Wall clock time and date at job start Tue Mar 31 2020 16:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30831 * 125.95963 * 2 1 4 4 C 1.33248 * 109.82461 * 180.11876 * 3 2 1 5 5 C 1.50701 * 125.52307 * 179.85271 * 4 3 2 6 6 H 1.09001 * 109.47271 * 14.72605 * 5 4 3 7 7 C 1.52995 * 109.47411 * 254.71875 * 5 4 3 8 8 O 1.45206 * 109.47051 * 134.72016 * 5 4 3 9 9 C 1.34224 * 116.99931 * 210.00501 * 8 5 4 10 10 O 1.20826 * 120.00392 * 359.97438 * 9 8 5 11 11 C 1.50704 * 119.99730 * 180.02562 * 9 8 5 12 12 C 1.50701 * 109.46827 * 179.97438 * 11 9 8 13 13 C 1.38307 * 119.92751 * 269.72046 * 12 11 9 14 14 C 1.38105 * 120.06147 * 179.73104 * 13 12 11 15 15 C 1.38872 * 119.93430 * 0.56469 * 14 13 12 16 16 O 1.35750 * 120.06955 * 179.68276 * 15 14 13 17 17 C 1.34838 * 116.99807 * 174.49013 * 16 15 14 18 18 H 1.07994 * 119.99916 * 5.06161 * 17 16 15 19 19 C 1.38659 * 119.99657 * 185.05899 * 17 16 15 20 20 N 1.31558 * 119.99707 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99828 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47037 * 90.00289 * 21 19 17 23 23 H 1.48508 * 109.46833 * 209.99679 * 21 19 17 24 24 H 1.48498 * 109.47512 * 329.99801 * 21 19 17 25 25 C 1.38887 * 119.86270 * 359.71205 * 15 14 13 26 26 C 1.38093 * 119.92815 * 359.97438 * 25 15 14 27 27 N 1.30706 * 108.94831 * 359.59442 * 4 3 2 28 28 N 1.34431 * 125.95942 * 179.66695 * 2 1 3 29 29 H 0.97004 * 126.82749 * 0.02562 * 28 2 1 30 30 H 1.08993 * 109.47151 * 270.30323 * 1 2 3 31 31 H 1.09002 * 109.46962 * 30.30994 * 1 2 3 32 32 H 1.09005 * 109.46961 * 150.29816 * 1 2 3 33 33 H 1.09005 * 109.47044 * 60.00368 * 7 5 4 34 34 H 1.09005 * 109.47421 * 179.97438 * 7 5 4 35 35 H 1.09001 * 109.47499 * 300.00590 * 7 5 4 36 36 H 1.09004 * 109.47152 * 299.99393 * 11 9 8 37 37 H 1.08996 * 109.47344 * 59.99825 * 11 9 8 38 38 H 1.07994 * 119.96598 * 359.97438 * 13 12 11 39 39 H 1.07999 * 120.02925 * 180.28229 * 14 13 12 40 40 H 0.96992 * 119.99657 * 179.97438 * 20 19 17 41 41 H 1.08003 * 120.03351 * 179.97438 * 25 15 14 42 42 H 1.07999 * 119.96394 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5553 0.6887 -0.0026 5 6 4.7372 1.6236 -0.0066 6 1 4.4063 2.6288 0.2542 7 6 5.3698 1.6401 -1.3996 8 8 5.7168 1.1695 0.9644 9 6 6.4798 2.1087 1.5451 10 8 6.3344 3.2717 1.2516 11 6 7.5186 1.7125 2.5625 12 6 8.2324 2.9441 3.0572 13 6 9.3737 3.3858 2.4128 14 6 10.0269 4.5172 2.8604 15 6 9.5435 5.2049 3.9659 16 8 10.1871 6.3136 4.4121 17 6 9.6030 6.9979 5.4165 18 1 8.7087 6.6128 5.8836 19 6 10.1508 8.1958 5.8496 20 7 9.5812 8.8631 6.8299 21 14 11.6973 8.8620 5.0411 22 1 11.3225 9.7330 3.8983 23 1 12.4729 9.6513 6.0315 24 1 12.5260 7.7315 4.5509 25 6 8.4005 4.7554 4.6143 26 6 7.7481 3.6271 4.1580 27 7 3.6194 -0.6168 0.0045 28 7 2.2964 -1.0881 0.0063 29 1 2.0093 -2.0147 0.0114 30 1 -0.3633 0.0054 1.0276 31 1 -0.3633 0.8872 -0.5187 32 1 -0.3633 -0.8927 -0.5092 33 1 4.6345 1.9810 -2.1285 34 1 6.2245 2.3166 -1.4026 35 1 5.7007 0.6348 -1.6603 36 1 7.0339 1.2118 3.4007 37 1 8.2385 1.0360 2.1021 38 1 9.7521 2.8476 1.5564 39 1 10.9155 4.8643 2.3540 40 1 9.9645 9.7009 7.1331 41 1 8.0223 5.2878 5.4745 42 1 6.8590 3.2774 4.6615 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840227372.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:24 Heat of formation + Delta-G solvation = -2.170259 kcal Electronic energy + Delta-G solvation = -26599.820288 eV Core-core repulsion = 22547.895402 eV Total energy + Delta-G solvation = -4051.924887 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.60605 -40.52906 -39.13061 -37.21479 -36.31650 -34.01294 -32.82550 -32.53879 -31.85556 -31.11631 -30.24377 -28.41140 -27.18480 -25.23193 -24.69355 -22.34074 -22.07247 -21.32080 -20.49241 -20.04902 -18.40323 -17.89034 -17.57625 -17.27931 -16.61112 -16.35703 -15.89818 -14.91784 -14.82233 -14.57949 -14.44238 -14.08498 -13.77147 -13.66368 -13.64520 -13.43098 -13.32365 -13.10428 -12.68577 -12.52894 -12.39368 -12.24607 -12.19260 -11.76261 -11.53715 -11.31343 -10.97957 -10.94276 -10.76495 -10.67482 -10.52425 -10.45051 -10.29913 -10.14507 -9.90899 -9.37640 -8.85406 -8.24108 -7.33216 -6.40487 -4.06871 1.11913 1.95041 2.16047 2.16781 2.29359 2.37406 2.79057 3.23632 3.27828 3.41899 3.57857 4.09263 4.25170 4.31661 4.47603 4.70482 4.75695 4.84787 4.86534 4.91766 5.06071 5.11622 5.14364 5.21373 5.23928 5.45844 5.54689 5.61022 5.66970 5.73054 5.75230 5.82628 5.95573 6.13713 6.32238 6.40966 6.57196 6.59800 6.79341 7.02214 7.20628 7.30108 7.61182 7.64379 7.81290 7.87964 8.04754 8.94596 9.56561 10.67036 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.024491 B = 0.002018 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.982905 B =13872.845779 C =14295.245798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.284 3.716 3 N -0.530 5.530 4 C 0.231 3.769 5 C 0.182 3.818 6 H 0.115 0.885 7 C -0.161 4.161 8 O -0.351 6.351 9 C 0.457 3.543 10 O -0.486 6.486 11 C -0.050 4.050 12 C -0.174 4.174 13 C -0.058 4.058 14 C -0.191 4.191 15 C 0.165 3.835 16 O -0.216 6.216 17 C -0.389 4.389 18 H 0.107 0.893 19 C 0.063 3.937 20 N -0.878 5.878 21 Si 0.906 3.094 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.259 1.259 25 C -0.220 4.220 26 C -0.054 4.054 27 N -0.284 5.284 28 N -0.483 5.483 29 H 0.441 0.559 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.113 0.887 39 H 0.118 0.882 40 H 0.279 0.721 41 H 0.134 0.866 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.274 -21.637 -14.650 30.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.006 3.994 3 N -0.260 5.260 4 C -0.052 4.052 5 C 0.124 3.876 6 H 0.132 0.868 7 C -0.219 4.219 8 O -0.268 6.268 9 C 0.299 3.701 10 O -0.371 6.371 11 C -0.087 4.087 12 C -0.175 4.175 13 C -0.076 4.076 14 C -0.211 4.211 15 C 0.112 3.888 16 O -0.120 6.120 17 C -0.465 4.465 18 H 0.124 0.876 19 C -0.140 4.140 20 N -0.516 5.516 21 Si 0.732 3.268 22 H -0.198 1.198 23 H -0.208 1.208 24 H -0.183 1.183 25 C -0.239 4.239 26 C -0.073 4.073 27 N -0.113 5.113 28 N -0.202 5.202 29 H 0.287 0.713 30 H 0.113 0.887 31 H 0.119 0.881 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.131 0.869 39 H 0.136 0.864 40 H 0.090 0.910 41 H 0.152 0.848 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -14.519 -20.956 -14.658 29.408 hybrid contribution -0.046 -0.175 -0.163 0.244 sum -14.565 -21.131 -14.821 29.636 Atomic orbital electron populations 1.20428 0.83269 1.05162 1.04857 1.24445 0.96735 0.82609 0.95647 1.70327 1.00839 1.29696 1.25162 1.23694 0.92593 0.89964 0.98995 1.20470 0.82552 0.95384 0.89207 0.86774 1.22152 1.02087 1.03753 0.93887 1.86613 1.46459 1.40778 1.52962 1.24240 0.81022 0.84198 0.80652 1.90714 1.66254 1.19781 1.60318 1.20115 0.94531 0.98084 0.96015 1.18702 0.99062 0.99337 1.00440 1.20430 0.94405 0.95116 0.97671 1.20153 1.03665 0.98548 0.98695 1.19144 0.90591 0.87214 0.91803 1.83573 1.45746 1.33751 1.48972 1.20784 1.11962 1.03664 1.10053 0.87563 1.24482 0.98929 0.94830 0.95806 1.69647 1.40043 1.15764 1.26158 0.86171 0.82172 0.79446 0.79053 1.19850 1.20790 1.18345 1.21229 0.98823 0.99620 1.04220 1.20596 0.97552 0.94131 0.94989 1.78103 0.96209 1.12136 1.24864 1.48089 1.04384 1.10184 1.57522 0.71275 0.88736 0.88124 0.89713 0.90397 0.90340 0.91061 0.87675 0.87526 0.86940 0.86392 0.91039 0.84829 0.87345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.23 10.51 36.01 0.38 0.15 16 2 C 0.28 2.27 8.24 -155.69 -1.28 0.98 16 3 N -0.53 -6.29 11.19 -8.16 -0.09 -6.38 16 4 C 0.23 2.91 7.04 -156.85 -1.10 1.80 16 5 C 0.18 2.31 3.12 -27.89 -0.09 2.23 16 6 H 0.11 1.58 7.16 -51.93 -0.37 1.21 16 7 C -0.16 -1.68 9.53 37.15 0.35 -1.32 16 8 O -0.35 -4.76 9.86 -39.24 -0.39 -5.15 16 9 C 0.46 6.70 7.92 36.01 0.29 6.99 16 10 O -0.49 -8.75 15.25 -18.75 -0.29 -9.03 16 11 C -0.05 -0.64 5.94 -29.03 -0.17 -0.81 16 12 C -0.17 -2.93 4.38 -104.57 -0.46 -3.39 16 13 C -0.06 -1.00 9.69 -39.60 -0.38 -1.39 16 14 C -0.19 -3.87 9.99 -39.40 -0.39 -4.26 16 15 C 0.16 3.89 6.65 -39.11 -0.26 3.63 16 16 O -0.22 -5.78 8.59 0.03 0.00 -5.78 16 17 C -0.39 -11.11 9.95 30.89 0.31 -10.80 16 18 H 0.11 3.10 5.44 -52.49 -0.29 2.81 16 19 C 0.06 1.78 5.49 -17.51 -0.10 1.69 16 20 N -0.88 -25.61 13.96 55.48 0.77 -24.83 16 21 Si 0.91 21.92 28.62 -169.99 -4.86 17.05 16 22 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.26 -6.28 7.11 56.52 0.40 -5.87 16 25 C -0.22 -4.86 9.17 -39.39 -0.36 -5.22 16 26 C -0.05 -1.01 9.69 -39.61 -0.38 -1.40 16 27 N -0.28 -3.34 12.79 32.42 0.41 -2.92 16 28 N -0.48 -3.70 7.45 32.62 0.24 -3.46 16 29 H 0.44 1.57 8.96 -182.33 -1.63 -0.06 16 30 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.08 0.02 8.14 -51.93 -0.42 -0.40 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.11 1.15 8.09 -51.93 -0.42 0.73 16 37 H 0.11 1.09 8.08 -51.93 -0.42 0.67 16 38 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 39 H 0.12 2.21 8.06 -52.49 -0.42 1.78 16 40 H 0.28 7.52 8.31 -40.82 -0.34 7.18 16 41 H 0.13 3.09 5.64 -52.48 -0.30 2.79 16 42 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 371.03 15.07 5.59 5.59 Total: -1.00 -35.72 371.03 -8.63 -44.35 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -6.37 Total: 1.69 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: -3.66 Total: -11.13 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 1.34 Total: -37.59 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -0.67 Total: -19.96 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.86 Total: 17.05 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.72 -8.63 -44.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840227372.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.179 kcal (2) G-P(sol) polarization free energy of solvation -35.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds