Wall clock time and date at job start Tue Mar 31 2020 16:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30632 * 125.84210 * 2 1 4 4 C 1.34026 * 109.78881 * 179.97438 * 3 2 1 5 5 C 1.48281 * 125.65947 * 179.97438 * 4 3 2 6 6 C 1.39507 * 119.96827 * 359.73017 * 5 4 3 7 7 C 1.37652 * 120.02837 * 179.72390 * 6 5 4 8 8 C 1.39759 * 119.96670 * 0.54432 * 7 6 5 9 9 C 1.47589 * 120.02764 * 179.74725 * 8 7 6 10 10 O 1.21496 * 119.99825 * 179.97438 * 9 8 7 11 11 O 1.34730 * 119.99976 * 359.97438 * 9 8 7 12 12 C 1.45208 * 116.99952 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.46989 * 179.97438 * 12 11 9 14 14 O 1.42895 * 109.47270 * 65.00191 * 13 12 11 15 15 C 1.42897 * 114.00355 * 179.97438 * 14 13 12 16 16 C 1.50695 * 109.47648 * 179.97438 * 15 14 13 17 17 H 1.08012 * 119.99860 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00716 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99485 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00543 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46899 * 89.99875 * 20 18 16 22 22 H 1.48491 * 109.47517 * 209.99882 * 20 18 16 23 23 H 1.48497 * 109.47008 * 330.00181 * 20 18 16 24 24 C 1.39765 * 119.94461 * 359.72526 * 8 7 6 25 25 C 1.37653 * 119.96447 * 0.02562 * 24 8 7 26 26 N 1.31554 * 108.68253 * 359.97438 * 4 3 2 27 27 N 1.34573 * 125.84990 * 179.69247 * 2 1 3 28 28 H 0.96998 * 126.74033 * 0.02562 * 27 2 1 29 29 H 1.08999 * 109.46995 * 90.02426 * 1 2 3 30 30 H 1.08994 * 109.46790 * 210.02112 * 1 2 3 31 31 H 1.08997 * 109.47305 * 330.02553 * 1 2 3 32 32 H 1.08004 * 119.98587 * 359.97438 * 6 5 4 33 33 H 1.08002 * 120.01114 * 180.24949 * 7 6 5 34 34 H 1.09003 * 109.47105 * 299.99969 * 12 11 9 35 35 H 1.09002 * 109.47039 * 59.99769 * 12 11 9 36 36 H 1.09007 * 109.46974 * 184.99948 * 13 12 11 37 37 H 1.09000 * 109.47581 * 304.99496 * 13 12 11 38 38 H 1.09003 * 109.47083 * 299.99771 * 15 14 13 39 39 H 1.08998 * 109.47227 * 59.99624 * 15 14 13 40 40 H 0.96997 * 119.99944 * 179.97438 * 19 18 16 41 41 H 1.07995 * 120.02331 * 179.97438 * 24 8 7 42 42 H 1.07998 * 119.98366 * 180.02562 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2720 1.0590 0.0000 4 6 3.5600 0.6883 0.0006 5 6 4.7239 1.6071 0.0002 6 6 4.5220 2.9875 -0.0065 7 6 5.6016 3.8415 -0.0011 8 6 6.9002 3.3251 -0.0004 9 6 8.0587 4.2396 -0.0002 10 8 9.1874 3.7901 0.0008 11 8 7.8645 5.5728 -0.0013 12 6 9.0497 6.4117 -0.0016 13 6 8.6327 7.8837 -0.0035 14 8 7.9545 8.1882 1.2168 15 6 7.5208 9.5460 1.3177 16 6 6.8216 9.7535 2.6364 17 1 6.7183 8.9306 3.3283 18 6 6.3127 10.9936 2.9594 19 7 6.4380 11.9955 2.1167 20 14 5.4454 11.2506 4.5937 21 1 6.4358 11.6649 5.6198 22 1 4.4140 12.3085 4.4458 23 1 4.7973 9.9826 5.0149 24 6 7.1010 1.9420 0.0006 25 6 6.0197 1.0902 0.0004 26 7 3.6203 -0.6258 0.0015 27 7 2.2952 -1.0908 0.0059 28 1 2.0050 -2.0163 0.0105 29 1 -0.3633 -0.0004 -1.0277 30 1 -0.3633 -0.8898 0.5141 31 1 -0.3634 0.8902 0.5134 32 1 3.5183 3.3862 -0.0118 33 1 5.4450 4.9101 -0.0022 34 1 9.6429 6.2028 0.8887 35 1 9.6434 6.2014 -0.8913 36 1 9.5188 8.5122 -0.0933 37 1 7.9670 8.0718 -0.8459 38 1 8.3839 10.2087 1.2555 39 1 6.8321 9.7689 0.5027 40 1 6.0797 12.8678 2.3437 41 1 8.1040 1.5416 0.0007 42 1 6.1745 0.0214 0.0016 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815215196.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:21 Heat of formation + Delta-G solvation = -26.306378 kcal Electronic energy + Delta-G solvation = -26039.376303 eV Core-core repulsion = 21986.404796 eV Total energy + Delta-G solvation = -4052.971507 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.53297 -40.46680 -38.87932 -36.99906 -35.96775 -33.96036 -32.90504 -32.75552 -31.47441 -31.14306 -29.95626 -28.44056 -26.93597 -25.32153 -23.21220 -22.46431 -22.18368 -21.70784 -21.24868 -20.48322 -18.45597 -17.93181 -17.06614 -16.45759 -16.40932 -16.20325 -16.05231 -15.32131 -15.17390 -14.64145 -14.60724 -14.37602 -14.20838 -13.73528 -13.68375 -13.56628 -13.41656 -13.17583 -12.74623 -12.58185 -12.33406 -12.21795 -11.93844 -11.43434 -11.31630 -10.92293 -10.85288 -10.82928 -10.75532 -10.49174 -10.43021 -10.34785 -10.16902 -10.02921 -9.21639 -9.11087 -8.87822 -8.85851 -8.19565 -6.10253 -4.11723 0.17102 1.18922 1.22763 2.11842 2.22101 2.74292 2.84570 3.31957 3.36892 3.38290 3.42760 3.70022 4.01696 4.27318 4.34323 4.61432 4.70091 4.76792 4.77881 4.84022 4.90465 5.11381 5.23192 5.24824 5.26414 5.30497 5.48337 5.49219 5.64809 5.77827 5.85028 5.88658 5.93821 6.06322 6.14321 6.15260 6.24285 6.56112 6.57010 6.58433 7.07171 7.41566 7.59788 7.79856 7.84150 8.14362 8.54214 9.00981 9.53014 11.01290 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.010419 B = 0.002301 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2686.737663 B =12167.170957 C =14406.713532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.288 3.712 3 N -0.527 5.527 4 C 0.270 3.730 5 C 0.011 3.989 6 C -0.087 4.087 7 C -0.060 4.060 8 C -0.106 4.106 9 C 0.507 3.493 10 O -0.512 6.512 11 O -0.335 6.335 12 C 0.075 3.925 13 C 0.061 3.939 14 O -0.390 6.390 15 C 0.194 3.806 16 C -0.514 4.514 17 H 0.067 0.933 18 C 0.056 3.944 19 N -0.899 5.899 20 Si 0.908 3.092 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.271 1.271 24 C -0.060 4.060 25 C -0.099 4.099 26 N -0.302 5.302 27 N -0.482 5.482 28 H 0.442 0.558 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.101 0.899 32 H 0.146 0.854 33 H 0.152 0.848 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.051 0.949 38 H 0.006 0.994 39 H 0.008 0.992 40 H 0.264 0.736 41 H 0.143 0.857 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.209 -26.822 -8.069 29.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.009 3.991 3 N -0.255 5.255 4 C -0.009 4.009 5 C 0.009 3.991 6 C -0.107 4.107 7 C -0.078 4.078 8 C -0.108 4.108 9 C 0.352 3.648 10 O -0.403 6.403 11 O -0.250 6.250 12 C 0.002 3.998 13 C -0.016 4.016 14 O -0.310 6.310 15 C 0.120 3.880 16 C -0.552 4.552 17 H 0.085 0.915 18 C -0.145 4.145 19 N -0.538 5.538 20 Si 0.735 3.265 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.196 1.196 24 C -0.078 4.078 25 C -0.119 4.119 26 N -0.131 5.131 27 N -0.201 5.201 28 H 0.288 0.712 29 H 0.113 0.887 30 H 0.103 0.897 31 H 0.120 0.880 32 H 0.163 0.837 33 H 0.170 0.830 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.024 0.976 39 H 0.025 0.975 40 H 0.073 0.927 41 H 0.161 0.839 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -8.410 -26.893 -7.940 29.275 hybrid contribution -0.608 -0.183 0.588 0.865 sum -9.019 -27.076 -7.352 29.470 Atomic orbital electron populations 1.20446 0.83254 1.05321 1.04817 1.24449 0.96785 0.82535 0.95316 1.70494 1.00859 1.29311 1.24850 1.22277 0.91508 0.88967 0.98188 1.17699 0.88810 0.91363 1.01272 1.21235 1.00321 0.91186 0.97960 1.21597 0.90516 1.01633 0.94054 1.19344 0.92002 0.92629 1.06843 1.21110 0.88663 0.82243 0.72820 1.90813 1.25062 1.78085 1.46325 1.86643 1.38609 1.16725 1.83040 1.23254 0.85130 0.88756 1.02687 1.22327 0.97313 0.91441 0.90548 1.87921 1.75541 1.32713 1.34862 1.20237 0.93755 0.76451 0.97552 1.21048 1.36038 0.96067 1.02052 0.91501 1.24948 0.96245 0.95500 0.97835 1.69961 1.46293 1.01653 1.35907 0.86329 0.79176 0.78003 0.82964 1.20494 1.21079 1.19560 1.21150 0.99943 0.91039 0.95692 1.21062 0.90456 1.00548 0.99818 1.78239 0.96521 1.11694 1.26627 1.48003 1.04097 1.10193 1.57822 0.71238 0.88742 0.89716 0.87986 0.83655 0.83030 0.90339 0.90294 0.91880 0.93118 0.97626 0.97454 0.92654 0.83895 0.84347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.21 10.51 36.01 0.38 0.17 16 2 C 0.29 2.15 8.22 -155.73 -1.28 0.87 16 3 N -0.53 -5.85 10.81 -8.57 -0.09 -5.95 16 4 C 0.27 3.20 7.77 -156.59 -1.22 1.99 16 5 C 0.01 0.13 5.88 -104.82 -0.62 -0.48 16 6 C -0.09 -1.02 9.67 -39.32 -0.38 -1.40 16 7 C -0.06 -0.75 9.60 -39.23 -0.38 -1.13 16 8 C -0.11 -1.43 5.88 -104.94 -0.62 -2.04 16 9 C 0.51 8.00 7.89 34.55 0.27 8.27 16 10 O -0.51 -8.81 16.12 -19.26 -0.31 -9.12 16 11 O -0.33 -5.68 9.43 -43.36 -0.41 -6.09 16 12 C 0.08 1.21 5.85 37.16 0.22 1.42 16 13 C 0.06 1.12 6.33 37.16 0.24 1.35 16 14 O -0.39 -9.46 10.30 -38.80 -0.40 -9.86 16 15 C 0.19 5.31 5.69 36.00 0.20 5.51 16 16 C -0.51 -15.18 9.43 -34.44 -0.32 -15.51 16 17 H 0.07 1.97 7.81 -52.48 -0.41 1.56 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 20 Si 0.91 21.92 29.54 -169.99 -5.02 16.90 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 24 C -0.06 -0.70 9.58 -39.22 -0.38 -1.07 16 25 C -0.10 -1.07 9.66 -39.32 -0.38 -1.45 16 26 N -0.30 -3.26 12.41 32.09 0.40 -2.86 16 27 N -0.48 -3.39 7.44 32.61 0.24 -3.15 16 28 H 0.44 1.32 8.96 -182.35 -1.63 -0.31 16 29 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.08 0.02 8.14 -51.93 -0.42 -0.41 16 31 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.15 1.59 7.82 -52.48 -0.41 1.17 16 33 H 0.15 1.92 7.60 -52.49 -0.40 1.52 16 34 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 39 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 40 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.14 1.52 7.64 -52.49 -0.40 1.12 16 42 H 0.14 1.29 7.82 -52.49 -0.41 0.88 16 LS Contribution 377.30 15.07 5.69 5.69 Total: -1.00 -36.70 377.30 -10.13 -46.82 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: -6.60 Total: -4.30 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -4.36 Total: -1.98 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: 1.28 Total: -38.07 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -1.12 Total: -25.06 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.70 -10.13 -46.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815215196.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.518 kcal (2) G-P(sol) polarization free energy of solvation -36.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds