Wall clock time and date at job start Tue Mar 31 2020 16:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30831 * 125.96292 * 2 1 4 4 C 1.33237 * 109.83035 * 179.97438 * 3 2 1 5 5 C 1.50696 * 125.53124 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.46772 * 14.99711 * 5 4 3 7 7 C 1.53004 * 109.47254 * 255.00082 * 5 4 3 8 8 O 1.45193 * 109.47678 * 134.99534 * 5 4 3 9 9 C 1.34230 * 117.00621 * 210.00559 * 8 5 4 10 10 O 1.20825 * 119.99618 * 359.97438 * 9 8 5 11 11 C 1.50697 * 120.00146 * 180.02562 * 9 8 5 12 12 C 1.50699 * 109.46970 * 179.97438 * 11 9 8 13 13 C 1.38328 * 119.96224 * 270.02075 * 12 11 9 14 14 C 1.38279 * 120.13490 * 179.97438 * 13 12 11 15 15 C 1.38120 * 120.07187 * 359.77180 * 14 13 12 16 16 C 1.38861 * 119.92847 * 0.50048 * 15 14 13 17 17 O 1.35751 * 120.06597 * 179.74703 * 16 15 14 18 18 C 1.34829 * 117.00376 * 354.17384 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38657 * 120.00083 * 185.03464 * 18 17 16 21 21 N 1.31555 * 119.99797 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99748 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47410 * 90.00109 * 22 20 18 24 24 H 1.48504 * 109.46801 * 209.99865 * 22 20 18 25 25 H 1.48497 * 109.47495 * 329.99577 * 22 20 18 26 26 C 1.38073 * 119.96952 * 89.99515 * 12 11 9 27 27 N 1.30718 * 108.94853 * 0.25702 * 4 3 2 28 28 N 1.34427 * 125.95972 * 179.97438 * 2 1 3 29 29 H 0.97010 * 126.82508 * 0.02562 * 28 2 1 30 30 H 1.08990 * 109.47211 * 90.00395 * 1 2 3 31 31 H 1.09002 * 109.47159 * 210.00438 * 1 2 3 32 32 H 1.09006 * 109.46775 * 330.00395 * 1 2 3 33 33 H 1.08994 * 109.46588 * 299.99474 * 7 5 4 34 34 H 1.09003 * 109.47214 * 59.99450 * 7 5 4 35 35 H 1.09000 * 109.46937 * 179.97438 * 7 5 4 36 36 H 1.08996 * 109.47386 * 59.99563 * 11 9 8 37 37 H 1.08997 * 109.47038 * 299.99398 * 11 9 8 38 38 H 1.08001 * 119.93314 * 359.97438 * 13 12 11 39 39 H 1.07999 * 119.96467 * 180.02562 * 14 13 12 40 40 H 1.08001 * 120.03711 * 180.27572 * 15 14 13 41 41 H 0.96998 * 119.99749 * 179.97438 * 21 20 18 42 42 H 1.08001 * 120.03594 * 0.04940 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2754 1.0589 0.0000 4 6 3.5553 0.6887 0.0006 5 6 4.7373 1.6235 0.0002 6 1 4.4064 2.6276 0.2654 7 6 5.3693 1.6460 -1.3931 8 8 5.7171 1.1652 0.9687 9 6 6.4805 2.1019 1.5533 10 8 6.3351 3.2661 1.2648 11 6 7.5197 1.7012 2.5685 12 6 8.2338 2.9306 3.0683 13 6 9.3715 3.3793 2.4220 14 6 10.0293 4.5072 2.8772 15 6 9.5492 5.1921 3.9763 16 6 8.4106 4.7409 4.6307 17 8 7.9392 5.4090 5.7144 18 6 8.6880 6.4302 6.1774 19 1 9.5745 6.7360 5.6417 20 6 8.3198 7.0878 7.3413 21 7 9.0507 8.0839 7.7932 22 14 6.7869 6.5583 8.2682 23 1 7.1457 5.5174 9.2646 24 1 6.2009 7.7307 8.9663 25 1 5.7954 6.0060 7.3106 26 6 7.7516 3.6082 4.1704 27 7 3.6195 -0.6169 -0.0046 28 7 2.2964 -1.0881 0.0005 29 1 2.0093 -2.0147 0.0006 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8901 0.5138 33 1 5.7001 0.6419 -1.6581 34 1 4.6337 1.9901 -2.1202 35 1 6.2240 2.3225 -1.3934 36 1 8.2394 1.0266 2.1049 37 1 7.0353 1.1970 3.4046 38 1 9.7468 2.8476 1.5601 39 1 10.9171 4.8553 2.3703 40 1 10.0609 6.0755 4.3287 41 1 8.7930 8.5441 8.6072 42 1 6.8635 3.2572 4.6749 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840388727.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:29 Heat of formation + Delta-G solvation = -24.547244 kcal Electronic energy + Delta-G solvation = -26795.192234 eV Core-core repulsion = 22742.297008 eV Total energy + Delta-G solvation = -4052.895225 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.34257 -41.75084 -40.81469 -38.68366 -37.70429 -34.84393 -34.48610 -33.66205 -33.49166 -32.11368 -31.11729 -28.93062 -28.84679 -27.21411 -25.83525 -23.74299 -23.18592 -22.31645 -21.70294 -21.26427 -19.67588 -19.20646 -18.88256 -18.63401 -17.61893 -17.39903 -16.86916 -16.80184 -16.45344 -15.85698 -15.68823 -15.43471 -15.30273 -15.08570 -14.63955 -14.39053 -14.27912 -14.15458 -13.93364 -13.75684 -13.67291 -13.25966 -13.06329 -12.97898 -12.83756 -12.56414 -12.52565 -12.43692 -12.38540 -12.00490 -11.94661 -11.61298 -11.32891 -11.27053 -11.24151 -10.91537 -10.63565 -9.74106 -9.09451 -8.50582 -6.23186 0.31853 0.45201 0.67522 1.14524 1.29524 1.31253 1.35492 1.50689 1.59661 1.84087 2.27393 2.72779 2.85526 3.01739 3.13041 3.43694 3.61869 3.70975 3.79665 3.95312 4.05181 4.08556 4.25220 4.37899 4.50051 4.55800 4.59866 4.63059 4.68541 4.69063 4.71917 4.92077 4.93425 5.03682 5.07426 5.18200 5.19699 5.34230 5.38321 5.60993 5.69294 5.75195 5.90188 6.12154 6.22243 6.68395 6.83761 6.92441 7.58299 8.61120 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.014527 B = 0.002458 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.022539 B =11386.450385 C =12804.020969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.293 3.707 3 N -0.570 5.570 4 C 0.215 3.785 5 C 0.178 3.822 6 H 0.096 0.904 7 C -0.151 4.151 8 O -0.345 6.345 9 C 0.468 3.532 10 O -0.525 6.525 11 C -0.059 4.059 12 C -0.039 4.039 13 C -0.164 4.164 14 C -0.076 4.076 15 C -0.234 4.234 16 C 0.118 3.882 17 O -0.247 6.247 18 C -0.399 4.399 19 H 0.082 0.918 20 C 0.010 3.990 21 N -0.922 5.922 22 Si 0.970 3.030 23 H -0.262 1.262 24 H -0.266 1.266 25 H -0.268 1.268 26 C -0.179 4.179 27 N -0.307 5.307 28 N -0.469 5.469 29 H 0.459 0.541 30 H 0.114 0.886 31 H 0.116 0.884 32 H 0.097 0.903 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.157 0.843 37 H 0.134 0.866 38 H 0.154 0.846 39 H 0.144 0.856 40 H 0.109 0.891 41 H 0.285 0.715 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.957 -23.602 -19.089 33.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.015 3.985 3 N -0.302 5.302 4 C -0.068 4.068 5 C 0.121 3.879 6 H 0.113 0.887 7 C -0.209 4.209 8 O -0.261 6.261 9 C 0.311 3.689 10 O -0.413 6.413 11 C -0.096 4.096 12 C -0.039 4.039 13 C -0.182 4.182 14 C -0.094 4.094 15 C -0.253 4.253 16 C 0.069 3.931 17 O -0.155 6.155 18 C -0.476 4.476 19 H 0.099 0.901 20 C -0.188 4.188 21 N -0.563 5.563 22 Si 0.792 3.208 23 H -0.187 1.187 24 H -0.191 1.191 25 H -0.192 1.192 26 C -0.198 4.198 27 N -0.138 5.138 28 N -0.190 5.190 29 H 0.309 0.691 30 H 0.132 0.868 31 H 0.134 0.866 32 H 0.116 0.884 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.094 0.906 36 H 0.175 0.825 37 H 0.152 0.848 38 H 0.171 0.829 39 H 0.162 0.838 40 H 0.127 0.873 41 H 0.094 0.906 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -14.613 -23.162 -18.911 33.281 hybrid contribution -0.482 0.296 0.689 0.892 sum -15.095 -22.866 -18.222 32.905 Atomic orbital electron populations 1.20699 0.79687 1.06677 1.06395 1.25278 0.98322 0.81662 0.93236 1.70306 1.01045 1.31806 1.27036 1.23613 0.92847 0.90279 1.00105 1.20562 0.82770 0.94660 0.89955 0.88653 1.22097 1.02062 1.04120 0.92660 1.86576 1.46332 1.40104 1.53134 1.24149 0.80870 0.83663 0.80184 1.90730 1.67547 1.21166 1.61830 1.20384 0.95407 0.96555 0.97216 1.19108 0.95387 0.95734 0.93713 1.21056 0.96884 0.98430 1.01873 1.21136 0.99471 0.94618 0.94177 1.21370 0.99641 1.03582 1.00741 1.19564 0.93583 0.92115 0.87800 1.83510 1.46990 1.43480 1.41490 1.20719 1.08636 1.08888 1.09315 0.90071 1.25265 1.01745 0.95205 0.96615 1.69726 1.40309 1.22413 1.23887 0.85235 0.78636 0.78459 0.78477 1.18718 1.19066 1.19230 1.20279 1.02479 0.95911 1.01107 1.77974 0.98518 1.11738 1.25528 1.48004 1.03120 1.11239 1.56664 0.69103 0.86779 0.86568 0.88394 0.90322 0.89378 0.90570 0.82540 0.84817 0.82867 0.83799 0.87282 0.90558 0.86014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.26 10.51 71.24 0.75 0.49 16 2 C 0.29 4.23 8.24 138.23 1.14 5.36 16 3 N -0.57 -13.33 11.19 -179.73 -2.01 -15.34 16 4 C 0.21 5.31 7.03 138.63 0.98 6.29 16 5 C 0.18 4.46 3.11 29.85 0.09 4.55 16 6 H 0.10 2.73 7.16 -2.39 -0.02 2.71 16 7 C -0.15 -2.96 9.53 71.98 0.69 -2.27 16 8 O -0.35 -8.83 9.86 -51.42 -0.51 -9.34 16 9 C 0.47 12.89 7.92 71.24 0.56 13.45 16 10 O -0.52 -18.58 15.25 21.97 0.34 -18.24 16 11 C -0.06 -1.32 5.94 29.10 0.17 -1.15 16 12 C -0.04 -1.25 4.37 -19.88 -0.09 -1.34 16 13 C -0.16 -5.00 9.70 22.30 0.22 -4.78 16 14 C -0.08 -2.70 10.04 22.25 0.22 -2.47 16 15 C -0.23 -10.72 9.17 22.39 0.21 -10.52 16 16 C 0.12 5.82 6.65 22.58 0.15 5.97 16 17 O -0.25 -14.03 8.59 -22.74 -0.20 -14.23 16 18 C -0.40 -24.33 9.95 67.92 0.68 -23.65 16 19 H 0.08 5.16 5.44 -2.91 -0.02 5.14 16 20 C 0.01 0.59 5.49 84.83 0.47 1.06 16 21 N -0.92 -56.30 13.96 21.61 0.30 -55.99 16 22 Si 0.97 46.92 28.62 68.60 1.96 48.88 16 23 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 24 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 25 H -0.27 -13.15 7.11 99.48 0.71 -12.44 16 26 C -0.18 -7.26 9.65 22.39 0.22 -7.05 16 27 N -0.31 -6.85 12.80 -51.34 -0.66 -7.51 16 28 N -0.47 -6.36 7.45 -50.70 -0.38 -6.73 16 29 H 0.46 2.21 8.96 -213.08 -1.91 0.30 16 30 H 0.11 0.00 8.14 -2.39 -0.02 -0.02 16 31 H 0.12 -0.30 8.14 -2.39 -0.02 -0.32 16 32 H 0.10 0.48 8.14 -2.38 -0.02 0.46 16 33 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.16 2.23 8.08 -2.39 -0.02 2.21 16 37 H 0.13 2.51 8.08 -2.39 -0.02 2.49 16 38 H 0.15 3.37 8.06 -2.91 -0.02 3.34 16 39 H 0.14 4.12 8.06 -2.91 -0.02 4.10 16 40 H 0.11 5.45 5.64 -2.91 -0.02 5.43 16 41 H 0.28 15.91 8.31 -92.71 -0.77 15.14 16 42 H 0.12 4.68 8.06 -2.91 -0.02 4.66 16 Total: -1.00 -84.08 371.04 4.46 -79.62 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -0.83 Total: 14.95 kcal Atomic # 6 Polarization: -22.50 SS G_CDS: 6.44 Total: -16.06 kcal Atomic # 7 Polarization: -82.84 SS G_CDS: -2.74 Total: -85.58 kcal Atomic # 8 Polarization: -41.45 SS G_CDS: -0.37 Total: -41.81 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 1.96 Total: 48.88 kcal Total: -84.08 4.46 -79.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840388727.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.069 kcal (2) G-P(sol) polarization free energy of solvation -84.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds