Wall clock time and date at job start Tue Mar 31 2020 16:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47200 * 2 1 4 4 H 1.08998 * 109.47210 * 55.00039 * 3 2 1 5 5 C 1.50696 * 109.47390 * 175.00030 * 3 2 1 6 6 H 1.08001 * 120.00034 * 119.99705 * 5 3 2 7 7 C 1.37880 * 119.99770 * 300.00277 * 5 3 2 8 8 N 1.31515 * 119.99791 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 119.99888 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46903 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47080 * 119.99779 * 9 7 5 12 12 H 1.48496 * 109.47017 * 239.99779 * 9 7 5 13 13 O 1.45206 * 109.47267 * 295.00320 * 3 2 1 14 14 C 1.34750 * 117.00314 * 89.99362 * 13 3 2 15 15 O 1.21517 * 119.99923 * 0.02562 * 14 13 3 16 16 C 1.47373 * 120.00031 * 179.97438 * 14 13 3 17 17 C 1.36693 * 125.77805 * 180.02562 * 16 14 13 18 18 N 1.35039 * 106.78998 * 180.02562 * 17 16 14 19 19 C 1.40225 * 126.60122 * 180.02562 * 18 17 16 20 20 C 1.38880 * 120.03899 * 5.03039 * 19 18 17 21 21 C 1.38131 * 120.04386 * 179.97438 * 20 19 18 22 22 C 1.38214 * 120.12198 * 359.97317 * 21 20 19 23 23 C 1.38750 * 120.07595 * 0.02562 * 22 21 20 24 24 O 1.35900 * 120.02388 * 180.02562 * 23 22 21 25 25 C 1.42891 * 117.00129 * 0.02562 * 24 23 22 26 26 C 1.38641 * 119.95556 * 359.74948 * 23 22 21 27 27 N 1.40209 * 106.79352 * 0.02562 * 18 17 16 28 28 N 1.28754 * 108.40120 * 359.97438 * 27 18 17 29 29 H 1.09001 * 109.47155 * 59.99935 * 1 2 3 30 30 H 1.08997 * 109.47229 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47038 * 300.00215 * 1 2 3 32 32 H 1.09003 * 109.46718 * 240.00223 * 2 1 3 33 33 H 1.08992 * 109.47034 * 119.99993 * 2 1 3 34 34 H 0.97000 * 119.99317 * 179.97438 * 8 7 5 35 35 H 1.08001 * 126.60229 * 359.97438 * 17 16 14 36 36 H 1.07994 * 119.97826 * 359.95160 * 20 19 18 37 37 H 1.08001 * 119.93948 * 180.02562 * 21 20 19 38 38 H 1.07997 * 119.95848 * 180.02562 * 22 21 20 39 39 H 1.08994 * 109.47632 * 180.02562 * 25 24 23 40 40 H 1.09003 * 109.46905 * 299.99767 * 25 24 23 41 41 H 1.09003 * 109.47494 * 59.99882 * 25 24 23 42 42 H 1.07997 * 120.06380 * 180.27245 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 3.4061 0.3374 2.1733 9 14 6.0050 0.8800 1.3811 10 1 6.5988 1.5442 0.1931 11 1 6.4000 1.6157 2.6091 12 1 6.4962 -0.5190 1.4627 13 8 1.6559 2.0918 -1.2407 14 6 0.4681 2.7279 -1.2561 15 8 -0.2275 2.7402 -0.2597 16 6 0.0131 3.4097 -2.4808 17 6 -1.1645 4.0882 -2.6273 18 7 -1.1901 4.5561 -3.8938 19 6 -2.2123 5.3122 -4.4852 20 6 -3.2920 5.7384 -3.7227 21 6 -4.2987 6.4836 -4.3050 22 6 -4.2342 6.8075 -5.6472 23 6 -3.1579 6.3843 -6.4137 24 8 -3.0954 6.7038 -7.7331 25 6 -4.1721 7.4783 -8.2648 26 6 -2.1434 5.6401 -5.8314 27 7 0.0021 4.1404 -4.5035 28 7 0.6857 3.4688 -3.6435 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 3.8293 -0.0610 2.9498 35 1 -1.9278 4.2232 -1.8752 36 1 -3.3446 5.4867 -2.6738 37 1 -5.1373 6.8146 -3.7104 38 1 -5.0226 7.3907 -6.0997 39 1 -3.9985 7.6622 -9.3250 40 1 -5.1079 6.9336 -8.1394 41 1 -4.2315 8.4294 -7.7357 42 1 -1.3026 5.3136 -6.4254 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835340064.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:49:11 Heat of formation + Delta-G solvation = 7.544439 kcal Electronic energy + Delta-G solvation = -27053.607532 eV Core-core repulsion = 23002.103906 eV Total energy + Delta-G solvation = -4051.503626 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.51155 -40.63000 -39.37790 -38.18546 -35.80533 -34.61552 -33.44356 -31.77990 -31.36403 -30.74879 -29.88151 -27.87781 -27.27888 -24.72728 -24.37454 -23.20359 -22.58074 -21.59481 -20.66433 -19.74739 -19.09797 -17.48750 -16.91444 -16.68877 -16.45162 -16.42853 -16.27584 -16.13545 -15.39254 -15.08490 -14.89081 -14.51059 -14.34392 -14.09754 -13.44410 -13.11051 -12.94034 -12.81287 -12.56251 -12.26330 -12.15547 -11.93546 -11.60161 -11.46689 -11.31729 -11.26296 -11.17068 -11.11528 -10.93314 -10.61509 -10.24507 -9.93249 -9.70930 -9.64238 -9.36250 -9.08063 -8.77446 -8.74336 -8.42039 -6.14839 -4.20797 0.10085 0.79669 1.43901 1.67687 1.76043 2.71184 3.16116 3.27737 3.33128 3.37197 3.47859 3.50843 4.13132 4.15392 4.31950 4.38868 4.44636 4.48547 4.58789 4.62817 4.76002 4.77695 4.96991 5.06795 5.10712 5.17840 5.37366 5.60072 5.73943 5.81366 5.83198 5.97093 6.25435 6.32858 6.41969 6.47497 6.78754 6.88343 6.96731 7.18595 7.22287 7.63934 7.75747 7.81835 7.95533 8.18329 8.60694 8.91851 9.43951 10.92150 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.027950 B = 0.002192 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.544838 B =12772.423517 C =13307.815110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.137 4.137 3 C 0.220 3.780 4 H 0.050 0.950 5 C -0.518 4.518 6 H 0.071 0.929 7 C 0.062 3.938 8 N -0.889 5.889 9 Si 0.911 3.089 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.281 1.281 13 O -0.332 6.332 14 C 0.543 3.457 15 O -0.510 6.510 16 C -0.061 4.061 17 C 0.094 3.906 18 N -0.320 5.320 19 C 0.182 3.818 20 C -0.164 4.164 21 C -0.054 4.054 22 C -0.208 4.208 23 C 0.150 3.850 24 O -0.311 6.311 25 C 0.026 3.974 26 C -0.141 4.141 27 N -0.058 5.058 28 N -0.165 5.165 29 H 0.030 0.970 30 H 0.034 0.966 31 H 0.054 0.946 32 H 0.043 0.957 33 H 0.110 0.890 34 H 0.265 0.735 35 H 0.211 0.789 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.137 0.863 39 H 0.103 0.897 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.739 14.015 -15.871 28.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.175 4.175 3 C 0.168 3.832 4 H 0.067 0.933 5 C -0.556 4.556 6 H 0.089 0.911 7 C -0.140 4.140 8 N -0.527 5.527 9 Si 0.738 3.262 10 H -0.194 1.194 11 H -0.208 1.208 12 H -0.207 1.207 13 O -0.247 6.247 14 C 0.384 3.616 15 O -0.399 6.399 16 C -0.197 4.197 17 C -0.058 4.058 18 N -0.098 5.098 19 C 0.090 3.910 20 C -0.185 4.185 21 C -0.072 4.072 22 C -0.227 4.227 23 C 0.104 3.896 24 O -0.224 6.224 25 C -0.069 4.069 26 C -0.162 4.162 27 N -0.037 5.037 28 N -0.040 5.040 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.128 0.872 34 H 0.075 0.925 35 H 0.228 0.772 36 H 0.157 0.843 37 H 0.158 0.842 38 H 0.154 0.846 39 H 0.122 0.878 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -18.840 13.813 -16.755 28.748 hybrid contribution -0.051 0.078 1.127 1.131 sum -18.891 13.891 -15.628 28.179 Atomic orbital electron populations 1.21868 0.98426 0.99106 1.00666 1.22035 0.92628 0.99250 1.03553 1.20806 0.95263 0.88837 0.78281 0.93250 1.21097 0.89564 1.38711 1.06229 0.91060 1.24878 0.99260 0.94781 0.95052 1.69900 1.35257 1.38043 1.09500 0.86222 0.83907 0.77855 0.78211 1.19396 1.20807 1.20742 1.86646 1.32411 1.61548 1.44052 1.19244 0.81516 0.76386 0.84462 1.90824 1.55948 1.59377 1.33776 1.20783 0.94811 1.09303 0.94801 1.23320 0.99679 0.95245 0.87562 1.47602 1.15997 1.36846 1.09385 1.17171 0.87052 0.94581 0.92206 1.20905 0.94093 1.02706 1.00775 1.20782 0.97464 0.94956 0.94024 1.21399 0.99678 1.06168 0.95474 1.18622 0.93453 0.94009 0.83541 1.86113 1.46462 1.68862 1.20958 1.23141 0.89124 0.94586 1.00057 1.20016 1.00746 1.02525 0.92878 1.82163 0.89644 1.14647 1.17292 1.74870 1.21821 1.08049 0.99260 0.95043 0.94731 0.92718 0.93775 0.87172 0.92481 0.77233 0.84318 0.84151 0.84553 0.87832 0.92327 0.92314 0.83111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.56 37.16 0.32 -2.83 16 2 C -0.14 -3.43 5.49 -26.73 -0.15 -3.58 16 3 C 0.22 5.94 2.25 -27.88 -0.06 5.88 16 4 H 0.05 1.44 7.16 -51.93 -0.37 1.07 16 5 C -0.52 -14.76 8.90 -34.44 -0.31 -15.07 16 6 H 0.07 2.04 7.81 -52.49 -0.41 1.63 16 7 C 0.06 1.72 5.29 -17.82 -0.09 1.63 16 8 N -0.89 -25.13 11.29 55.43 0.63 -24.51 16 9 Si 0.91 21.40 29.54 -169.99 -5.02 16.38 16 10 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 O -0.33 -8.31 9.81 -40.63 -0.40 -8.71 16 14 C 0.54 11.80 6.41 34.45 0.22 12.02 16 15 O -0.51 -11.39 14.05 -19.28 -0.27 -11.66 16 16 C -0.06 -1.12 7.02 -83.56 -0.59 -1.70 16 17 C 0.09 1.28 10.60 -16.70 -0.18 1.11 16 18 N -0.32 -4.29 3.82 -10.43 -0.04 -4.33 16 19 C 0.18 1.93 6.68 -83.60 -0.56 1.37 16 20 C -0.16 -1.27 9.47 -39.38 -0.37 -1.64 16 21 C -0.05 -0.31 10.03 -39.63 -0.40 -0.71 16 22 C -0.21 -1.28 9.04 -39.40 -0.36 -1.64 16 23 C 0.15 1.27 6.68 -39.24 -0.26 1.01 16 24 O -0.31 -2.51 10.49 -19.42 -0.20 -2.72 16 25 C 0.03 0.10 9.81 101.05 0.99 1.09 16 26 C -0.14 -1.46 9.62 -39.25 -0.38 -1.83 16 27 N -0.06 -0.96 13.13 60.35 0.79 -0.16 16 28 N -0.17 -3.13 12.39 32.84 0.41 -2.72 16 29 H 0.03 0.67 6.06 -51.93 -0.31 0.35 16 30 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 1.23 7.79 -51.93 -0.40 0.82 16 32 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.11 2.97 5.95 -51.93 -0.31 2.66 16 34 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 35 H 0.21 2.03 7.15 -52.49 -0.38 1.65 16 36 H 0.14 0.82 6.83 -52.49 -0.36 0.46 16 37 H 0.14 0.43 8.06 -52.49 -0.42 0.00 16 38 H 0.14 0.48 6.29 -52.49 -0.33 0.15 16 39 H 0.10 0.23 8.14 -51.93 -0.42 -0.20 16 40 H 0.06 0.15 7.66 -51.93 -0.40 -0.25 16 41 H 0.06 0.15 7.66 -51.93 -0.40 -0.25 16 42 H 0.15 1.67 7.73 -52.49 -0.41 1.26 16 LS Contribution 360.57 15.07 5.43 5.43 Total: -1.00 -33.28 360.57 -5.74 -39.03 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -4.90 Total: -1.13 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: -2.17 Total: -4.91 kcal Atomic # 7 Polarization: -33.51 SS G_CDS: 1.79 Total: -31.72 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -0.87 Total: -23.09 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.28 -5.74 -39.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835340064.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.572 kcal (2) G-P(sol) polarization free energy of solvation -33.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds