Wall clock time and date at job start Tue Mar 31 2020 16:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30632 * 125.84210 * 2 1 4 4 C 1.34026 * 109.78881 * 179.97438 * 3 2 1 5 5 C 1.48281 * 125.65947 * 179.97438 * 4 3 2 6 6 C 1.39507 * 119.96827 * 359.73017 * 5 4 3 7 7 C 1.37652 * 120.02837 * 179.72390 * 6 5 4 8 8 C 1.39759 * 119.96670 * 0.54432 * 7 6 5 9 9 C 1.47589 * 120.02764 * 179.74725 * 8 7 6 10 10 O 1.21496 * 119.99825 * 179.97438 * 9 8 7 11 11 O 1.34730 * 119.99976 * 359.97438 * 9 8 7 12 12 C 1.45208 * 116.99952 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.46989 * 179.97438 * 12 11 9 14 14 O 1.42895 * 109.47270 * 65.00191 * 13 12 11 15 15 C 1.42897 * 114.00355 * 179.97438 * 14 13 12 16 16 C 1.50695 * 109.47648 * 179.97438 * 15 14 13 17 17 H 1.08012 * 119.99860 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00716 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99485 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00543 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46899 * 89.99875 * 20 18 16 22 22 H 1.48491 * 109.47517 * 209.99882 * 20 18 16 23 23 H 1.48497 * 109.47008 * 330.00181 * 20 18 16 24 24 C 1.39765 * 119.94461 * 359.72526 * 8 7 6 25 25 C 1.37653 * 119.96447 * 0.02562 * 24 8 7 26 26 N 1.31554 * 108.68253 * 359.97438 * 4 3 2 27 27 N 1.34573 * 125.84990 * 179.69247 * 2 1 3 28 28 H 0.96998 * 126.74033 * 0.02562 * 27 2 1 29 29 H 1.08999 * 109.46995 * 90.02426 * 1 2 3 30 30 H 1.08994 * 109.46790 * 210.02112 * 1 2 3 31 31 H 1.08997 * 109.47305 * 330.02553 * 1 2 3 32 32 H 1.08004 * 119.98587 * 359.97438 * 6 5 4 33 33 H 1.08002 * 120.01114 * 180.24949 * 7 6 5 34 34 H 1.09003 * 109.47105 * 299.99969 * 12 11 9 35 35 H 1.09002 * 109.47039 * 59.99769 * 12 11 9 36 36 H 1.09007 * 109.46974 * 184.99948 * 13 12 11 37 37 H 1.09000 * 109.47581 * 304.99496 * 13 12 11 38 38 H 1.09003 * 109.47083 * 299.99771 * 15 14 13 39 39 H 1.08998 * 109.47227 * 59.99624 * 15 14 13 40 40 H 0.96997 * 119.99944 * 179.97438 * 19 18 16 41 41 H 1.07995 * 120.02331 * 179.97438 * 24 8 7 42 42 H 1.07998 * 119.98366 * 180.02562 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2720 1.0590 0.0000 4 6 3.5600 0.6883 0.0006 5 6 4.7239 1.6071 0.0002 6 6 4.5220 2.9875 -0.0065 7 6 5.6016 3.8415 -0.0011 8 6 6.9002 3.3251 -0.0004 9 6 8.0587 4.2396 -0.0002 10 8 9.1874 3.7901 0.0008 11 8 7.8645 5.5728 -0.0013 12 6 9.0497 6.4117 -0.0016 13 6 8.6327 7.8837 -0.0035 14 8 7.9545 8.1882 1.2168 15 6 7.5208 9.5460 1.3177 16 6 6.8216 9.7535 2.6364 17 1 6.7183 8.9306 3.3283 18 6 6.3127 10.9936 2.9594 19 7 6.4380 11.9955 2.1167 20 14 5.4454 11.2506 4.5937 21 1 6.4358 11.6649 5.6198 22 1 4.4140 12.3085 4.4458 23 1 4.7973 9.9826 5.0149 24 6 7.1010 1.9420 0.0006 25 6 6.0197 1.0902 0.0004 26 7 3.6203 -0.6258 0.0015 27 7 2.2952 -1.0908 0.0059 28 1 2.0050 -2.0163 0.0105 29 1 -0.3633 -0.0004 -1.0277 30 1 -0.3633 -0.8898 0.5141 31 1 -0.3634 0.8902 0.5134 32 1 3.5183 3.3862 -0.0118 33 1 5.4450 4.9101 -0.0022 34 1 9.6429 6.2028 0.8887 35 1 9.6434 6.2014 -0.8913 36 1 9.5188 8.5122 -0.0933 37 1 7.9670 8.0718 -0.8459 38 1 8.3839 10.2087 1.2555 39 1 6.8321 9.7689 0.5027 40 1 6.0797 12.8678 2.3437 41 1 8.1040 1.5416 0.0007 42 1 6.1745 0.0214 0.0016 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815215196.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:20 Heat of formation + Delta-G solvation = -48.985711 kcal Electronic energy + Delta-G solvation = -26040.359753 eV Core-core repulsion = 21986.404796 eV Total energy + Delta-G solvation = -4053.954957 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -43.21329 -41.66858 -39.90099 -38.68839 -37.41897 -34.94009 -34.68225 -33.54176 -32.41926 -32.07103 -31.38162 -29.09934 -28.86732 -26.34809 -24.57419 -24.15498 -23.46167 -22.70288 -22.05653 -21.41794 -19.31081 -18.86745 -18.69310 -18.15166 -17.90732 -17.05857 -17.00112 -16.84486 -16.42905 -16.28424 -15.89447 -15.65370 -15.15779 -14.93151 -14.56703 -14.54005 -14.28145 -14.02470 -13.82910 -13.72210 -13.50239 -13.28397 -13.13044 -12.90612 -12.84363 -12.69613 -12.46766 -12.23886 -12.01248 -11.74873 -11.65769 -11.59220 -11.26732 -11.22928 -10.88321 -10.87210 -10.25425 -10.13968 -9.76467 -8.31100 -6.42862 -0.79234 0.27104 0.52418 1.25208 1.41305 1.43801 1.55130 1.56092 1.58589 1.90546 2.35688 2.73371 2.75075 3.02819 3.07749 3.35375 3.51203 3.75627 3.86602 3.87465 3.93685 4.12405 4.18098 4.31403 4.42412 4.51184 4.58848 4.63514 4.69528 4.70910 4.84812 4.87520 4.95501 5.02959 5.11890 5.17647 5.19639 5.25313 5.32617 5.37178 5.55736 5.64667 5.96694 6.13192 6.50880 6.60546 6.81226 6.92032 7.28540 8.81033 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.010419 B = 0.002301 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2686.737663 B =12167.170957 C =14406.713532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.294 3.706 3 N -0.563 5.563 4 C 0.250 3.750 5 C 0.011 3.989 6 C -0.088 4.088 7 C -0.062 4.062 8 C -0.124 4.124 9 C 0.508 3.492 10 O -0.530 6.530 11 O -0.350 6.350 12 C 0.078 3.922 13 C 0.054 3.946 14 O -0.409 6.409 15 C 0.208 3.792 16 C -0.549 4.549 17 H 0.059 0.941 18 C 0.007 3.993 19 N -0.929 5.929 20 Si 0.981 3.019 21 H -0.268 1.268 22 H -0.273 1.273 23 H -0.266 1.266 24 C -0.053 4.053 25 C -0.092 4.092 26 N -0.320 5.320 27 N -0.469 5.469 28 H 0.459 0.541 29 H 0.111 0.889 30 H 0.115 0.885 31 H 0.099 0.901 32 H 0.150 0.850 33 H 0.145 0.855 34 H 0.073 0.927 35 H 0.111 0.889 36 H 0.084 0.916 37 H 0.058 0.942 38 H -0.008 1.008 39 H -0.009 1.009 40 H 0.271 0.729 41 H 0.154 0.846 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.716 -28.478 -7.614 31.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.016 3.984 3 N -0.292 5.292 4 C -0.030 4.030 5 C 0.008 3.992 6 C -0.108 4.108 7 C -0.080 4.080 8 C -0.126 4.126 9 C 0.355 3.645 10 O -0.422 6.422 11 O -0.266 6.266 12 C 0.005 3.995 13 C -0.023 4.023 14 O -0.329 6.329 15 C 0.133 3.867 16 C -0.586 4.586 17 H 0.077 0.923 18 C -0.191 4.191 19 N -0.568 5.568 20 Si 0.804 3.196 21 H -0.193 1.193 22 H -0.198 1.198 23 H -0.190 1.190 24 C -0.071 4.071 25 C -0.112 4.112 26 N -0.150 5.150 27 N -0.190 5.190 28 H 0.309 0.691 29 H 0.129 0.871 30 H 0.134 0.866 31 H 0.118 0.882 32 H 0.168 0.832 33 H 0.163 0.837 34 H 0.092 0.908 35 H 0.129 0.871 36 H 0.102 0.898 37 H 0.076 0.924 38 H 0.010 0.990 39 H 0.008 0.992 40 H 0.080 0.920 41 H 0.171 0.829 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -9.923 -28.588 -7.503 31.178 hybrid contribution -0.209 0.203 0.362 0.465 sum -10.132 -28.385 -7.140 30.973 Atomic orbital electron populations 1.20699 0.79809 1.06749 1.06284 1.25257 0.98333 0.81673 0.93134 1.70473 1.00963 1.31285 1.26507 1.22288 0.91881 0.89340 0.99451 1.17893 0.89539 0.91466 1.00286 1.21243 1.00184 0.91319 0.98042 1.21537 0.90614 1.01479 0.94376 1.19337 0.91382 0.93000 1.08920 1.21449 0.89135 0.81856 0.72055 1.90791 1.25807 1.78131 1.47473 1.86636 1.39138 1.17573 1.83291 1.23266 0.85032 0.87198 1.04029 1.22654 0.97776 0.93417 0.88467 1.87866 1.76289 1.30770 1.37992 1.19871 0.92661 0.77850 0.96321 1.21374 1.37589 0.96591 1.03077 0.92277 1.25928 0.96490 0.94829 1.01891 1.70057 1.46631 1.02230 1.37865 0.85209 0.78203 0.78264 0.77915 1.19350 1.19777 1.19005 1.21266 1.00724 0.90256 0.94865 1.21202 0.89801 1.01221 0.98952 1.78118 0.98725 1.11302 1.26855 1.47946 1.02889 1.11253 1.56893 0.69088 0.87062 0.86602 0.88194 0.83230 0.83678 0.90819 0.87064 0.89844 0.92378 0.98985 0.99151 0.92011 0.82873 0.82665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.20 10.51 71.24 0.75 0.55 16 2 C 0.29 3.86 8.22 138.24 1.14 4.99 16 3 N -0.56 -12.09 10.81 -181.02 -1.96 -14.05 16 4 C 0.25 5.79 7.77 137.40 1.07 6.85 16 5 C 0.01 0.25 5.88 -19.99 -0.12 0.14 16 6 C -0.09 -2.09 9.67 22.44 0.22 -1.87 16 7 C -0.06 -1.60 9.60 22.50 0.22 -1.38 16 8 C -0.12 -3.38 5.88 -20.07 -0.12 -3.50 16 9 C 0.51 16.19 7.89 70.29 0.55 16.75 16 10 O -0.53 -18.16 16.12 19.85 0.32 -17.84 16 11 O -0.35 -12.03 9.43 -53.75 -0.51 -12.54 16 12 C 0.08 2.47 5.85 71.98 0.42 2.90 16 13 C 0.05 1.96 6.33 71.98 0.46 2.41 16 14 O -0.41 -20.25 10.30 -145.57 -1.50 -21.75 16 15 C 0.21 11.69 5.69 71.23 0.41 12.10 16 16 C -0.55 -33.03 9.43 25.60 0.24 -32.79 16 17 H 0.06 3.56 7.81 -2.90 -0.02 3.53 16 18 C 0.01 0.42 5.46 84.65 0.46 0.88 16 19 N -0.93 -55.75 13.29 21.45 0.28 -55.47 16 20 Si 0.98 44.73 29.54 68.60 2.03 46.75 16 21 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 22 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 23 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 24 C -0.05 -1.21 9.58 22.50 0.22 -0.99 16 25 C -0.09 -1.92 9.66 22.44 0.22 -1.70 16 26 N -0.32 -6.54 12.41 -52.39 -0.65 -7.19 16 27 N -0.47 -5.70 7.44 -50.73 -0.38 -6.08 16 28 H 0.46 1.64 8.96 -213.11 -1.91 -0.27 16 29 H 0.11 -0.01 8.14 -2.39 -0.02 -0.03 16 30 H 0.12 -0.40 8.14 -2.39 -0.02 -0.42 16 31 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.15 3.36 7.82 -2.91 -0.02 3.33 16 33 H 0.15 3.87 7.60 -2.91 -0.02 3.85 16 34 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.11 2.81 8.14 -2.39 -0.02 2.80 16 36 H 0.08 2.71 8.14 -2.38 -0.02 2.69 16 37 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 38 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 39 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 40 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 41 H 0.15 3.13 7.64 -2.91 -0.02 3.11 16 42 H 0.16 2.69 7.82 -2.91 -0.02 2.67 16 Total: -1.00 -79.70 377.30 2.92 -76.79 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -0.85 Total: 6.04 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: 6.12 Total: 5.33 kcal Atomic # 7 Polarization: -80.08 SS G_CDS: -2.70 Total: -82.78 kcal Atomic # 8 Polarization: -50.44 SS G_CDS: -1.69 Total: -52.13 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -79.70 2.92 -76.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815215196.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.800 kcal (2) G-P(sol) polarization free energy of solvation -79.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds