Wall clock time and date at job start Tue Mar 31 2020 16:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30831 * 125.96292 * 2 1 4 4 C 1.33237 * 109.83035 * 179.97438 * 3 2 1 5 5 C 1.50696 * 125.53124 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.46772 * 14.99711 * 5 4 3 7 7 C 1.53004 * 109.47254 * 255.00082 * 5 4 3 8 8 O 1.45193 * 109.47678 * 134.99534 * 5 4 3 9 9 C 1.34230 * 117.00621 * 210.00559 * 8 5 4 10 10 O 1.20825 * 119.99618 * 359.97438 * 9 8 5 11 11 C 1.50697 * 120.00146 * 180.02562 * 9 8 5 12 12 C 1.50699 * 109.46970 * 179.97438 * 11 9 8 13 13 C 1.38328 * 119.96224 * 270.02075 * 12 11 9 14 14 C 1.38279 * 120.13490 * 179.97438 * 13 12 11 15 15 C 1.38120 * 120.07187 * 359.77180 * 14 13 12 16 16 C 1.38861 * 119.92847 * 0.50048 * 15 14 13 17 17 O 1.35751 * 120.06597 * 179.74703 * 16 15 14 18 18 C 1.34829 * 117.00376 * 354.17384 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38657 * 120.00083 * 185.03464 * 18 17 16 21 21 N 1.31555 * 119.99797 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99748 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47410 * 90.00109 * 22 20 18 24 24 H 1.48504 * 109.46801 * 209.99865 * 22 20 18 25 25 H 1.48497 * 109.47495 * 329.99577 * 22 20 18 26 26 C 1.38073 * 119.96952 * 89.99515 * 12 11 9 27 27 N 1.30718 * 108.94853 * 0.25702 * 4 3 2 28 28 N 1.34427 * 125.95972 * 179.97438 * 2 1 3 29 29 H 0.97010 * 126.82508 * 0.02562 * 28 2 1 30 30 H 1.08990 * 109.47211 * 90.00395 * 1 2 3 31 31 H 1.09002 * 109.47159 * 210.00438 * 1 2 3 32 32 H 1.09006 * 109.46775 * 330.00395 * 1 2 3 33 33 H 1.08994 * 109.46588 * 299.99474 * 7 5 4 34 34 H 1.09003 * 109.47214 * 59.99450 * 7 5 4 35 35 H 1.09000 * 109.46937 * 179.97438 * 7 5 4 36 36 H 1.08996 * 109.47386 * 59.99563 * 11 9 8 37 37 H 1.08997 * 109.47038 * 299.99398 * 11 9 8 38 38 H 1.08001 * 119.93314 * 359.97438 * 13 12 11 39 39 H 1.07999 * 119.96467 * 180.02562 * 14 13 12 40 40 H 1.08001 * 120.03711 * 180.27572 * 15 14 13 41 41 H 0.96998 * 119.99749 * 179.97438 * 21 20 18 42 42 H 1.08001 * 120.03594 * 0.04940 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2754 1.0589 0.0000 4 6 3.5553 0.6887 0.0006 5 6 4.7373 1.6235 0.0002 6 1 4.4064 2.6276 0.2654 7 6 5.3693 1.6460 -1.3931 8 8 5.7171 1.1652 0.9687 9 6 6.4805 2.1019 1.5533 10 8 6.3351 3.2661 1.2648 11 6 7.5197 1.7012 2.5685 12 6 8.2338 2.9306 3.0683 13 6 9.3715 3.3793 2.4220 14 6 10.0293 4.5072 2.8772 15 6 9.5492 5.1921 3.9763 16 6 8.4106 4.7409 4.6307 17 8 7.9392 5.4090 5.7144 18 6 8.6880 6.4302 6.1774 19 1 9.5745 6.7360 5.6417 20 6 8.3198 7.0878 7.3413 21 7 9.0507 8.0839 7.7932 22 14 6.7869 6.5583 8.2682 23 1 7.1457 5.5174 9.2646 24 1 6.2009 7.7307 8.9663 25 1 5.7954 6.0060 7.3106 26 6 7.7516 3.6082 4.1704 27 7 3.6195 -0.6169 -0.0046 28 7 2.2964 -1.0881 0.0005 29 1 2.0093 -2.0147 0.0006 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8901 0.5138 33 1 5.7001 0.6419 -1.6581 34 1 4.6337 1.9901 -2.1202 35 1 6.2240 2.3225 -1.3934 36 1 8.2394 1.0266 2.1049 37 1 7.0353 1.1970 3.4046 38 1 9.7468 2.8476 1.5601 39 1 10.9171 4.8553 2.3703 40 1 10.0609 6.0755 4.3287 41 1 8.7930 8.5441 8.6072 42 1 6.8635 3.2572 4.6749 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840388727.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:30 Heat of formation + Delta-G solvation = -1.451576 kcal Electronic energy + Delta-G solvation = -26794.190730 eV Core-core repulsion = 22742.297008 eV Total energy + Delta-G solvation = -4051.893722 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.59894 -40.57106 -39.12798 -37.19350 -36.33514 -34.01983 -32.81626 -32.48225 -32.23874 -31.27097 -29.46632 -28.40238 -27.46657 -25.23054 -24.88518 -22.51333 -21.74752 -21.32232 -20.53406 -20.12913 -18.40760 -17.72893 -17.58741 -17.15810 -16.54365 -16.37796 -15.89736 -15.20899 -14.82134 -14.66499 -14.49585 -14.12705 -13.75089 -13.67571 -13.65899 -13.36889 -13.29842 -13.12201 -12.60420 -12.49360 -12.39297 -12.24097 -12.16547 -11.79823 -11.54753 -11.31237 -10.96330 -10.86591 -10.80616 -10.71484 -10.51219 -10.46092 -10.34321 -10.13794 -9.90162 -9.37475 -8.84737 -8.18355 -7.35829 -6.38448 -4.05140 1.12547 1.84205 2.16435 2.23692 2.30366 2.34265 2.77674 3.24799 3.27966 3.43933 3.57486 4.09910 4.26957 4.32129 4.47555 4.68410 4.70372 4.77661 4.85189 4.91926 5.05240 5.07837 5.13648 5.25492 5.30943 5.44970 5.52557 5.57237 5.68850 5.73081 5.82575 5.83919 5.95665 6.11797 6.25077 6.37206 6.53226 6.60237 6.78512 7.08337 7.19788 7.31821 7.60344 7.65004 7.82674 7.83357 8.06526 8.96979 9.59491 10.69272 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.014527 B = 0.002458 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.022539 B =11386.450385 C =12804.020969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.284 3.716 3 N -0.530 5.530 4 C 0.230 3.770 5 C 0.182 3.818 6 H 0.115 0.885 7 C -0.161 4.161 8 O -0.350 6.350 9 C 0.462 3.538 10 O -0.484 6.484 11 C -0.062 4.062 12 C -0.046 4.046 13 C -0.185 4.185 14 C -0.076 4.076 15 C -0.214 4.214 16 C 0.160 3.840 17 O -0.218 6.218 18 C -0.389 4.389 19 H 0.107 0.893 20 C 0.063 3.937 21 N -0.880 5.880 22 Si 0.905 3.095 23 H -0.274 1.274 24 H -0.282 1.282 25 H -0.259 1.259 26 C -0.172 4.172 27 N -0.284 5.284 28 N -0.483 5.483 29 H 0.441 0.559 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.107 0.893 39 H 0.112 0.888 40 H 0.134 0.866 41 H 0.279 0.721 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.487 -19.969 -17.234 29.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.006 3.994 3 N -0.260 5.260 4 C -0.053 4.053 5 C 0.124 3.876 6 H 0.133 0.867 7 C -0.219 4.219 8 O -0.267 6.267 9 C 0.303 3.697 10 O -0.369 6.369 11 C -0.100 4.100 12 C -0.047 4.047 13 C -0.204 4.204 14 C -0.094 4.094 15 C -0.233 4.233 16 C 0.108 3.892 17 O -0.123 6.123 18 C -0.464 4.464 19 H 0.124 0.876 20 C -0.140 4.140 21 N -0.518 5.518 22 Si 0.730 3.270 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.183 1.183 26 C -0.191 4.191 27 N -0.113 5.113 28 N -0.202 5.202 29 H 0.287 0.713 30 H 0.112 0.888 31 H 0.103 0.897 32 H 0.119 0.881 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.125 0.875 39 H 0.130 0.870 40 H 0.151 0.849 41 H 0.089 0.911 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -13.139 -19.456 -17.021 28.998 hybrid contribution -0.933 -0.588 0.422 1.180 sum -14.071 -20.044 -16.599 29.585 Atomic orbital electron populations 1.20429 0.83265 1.05313 1.04717 1.24443 0.96735 0.82593 0.95630 1.70321 1.00819 1.29701 1.25127 1.23671 0.92592 0.89963 0.99044 1.20478 0.82498 0.95405 0.89186 0.86698 1.22154 1.02092 1.03767 0.93857 1.86595 1.46433 1.40605 1.53019 1.23904 0.81007 0.84217 0.80527 1.90727 1.66248 1.19569 1.60347 1.20256 0.95007 0.98096 0.96620 1.18654 0.95499 0.95074 0.95429 1.20446 0.98220 0.99856 1.01886 1.20746 0.98502 0.94581 0.95571 1.21327 0.99500 1.03438 0.99004 1.18993 0.91920 0.90575 0.87730 1.83570 1.46369 1.42925 1.39452 1.20765 1.08830 1.07892 1.08933 0.87614 1.24456 0.98638 0.95102 0.95798 1.69646 1.38369 1.20967 1.22853 0.86190 0.82651 0.78227 0.79910 1.19900 1.20792 1.18344 1.19966 1.02428 0.96698 1.00014 1.78105 0.96224 1.12113 1.24875 1.48088 1.04379 1.10188 1.57506 0.71269 0.88803 0.89671 0.88087 0.91036 0.90356 0.90335 0.86910 0.87052 0.87461 0.87000 0.84876 0.91089 0.86649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.25 10.51 36.01 0.38 0.13 16 2 C 0.28 2.34 8.24 -155.70 -1.28 1.06 16 3 N -0.53 -6.41 11.19 -8.16 -0.09 -6.50 16 4 C 0.23 2.95 7.03 -156.86 -1.10 1.85 16 5 C 0.18 2.34 3.11 -27.88 -0.09 2.25 16 6 H 0.12 1.61 7.16 -51.93 -0.37 1.24 16 7 C -0.16 -1.67 9.53 37.16 0.35 -1.31 16 8 O -0.35 -4.80 9.86 -39.26 -0.39 -5.19 16 9 C 0.46 6.90 7.92 36.00 0.29 7.18 16 10 O -0.48 -8.82 15.25 -18.75 -0.29 -9.11 16 11 C -0.06 -0.82 5.94 -29.04 -0.17 -1.00 16 12 C -0.05 -0.80 4.37 -104.65 -0.46 -1.26 16 13 C -0.19 -3.17 9.70 -39.53 -0.38 -3.55 16 14 C -0.08 -1.41 10.04 -39.61 -0.40 -1.80 16 15 C -0.21 -4.73 9.17 -39.39 -0.36 -5.09 16 16 C 0.16 3.80 6.65 -39.11 -0.26 3.54 16 17 O -0.22 -5.90 8.59 0.05 0.00 -5.90 16 18 C -0.39 -11.15 9.95 30.89 0.31 -10.84 16 19 H 0.11 3.08 5.44 -52.49 -0.29 2.80 16 20 C 0.06 1.80 5.49 -17.52 -0.10 1.70 16 21 N -0.88 -25.75 13.96 55.48 0.77 -24.97 16 22 Si 0.90 22.08 28.62 -169.99 -4.86 17.22 16 23 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.26 -6.40 7.11 56.52 0.40 -6.00 16 26 C -0.17 -3.53 9.65 -39.40 -0.38 -3.91 16 27 N -0.28 -3.39 12.80 32.42 0.41 -2.98 16 28 N -0.48 -3.81 7.45 32.62 0.24 -3.57 16 29 H 0.44 1.67 8.96 -182.32 -1.63 0.04 16 30 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.08 0.07 8.14 -51.93 -0.42 -0.36 16 32 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.11 1.15 8.08 -51.93 -0.42 0.73 16 37 H 0.11 1.28 8.08 -51.93 -0.42 0.86 16 38 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 39 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 40 H 0.13 3.07 5.64 -52.49 -0.30 2.77 16 41 H 0.28 7.54 8.31 -40.82 -0.34 7.20 16 42 H 0.12 2.23 8.06 -52.49 -0.42 1.81 16 LS Contribution 371.04 15.07 5.59 5.59 Total: -1.00 -36.00 371.04 -8.63 -44.62 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -6.37 Total: 1.82 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -3.66 Total: -11.05 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 1.34 Total: -38.02 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.67 Total: -20.19 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.86 Total: 17.22 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.00 -8.63 -44.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840388727.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.173 kcal (2) G-P(sol) polarization free energy of solvation -35.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds