Wall clock time and date at job start Tue Mar 31 2020 16:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47200 * 2 1 4 4 H 1.08998 * 109.47210 * 55.00039 * 3 2 1 5 5 C 1.50696 * 109.47390 * 175.00030 * 3 2 1 6 6 H 1.08001 * 120.00034 * 119.99705 * 5 3 2 7 7 C 1.37880 * 119.99770 * 300.00277 * 5 3 2 8 8 N 1.31515 * 119.99791 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 119.99888 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46903 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47080 * 119.99779 * 9 7 5 12 12 H 1.48496 * 109.47017 * 239.99779 * 9 7 5 13 13 O 1.45206 * 109.47267 * 295.00320 * 3 2 1 14 14 C 1.34750 * 117.00314 * 89.99362 * 13 3 2 15 15 O 1.21517 * 119.99923 * 0.02562 * 14 13 3 16 16 C 1.47373 * 120.00031 * 179.97438 * 14 13 3 17 17 C 1.36693 * 125.77805 * 180.02562 * 16 14 13 18 18 N 1.35039 * 106.78998 * 180.02562 * 17 16 14 19 19 C 1.40225 * 126.60122 * 180.02562 * 18 17 16 20 20 C 1.38880 * 120.03899 * 5.03039 * 19 18 17 21 21 C 1.38131 * 120.04386 * 179.97438 * 20 19 18 22 22 C 1.38214 * 120.12198 * 359.97317 * 21 20 19 23 23 C 1.38750 * 120.07595 * 0.02562 * 22 21 20 24 24 O 1.35900 * 120.02388 * 180.02562 * 23 22 21 25 25 C 1.42891 * 117.00129 * 0.02562 * 24 23 22 26 26 C 1.38641 * 119.95556 * 359.74948 * 23 22 21 27 27 N 1.40209 * 106.79352 * 0.02562 * 18 17 16 28 28 N 1.28754 * 108.40120 * 359.97438 * 27 18 17 29 29 H 1.09001 * 109.47155 * 59.99935 * 1 2 3 30 30 H 1.08997 * 109.47229 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47038 * 300.00215 * 1 2 3 32 32 H 1.09003 * 109.46718 * 240.00223 * 2 1 3 33 33 H 1.08992 * 109.47034 * 119.99993 * 2 1 3 34 34 H 0.97000 * 119.99317 * 179.97438 * 8 7 5 35 35 H 1.08001 * 126.60229 * 359.97438 * 17 16 14 36 36 H 1.07994 * 119.97826 * 359.95160 * 20 19 18 37 37 H 1.08001 * 119.93948 * 180.02562 * 21 20 19 38 38 H 1.07997 * 119.95848 * 180.02562 * 22 21 20 39 39 H 1.08994 * 109.47632 * 180.02562 * 25 24 23 40 40 H 1.09003 * 109.46905 * 299.99767 * 25 24 23 41 41 H 1.09003 * 109.47494 * 59.99882 * 25 24 23 42 42 H 1.07997 * 120.06380 * 180.27245 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 3.4061 0.3374 2.1733 9 14 6.0050 0.8800 1.3811 10 1 6.5988 1.5442 0.1931 11 1 6.4000 1.6157 2.6091 12 1 6.4962 -0.5190 1.4627 13 8 1.6559 2.0918 -1.2407 14 6 0.4681 2.7279 -1.2561 15 8 -0.2275 2.7402 -0.2597 16 6 0.0131 3.4097 -2.4808 17 6 -1.1645 4.0882 -2.6273 18 7 -1.1901 4.5561 -3.8938 19 6 -2.2123 5.3122 -4.4852 20 6 -3.2920 5.7384 -3.7227 21 6 -4.2987 6.4836 -4.3050 22 6 -4.2342 6.8075 -5.6472 23 6 -3.1579 6.3843 -6.4137 24 8 -3.0954 6.7038 -7.7331 25 6 -4.1721 7.4783 -8.2648 26 6 -2.1434 5.6401 -5.8314 27 7 0.0021 4.1404 -4.5035 28 7 0.6857 3.4688 -3.6435 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 3.8293 -0.0610 2.9498 35 1 -1.9278 4.2232 -1.8752 36 1 -3.3446 5.4867 -2.6738 37 1 -5.1373 6.8146 -3.7104 38 1 -5.0226 7.3907 -6.0997 39 1 -3.9985 7.6622 -9.3250 40 1 -5.1079 6.9336 -8.1394 41 1 -4.2315 8.4294 -7.7357 42 1 -1.3026 5.3136 -6.4254 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835340064.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:49:10 Heat of formation + Delta-G solvation = -13.311806 kcal Electronic energy + Delta-G solvation = -27054.511926 eV Core-core repulsion = 23002.103906 eV Total energy + Delta-G solvation = -4052.408020 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.70244 -41.31673 -41.06053 -38.83433 -37.66813 -35.66666 -35.38086 -33.37708 -32.67918 -31.72233 -30.65400 -29.32535 -28.23342 -26.09547 -25.40874 -24.89762 -23.66368 -22.48187 -22.19240 -21.35321 -20.18937 -18.92027 -18.41931 -17.81362 -17.64481 -17.44899 -17.15449 -16.86762 -16.78397 -16.58302 -16.36283 -15.98043 -15.00843 -14.88847 -14.76457 -14.66677 -14.24116 -13.92943 -13.67751 -13.37322 -13.34112 -13.22932 -13.12865 -12.83616 -12.82259 -12.68288 -12.62060 -12.53376 -12.14296 -11.98954 -11.84311 -11.77720 -11.62036 -11.37942 -10.82955 -10.80733 -10.51888 -9.87125 -9.36880 -8.26924 -6.42449 -0.78066 0.22190 0.25894 0.61241 0.68189 1.41765 1.42511 1.55980 1.83507 1.91393 2.21661 2.40198 2.55635 2.99891 3.02436 3.32858 3.57782 3.67784 3.74558 3.90224 4.00089 4.12061 4.30387 4.37931 4.40440 4.42046 4.42997 4.46479 4.58661 4.61861 4.78681 4.84478 5.03719 5.10962 5.15628 5.21229 5.23009 5.25578 5.35117 5.51962 5.64359 5.67815 5.91033 6.09740 6.30083 6.51874 6.64343 6.93192 7.27675 8.80117 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.027950 B = 0.002192 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.544838 B =12772.423517 C =13307.815110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.131 4.131 3 C 0.225 3.775 4 H 0.019 0.981 5 C -0.551 4.551 6 H 0.059 0.941 7 C 0.021 3.979 8 N -0.910 5.910 9 Si 0.979 3.021 10 H -0.270 1.270 11 H -0.272 1.272 12 H -0.270 1.270 13 O -0.352 6.352 14 C 0.543 3.457 15 O -0.521 6.521 16 C -0.096 4.096 17 C 0.127 3.873 18 N -0.303 5.303 19 C 0.145 3.855 20 C -0.157 4.157 21 C -0.045 4.045 22 C -0.191 4.191 23 C 0.140 3.860 24 O -0.336 6.336 25 C 0.015 3.985 26 C -0.162 4.162 27 N -0.074 5.074 28 N -0.202 5.202 29 H 0.033 0.967 30 H 0.062 0.938 31 H 0.045 0.955 32 H 0.040 0.960 33 H 0.091 0.909 34 H 0.272 0.728 35 H 0.254 0.746 36 H 0.162 0.838 37 H 0.181 0.819 38 H 0.170 0.830 39 H 0.115 0.885 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.550 15.577 -16.100 31.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.169 4.169 3 C 0.172 3.828 4 H 0.037 0.963 5 C -0.588 4.588 6 H 0.077 0.923 7 C -0.179 4.179 8 N -0.548 5.548 9 Si 0.802 3.198 10 H -0.194 1.194 11 H -0.198 1.198 12 H -0.195 1.195 13 O -0.267 6.267 14 C 0.386 3.614 15 O -0.410 6.410 16 C -0.232 4.232 17 C -0.027 4.027 18 N -0.080 5.080 19 C 0.055 3.945 20 C -0.177 4.177 21 C -0.063 4.063 22 C -0.210 4.210 23 C 0.094 3.906 24 O -0.250 6.250 25 C -0.079 4.079 26 C -0.183 4.183 27 N -0.054 5.054 28 N -0.076 5.076 29 H 0.052 0.948 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.109 0.891 34 H 0.081 0.919 35 H 0.270 0.730 36 H 0.179 0.821 37 H 0.198 0.802 38 H 0.187 0.813 39 H 0.134 0.866 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -21.686 15.398 -17.027 31.580 hybrid contribution 0.577 -0.219 1.049 1.217 sum -21.108 15.179 -15.978 30.516 Atomic orbital electron populations 1.21724 0.95910 1.00828 1.00308 1.21886 0.94865 0.97833 1.02308 1.20530 0.94621 0.89499 0.78171 0.96346 1.21326 0.90607 1.40067 1.06841 0.92264 1.25730 1.04056 0.93839 0.94305 1.69994 1.37190 1.37818 1.09786 0.85199 0.77942 0.78380 0.78271 1.19424 1.19766 1.19508 1.86623 1.34568 1.62500 1.42999 1.19657 0.80304 0.75811 0.85673 1.90792 1.55836 1.59856 1.34561 1.20502 0.96979 1.12005 0.93727 1.23810 0.98478 0.92409 0.87957 1.47747 1.15495 1.35660 1.09114 1.17547 0.87666 0.96522 0.92809 1.21292 0.92991 1.01790 1.01658 1.21285 0.97628 0.93322 0.94086 1.21837 0.99032 1.04608 0.95532 1.18729 0.93694 0.94065 0.84148 1.86089 1.48453 1.69569 1.20880 1.23462 0.88634 0.94927 1.00843 1.20009 1.01226 1.03927 0.93107 1.82079 0.90971 1.15042 1.17271 1.74832 1.23313 1.09514 0.99974 0.94778 0.91899 0.93573 0.94109 0.89074 0.91902 0.72971 0.82064 0.80176 0.81294 0.86649 0.90782 0.90816 0.85349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.74 8.56 71.98 0.62 -5.13 16 2 C -0.13 -6.77 5.49 30.60 0.17 -6.61 16 3 C 0.22 12.65 2.25 29.85 0.07 12.72 16 4 H 0.02 1.15 7.16 -2.39 -0.02 1.13 16 5 C -0.55 -32.62 8.90 25.60 0.23 -32.39 16 6 H 0.06 3.55 7.81 -2.91 -0.02 3.52 16 7 C 0.02 1.17 5.29 84.66 0.45 1.62 16 8 N -0.91 -52.32 11.29 21.45 0.24 -52.08 16 9 Si 0.98 44.34 29.54 68.60 2.03 46.36 16 10 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 11 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 12 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 13 O -0.35 -18.49 9.81 -56.60 -0.56 -19.04 16 14 C 0.54 24.37 6.41 70.23 0.45 24.82 16 15 O -0.52 -23.67 14.05 19.78 0.28 -23.39 16 16 C -0.10 -3.56 7.02 40.79 0.29 -3.27 16 17 C 0.13 3.33 10.60 83.84 0.89 4.22 16 18 N -0.30 -7.99 3.82 -186.90 -0.71 -8.70 16 19 C 0.15 2.90 6.68 38.07 0.25 3.15 16 20 C -0.16 -1.86 9.47 22.40 0.21 -1.65 16 21 C -0.04 -0.31 10.03 22.24 0.22 -0.09 16 22 C -0.19 -1.59 9.04 22.39 0.20 -1.39 16 23 C 0.14 2.15 6.68 22.49 0.15 2.30 16 24 O -0.34 -5.05 10.49 -92.42 -0.97 -6.02 16 25 C 0.02 0.07 9.81 113.37 1.11 1.19 16 26 C -0.16 -3.35 9.62 22.48 0.22 -3.13 16 27 N -0.07 -2.54 13.13 37.02 0.49 -2.05 16 28 N -0.20 -8.02 12.39 -50.02 -0.62 -8.64 16 29 H 0.03 1.45 6.06 -2.39 -0.01 1.44 16 30 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.05 2.08 7.79 -2.39 -0.02 2.06 16 32 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.09 5.06 5.95 -2.39 -0.01 5.05 16 34 H 0.27 14.51 8.31 -92.71 -0.77 13.73 16 35 H 0.25 4.07 7.15 -2.91 -0.02 4.05 16 36 H 0.16 1.14 6.83 -2.91 -0.02 1.12 16 37 H 0.18 -0.10 8.06 -2.91 -0.02 -0.13 16 38 H 0.17 0.29 6.29 -2.91 -0.02 0.27 16 39 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 40 H 0.07 0.13 7.66 -2.39 -0.02 0.11 16 41 H 0.07 0.14 7.66 -2.39 -0.02 0.12 16 42 H 0.13 3.11 7.73 -2.91 -0.02 3.09 16 Total: -1.00 -77.32 360.57 6.76 -70.56 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: 1.06 Total: 6.65 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: 5.52 Total: -3.64 kcal Atomic # 7 Polarization: -70.87 SS G_CDS: -0.60 Total: -71.48 kcal Atomic # 8 Polarization: -47.20 SS G_CDS: -1.25 Total: -48.45 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -77.32 6.76 -70.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835340064.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.244 kcal (2) G-P(sol) polarization free energy of solvation -77.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds