Wall clock time and date at job start Tue Mar 31 2020 16:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30831 * 125.95963 * 2 1 4 4 C 1.33248 * 109.82461 * 180.11876 * 3 2 1 5 5 C 1.50701 * 125.52307 * 179.85271 * 4 3 2 6 6 H 1.09001 * 109.47271 * 14.72605 * 5 4 3 7 7 C 1.52995 * 109.47411 * 254.71875 * 5 4 3 8 8 O 1.45206 * 109.47051 * 134.72016 * 5 4 3 9 9 C 1.34224 * 116.99931 * 210.00501 * 8 5 4 10 10 O 1.20826 * 120.00392 * 359.97438 * 9 8 5 11 11 C 1.50704 * 119.99730 * 180.02562 * 9 8 5 12 12 C 1.50701 * 109.46827 * 179.97438 * 11 9 8 13 13 C 1.38307 * 119.92751 * 269.72046 * 12 11 9 14 14 C 1.38105 * 120.06147 * 179.73104 * 13 12 11 15 15 C 1.38872 * 119.93430 * 0.56469 * 14 13 12 16 16 O 1.35750 * 120.06955 * 179.68276 * 15 14 13 17 17 C 1.34838 * 116.99807 * 174.49013 * 16 15 14 18 18 H 1.07994 * 119.99916 * 5.06161 * 17 16 15 19 19 C 1.38659 * 119.99657 * 185.05899 * 17 16 15 20 20 N 1.31558 * 119.99707 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99828 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47037 * 90.00289 * 21 19 17 23 23 H 1.48508 * 109.46833 * 209.99679 * 21 19 17 24 24 H 1.48498 * 109.47512 * 329.99801 * 21 19 17 25 25 C 1.38887 * 119.86270 * 359.71205 * 15 14 13 26 26 C 1.38093 * 119.92815 * 359.97438 * 25 15 14 27 27 N 1.30706 * 108.94831 * 359.59442 * 4 3 2 28 28 N 1.34431 * 125.95942 * 179.66695 * 2 1 3 29 29 H 0.97004 * 126.82749 * 0.02562 * 28 2 1 30 30 H 1.08993 * 109.47151 * 270.30323 * 1 2 3 31 31 H 1.09002 * 109.46962 * 30.30994 * 1 2 3 32 32 H 1.09005 * 109.46961 * 150.29816 * 1 2 3 33 33 H 1.09005 * 109.47044 * 60.00368 * 7 5 4 34 34 H 1.09005 * 109.47421 * 179.97438 * 7 5 4 35 35 H 1.09001 * 109.47499 * 300.00590 * 7 5 4 36 36 H 1.09004 * 109.47152 * 299.99393 * 11 9 8 37 37 H 1.08996 * 109.47344 * 59.99825 * 11 9 8 38 38 H 1.07994 * 119.96598 * 359.97438 * 13 12 11 39 39 H 1.07999 * 120.02925 * 180.28229 * 14 13 12 40 40 H 0.96992 * 119.99657 * 179.97438 * 20 19 17 41 41 H 1.08003 * 120.03351 * 179.97438 * 25 15 14 42 42 H 1.07999 * 119.96394 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5553 0.6887 -0.0026 5 6 4.7372 1.6236 -0.0066 6 1 4.4063 2.6288 0.2542 7 6 5.3698 1.6401 -1.3996 8 8 5.7168 1.1695 0.9644 9 6 6.4798 2.1087 1.5451 10 8 6.3344 3.2717 1.2516 11 6 7.5186 1.7125 2.5625 12 6 8.2324 2.9441 3.0572 13 6 9.3737 3.3858 2.4128 14 6 10.0269 4.5172 2.8604 15 6 9.5435 5.2049 3.9659 16 8 10.1871 6.3136 4.4121 17 6 9.6030 6.9979 5.4165 18 1 8.7087 6.6128 5.8836 19 6 10.1508 8.1958 5.8496 20 7 9.5812 8.8631 6.8299 21 14 11.6973 8.8620 5.0411 22 1 11.3225 9.7330 3.8983 23 1 12.4729 9.6513 6.0315 24 1 12.5260 7.7315 4.5509 25 6 8.4005 4.7554 4.6143 26 6 7.7481 3.6271 4.1580 27 7 3.6194 -0.6168 0.0045 28 7 2.2964 -1.0881 0.0063 29 1 2.0093 -2.0147 0.0114 30 1 -0.3633 0.0054 1.0276 31 1 -0.3633 0.8872 -0.5187 32 1 -0.3633 -0.8927 -0.5092 33 1 4.6345 1.9810 -2.1285 34 1 6.2245 2.3166 -1.4026 35 1 5.7007 0.6348 -1.6603 36 1 7.0339 1.2118 3.4007 37 1 8.2385 1.0360 2.1021 38 1 9.7521 2.8476 1.5564 39 1 10.9155 4.8643 2.3540 40 1 9.9645 9.7009 7.1331 41 1 8.0223 5.2878 5.4745 42 1 6.8590 3.2774 4.6615 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840227372.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:23 Heat of formation + Delta-G solvation = -25.043122 kcal Electronic energy + Delta-G solvation = -26600.812130 eV Core-core repulsion = 22547.895402 eV Total energy + Delta-G solvation = -4052.916728 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.33508 -41.70241 -40.81182 -38.70179 -37.66245 -34.82470 -34.52693 -33.48568 -33.19656 -32.03946 -31.82978 -28.92343 -28.70214 -26.98774 -25.74077 -23.75458 -23.37194 -22.23539 -21.59360 -21.21271 -19.83494 -19.19816 -19.07435 -18.62013 -17.64714 -17.36843 -16.82010 -16.55810 -16.31950 -15.76170 -15.66285 -15.43693 -15.27409 -15.13726 -14.65175 -14.36257 -14.27894 -14.14967 -14.05631 -13.74480 -13.67042 -13.26223 -13.05434 -12.94712 -12.83035 -12.56363 -12.51835 -12.41184 -12.37265 -11.98010 -11.93865 -11.55842 -11.29559 -11.26838 -11.22978 -10.90636 -10.63095 -9.81075 -9.04390 -8.50746 -6.23578 0.37725 0.53614 0.56975 1.19219 1.30909 1.33029 1.37940 1.51969 1.60507 1.85698 2.27872 2.72882 2.86593 3.04473 3.16484 3.44793 3.67810 3.72474 3.83127 3.98063 4.00312 4.10495 4.14483 4.40102 4.53900 4.56390 4.63325 4.65624 4.69440 4.73059 4.78407 4.93277 4.95532 5.04170 5.08553 5.18893 5.22395 5.32946 5.39909 5.54157 5.69448 5.78028 5.89588 6.12892 6.22123 6.73664 6.83219 6.93221 7.56870 8.60885 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.024491 B = 0.002018 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.982905 B =13872.845779 C =14295.245798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.293 3.707 3 N -0.571 5.571 4 C 0.215 3.785 5 C 0.178 3.822 6 H 0.096 0.904 7 C -0.152 4.152 8 O -0.347 6.347 9 C 0.464 3.536 10 O -0.527 6.527 11 C -0.048 4.048 12 C -0.150 4.150 13 C -0.052 4.052 14 C -0.192 4.192 15 C 0.123 3.877 16 O -0.243 6.243 17 C -0.400 4.400 18 H 0.080 0.920 19 C 0.008 3.992 20 N -0.923 5.923 21 Si 0.973 3.027 22 H -0.267 1.267 23 H -0.266 1.266 24 H -0.261 1.261 25 C -0.239 4.239 26 C -0.061 4.061 27 N -0.307 5.307 28 N -0.469 5.469 29 H 0.459 0.541 30 H 0.108 0.892 31 H 0.101 0.899 32 H 0.118 0.882 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.133 0.867 37 H 0.148 0.852 38 H 0.159 0.841 39 H 0.132 0.868 40 H 0.285 0.715 41 H 0.108 0.892 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.876 -25.062 -17.013 34.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.015 3.985 3 N -0.302 5.302 4 C -0.068 4.068 5 C 0.121 3.879 6 H 0.113 0.887 7 C -0.210 4.210 8 O -0.263 6.263 9 C 0.308 3.692 10 O -0.415 6.415 11 C -0.085 4.085 12 C -0.151 4.151 13 C -0.070 4.070 14 C -0.211 4.211 15 C 0.074 3.926 16 O -0.151 6.151 17 C -0.477 4.477 18 H 0.097 0.903 19 C -0.190 4.190 20 N -0.563 5.563 21 Si 0.795 3.205 22 H -0.192 1.192 23 H -0.190 1.190 24 H -0.185 1.185 25 C -0.258 4.258 26 C -0.079 4.079 27 N -0.138 5.138 28 N -0.190 5.190 29 H 0.309 0.691 30 H 0.127 0.873 31 H 0.119 0.881 32 H 0.137 0.863 33 H 0.106 0.894 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.151 0.849 37 H 0.166 0.834 38 H 0.176 0.824 39 H 0.150 0.850 40 H 0.095 0.905 41 H 0.126 0.874 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -15.158 -24.473 -17.040 33.452 hybrid contribution -0.145 0.500 0.415 0.665 sum -15.303 -23.973 -16.625 32.944 Atomic orbital electron populations 1.20701 0.79678 1.06885 1.06201 1.25281 0.98323 0.81663 0.93231 1.70312 1.01050 1.31802 1.27062 1.23618 0.92838 0.90262 1.00075 1.20537 0.82819 0.94693 0.89877 0.88656 1.22096 1.02025 1.04054 0.92834 1.86590 1.46369 1.40271 1.53070 1.24446 0.80875 0.83612 0.80316 1.90724 1.67558 1.21391 1.61807 1.20259 0.94891 0.96526 0.96810 1.19198 0.98153 0.99432 0.98292 1.20982 0.93807 0.93902 0.98294 1.20519 1.04198 0.98995 0.97409 1.19718 0.91897 0.87305 0.93703 1.83514 1.46716 1.35458 1.49407 1.20711 1.11610 1.04433 1.10903 0.90273 1.25324 1.02208 0.95002 0.96490 1.69732 1.42008 1.16670 1.27926 0.85188 0.78269 0.78660 0.78402 1.19232 1.19010 1.18535 1.21243 0.99380 1.01153 1.04043 1.20919 0.98035 0.93039 0.95877 1.77972 0.98530 1.11768 1.25522 1.48005 1.03115 1.11243 1.56666 0.69106 0.87336 0.88063 0.86330 0.89442 0.90695 0.90375 0.84872 0.83385 0.82372 0.85024 0.90542 0.87443 0.84931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.21 10.51 71.24 0.75 0.54 16 2 C 0.29 4.05 8.24 138.23 1.14 5.19 16 3 N -0.57 -13.00 11.19 -179.72 -2.01 -15.01 16 4 C 0.22 5.21 7.04 138.63 0.98 6.18 16 5 C 0.18 4.39 3.12 29.85 0.09 4.48 16 6 H 0.10 2.68 7.16 -2.39 -0.02 2.66 16 7 C -0.15 -2.98 9.53 71.98 0.69 -2.30 16 8 O -0.35 -8.65 9.86 -51.36 -0.51 -9.16 16 9 C 0.46 12.35 7.92 71.24 0.56 12.92 16 10 O -0.53 -18.26 15.25 21.97 0.34 -17.92 16 11 C -0.05 -1.01 5.94 29.10 0.17 -0.84 16 12 C -0.15 -4.57 4.38 -19.83 -0.09 -4.66 16 13 C -0.05 -1.62 9.69 22.25 0.22 -1.41 16 14 C -0.19 -7.55 9.99 22.39 0.22 -7.33 16 15 C 0.12 5.97 6.65 22.58 0.15 6.12 16 16 O -0.24 -13.66 8.59 -22.82 -0.20 -13.85 16 17 C -0.40 -24.33 9.95 67.92 0.68 -23.65 16 18 H 0.08 5.05 5.44 -2.91 -0.02 5.04 16 19 C 0.01 0.48 5.49 84.83 0.47 0.95 16 20 N -0.92 -56.35 13.96 21.61 0.30 -56.04 16 21 Si 0.97 46.53 28.62 68.60 1.96 48.49 16 22 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 23 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 24 H -0.26 -12.39 7.11 99.48 0.71 -11.69 16 25 C -0.24 -11.02 9.17 22.39 0.21 -10.81 16 26 C -0.06 -2.21 9.69 22.25 0.22 -1.99 16 27 N -0.31 -6.71 12.79 -51.33 -0.66 -7.36 16 28 N -0.47 -6.10 7.45 -50.71 -0.38 -6.47 16 29 H 0.46 1.97 8.96 -213.09 -1.91 0.05 16 30 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 31 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.12 -0.44 8.14 -2.38 -0.02 -0.46 16 33 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 34 H 0.07 1.50 8.14 -2.38 -0.02 1.49 16 35 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.13 2.22 8.09 -2.38 -0.02 2.20 16 37 H 0.15 2.06 8.08 -2.39 -0.02 2.04 16 38 H 0.16 3.54 8.06 -2.91 -0.02 3.52 16 39 H 0.13 4.73 8.06 -2.91 -0.02 4.71 16 40 H 0.28 15.92 8.31 -92.71 -0.77 15.15 16 41 H 0.11 5.44 5.64 -2.91 -0.02 5.42 16 42 H 0.13 4.10 8.06 -2.91 -0.02 4.07 16 Total: -1.00 -83.68 371.03 4.46 -79.22 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -0.83 Total: 14.74 kcal Atomic # 6 Polarization: -23.07 SS G_CDS: 6.44 Total: -16.62 kcal Atomic # 7 Polarization: -82.14 SS G_CDS: -2.74 Total: -84.89 kcal Atomic # 8 Polarization: -40.57 SS G_CDS: -0.37 Total: -40.94 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 1.96 Total: 48.49 kcal Total: -83.68 4.46 -79.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840227372.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.173 kcal (2) G-P(sol) polarization free energy of solvation -83.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds