91 -0.02 0.44 16 40 H 0.17 -0.34 8.06 -2.91 -0.02 -0.36 16 41 H 0.17 -0.20 8.06 -2.91 -0.02 -0.22 16 42 H 0.15 1.14 7.02 -2.91 -0.02 1.12 16 Total: -1.00 -83.44 372.32 5.84 -77.60 By element: Atomic # 1 Polarization: -1.15 SS G_CDS: 1.04 Total: -0.11 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: 5.01 Total: 2.01 kcal Atomic # 7 Polarization: -75.06 SS G_CDS: -0.48 Total: -75.54 kcal Atomic # 8 Polarization: -50.66 SS G_CDS: -1.76 Total: -52.42 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -83.44 5.84 -77.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815195201.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.939 kcal (2) G-P(sol) polarization free energy of solvation -83.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds