Wall clock time and date at job start Tue Mar 31 2020 16:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53000 * 109.46984 * 2 1 4 4 C 1.52996 * 109.46919 * 240.00058 * 2 1 3 5 5 N 1.46503 * 109.47183 * 120.00003 * 2 1 3 6 6 C 1.34599 * 125.74619 * 74.99904 * 5 2 1 7 7 N 1.30853 * 107.63551 * 179.71075 * 6 5 2 8 8 C 1.34582 * 107.27164 * 0.42332 * 7 6 5 9 9 C 1.47737 * 126.05787 * 179.83454 * 8 7 6 10 10 O 1.21476 * 120.00334 * 179.68751 * 9 8 7 11 11 O 1.34737 * 119.99421 * 359.69212 * 9 8 7 12 12 C 1.35907 * 116.99469 * 175.01173 * 11 9 8 13 13 C 1.38846 * 120.02155 * 255.30735 * 12 11 9 14 14 C 1.38183 * 120.07745 * 179.97438 * 13 12 11 15 15 C 1.38157 * 120.12732 * 359.77458 * 14 13 12 16 16 C 1.38890 * 120.04105 * 0.50097 * 15 14 13 17 17 O 1.35752 * 120.03997 * 179.74370 * 16 15 14 18 18 C 1.34831 * 117.00205 * 174.13630 * 17 16 15 19 19 H 1.07997 * 119.99857 * 5.06121 * 18 17 16 20 20 C 1.38651 * 120.00063 * 185.06470 * 18 17 16 21 21 N 1.31553 * 119.99912 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00029 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46888 * 59.99952 * 22 20 18 24 24 H 1.48496 * 109.47284 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47142 * 300.00193 * 22 20 18 26 26 C 1.38581 * 120.02130 * 75.29010 * 12 11 9 27 27 N 1.28849 * 125.74035 * 254.97436 * 5 2 1 28 28 H 1.08995 * 109.46638 * 299.99937 * 1 2 3 29 29 H 1.08996 * 109.46912 * 60.00234 * 1 2 3 30 30 H 1.08998 * 109.46861 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46819 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.47305 * 299.99723 * 3 2 1 33 33 H 1.09003 * 109.47503 * 59.99848 * 3 2 1 34 34 H 1.08998 * 109.47094 * 299.99540 * 4 2 1 35 35 H 1.08996 * 109.47567 * 60.00109 * 4 2 1 36 36 H 1.09006 * 109.46868 * 180.02562 * 4 2 1 37 37 H 1.07997 * 126.18254 * 359.97438 * 6 5 2 38 38 H 1.08000 * 119.95560 * 359.97438 * 13 12 11 39 39 H 1.08002 * 119.93624 * 180.02562 * 14 13 12 40 40 H 1.07999 * 119.97434 * 180.25309 * 15 14 13 41 41 H 0.97001 * 119.99951 * 180.02562 * 21 20 18 42 42 H 1.07986 * 120.06590 * 0.04123 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0184 -0.6906 1.1962 6 6 2.0140 -2.0222 1.3922 7 7 2.5335 -2.2511 2.5712 8 6 2.8503 -1.0578 3.1068 9 6 3.4610 -0.8346 4.4333 10 8 3.7069 0.2950 4.8065 11 8 3.7453 -1.8840 5.2292 12 6 4.4002 -1.6183 6.3900 13 6 5.7512 -1.9156 6.5091 14 6 6.4184 -1.6455 7.6887 15 6 5.7448 -1.0746 8.7513 16 6 4.3921 -0.7803 8.6397 17 8 3.7291 -0.2241 9.6856 18 6 2.4509 0.1480 9.4720 19 1 1.9739 -0.0751 8.5291 20 6 1.7488 0.8172 10.4628 21 7 2.3297 1.0887 11.6115 22 14 -0.0219 1.3335 10.1666 23 1 -0.8485 0.1310 9.8910 24 1 -0.5433 2.0277 11.3713 25 1 -0.0813 2.2526 9.0016 26 6 3.7202 -1.0500 7.4554 27 7 2.5250 -0.1255 2.2375 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6768 1.9564 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6767 -1.7489 -1.2492 35 1 1.6767 -0.2074 -2.1392 36 1 3.1301 -0.7216 -1.2490 37 1 1.6514 -2.7674 0.6997 38 1 6.2812 -2.3586 5.6789 39 1 7.4694 -1.8774 7.7787 40 1 6.2697 -0.8607 9.6706 41 1 1.8384 1.5565 12.3048 42 1 2.6693 -0.8184 7.3648 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841343973.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:32 Heat of formation + Delta-G solvation = 24.772336 kcal Electronic energy + Delta-G solvation = -27458.672960 eV Core-core repulsion = 23407.916392 eV Total energy + Delta-G solvation = -4050.756568 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.78071 -40.73463 -38.73708 -37.80232 -36.91708 -35.67755 -32.92553 -32.26485 -31.38685 -29.70336 -28.88607 -28.14802 -28.02113 -25.83873 -25.21943 -23.31868 -22.45677 -21.60801 -20.54931 -20.41173 -18.26319 -18.13698 -17.61108 -16.90734 -16.76857 -16.10278 -15.76791 -15.16162 -15.08185 -14.71417 -14.59336 -14.30182 -14.04240 -13.78366 -13.46246 -13.32592 -13.06668 -13.00129 -12.89701 -12.61112 -12.42476 -12.33861 -11.94950 -11.83501 -11.57012 -11.51254 -11.28193 -11.03809 -10.85201 -10.64654 -10.59320 -10.57768 -10.47554 -10.27061 -9.80318 -9.49484 -8.82933 -8.14448 -7.31662 -6.44034 -4.03098 1.11041 1.54805 1.82958 1.96181 2.25560 2.87616 3.14902 3.15850 3.18406 3.20355 3.75509 3.98257 4.00336 4.03967 4.14529 4.40669 4.49485 4.77561 4.80033 4.92343 4.98666 5.04991 5.10111 5.11224 5.21133 5.24107 5.32899 5.51818 5.62817 5.66876 5.74470 5.83127 6.02410 6.07725 6.18399 6.22336 6.32772 6.58936 6.86060 7.01987 7.12026 7.17168 7.36637 7.57341 7.79188 7.99802 8.17256 9.01247 9.67063 10.73435 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.012430 B = 0.003080 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.160757 B = 9089.970888 C =10774.098538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.166 3.834 3 C -0.151 4.151 4 C -0.160 4.160 5 N -0.290 5.290 6 C 0.188 3.812 7 N -0.460 5.460 8 C 0.163 3.837 9 C 0.558 3.442 10 O -0.458 6.458 11 O -0.271 6.271 12 C 0.118 3.882 13 C -0.206 4.206 14 C -0.066 4.066 15 C -0.183 4.183 16 C 0.163 3.837 17 O -0.170 6.170 18 C -0.392 4.392 19 H 0.091 0.909 20 C 0.042 3.958 21 N -0.861 5.861 22 Si 0.939 3.061 23 H -0.269 1.269 24 H -0.276 1.276 25 H -0.269 1.269 26 C -0.226 4.226 27 N -0.235 5.235 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.225 0.775 38 H 0.116 0.884 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.271 0.729 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.583 -4.176 -27.213 27.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.084 3.916 3 C -0.209 4.209 4 C -0.218 4.218 5 N -0.088 5.088 6 C -0.108 4.108 7 N -0.185 5.185 8 C -0.114 4.114 9 C 0.398 3.602 10 O -0.338 6.338 11 O -0.184 6.184 12 C 0.077 3.923 13 C -0.225 4.225 14 C -0.084 4.084 15 C -0.202 4.202 16 C 0.109 3.891 17 O -0.073 6.073 18 C -0.468 4.468 19 H 0.108 0.892 20 C -0.162 4.162 21 N -0.495 5.495 22 Si 0.764 3.236 23 H -0.194 1.194 24 H -0.201 1.201 25 H -0.194 1.194 26 C -0.246 4.246 27 N -0.076 5.076 28 H 0.089 0.911 29 H 0.106 0.894 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.108 0.892 36 H 0.090 0.910 37 H 0.242 0.758 38 H 0.134 0.866 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.081 0.919 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.338 -3.266 -26.263 26.568 hybrid contribution -1.158 0.075 -0.469 1.252 sum -3.496 -3.191 -26.732 27.148 Atomic orbital electron populations 1.22283 0.91515 1.03784 1.04340 1.21233 0.95476 0.94436 0.80430 1.22027 1.02683 0.92144 1.04004 1.22268 1.02786 1.01197 0.95567 1.47885 1.41162 1.06447 1.13291 1.26455 1.01661 0.86327 0.96332 1.71431 1.15112 1.25442 1.06509 1.22200 1.07246 0.86158 0.95815 1.19059 0.76087 0.83228 0.81854 1.90962 1.47378 1.23332 1.72102 1.84609 1.68508 1.35490 1.29805 1.18243 0.90713 1.00734 0.82618 1.20535 0.92044 1.10123 0.99819 1.20487 0.98699 0.97239 0.91983 1.20345 0.92200 1.07263 1.00430 1.19103 0.91403 0.91768 0.86872 1.83996 1.26147 1.66624 1.30512 1.21281 0.85231 1.37654 1.02669 0.89203 1.25265 1.00240 0.96008 0.94712 1.70024 1.37347 1.37686 1.04465 0.85802 0.80390 0.79190 0.78257 1.19404 1.20125 1.19389 1.21235 1.01622 1.07499 0.94234 1.74321 1.13071 1.24838 0.95376 0.91055 0.89445 0.91207 0.91155 0.90165 0.90349 0.91014 0.89194 0.91041 0.75843 0.86559 0.85863 0.85781 0.91889 0.84946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.72 8.72 37.16 0.32 -0.40 16 2 C 0.17 0.99 1.23 -131.82 -0.16 0.83 16 3 C -0.15 -0.98 8.04 37.16 0.30 -0.68 16 4 C -0.16 -0.49 8.28 37.16 0.31 -0.18 16 5 N -0.29 -2.96 3.17 -49.83 -0.16 -3.12 16 6 C 0.19 1.83 11.71 -90.48 -1.06 0.77 16 7 N -0.46 -6.77 11.42 -12.39 -0.14 -6.92 16 8 C 0.16 2.78 7.99 -156.34 -1.25 1.53 16 9 C 0.56 11.33 7.83 34.61 0.27 11.60 16 10 O -0.46 -10.51 16.56 -19.25 -0.32 -10.83 16 11 O -0.27 -5.62 10.04 -24.81 -0.25 -5.87 16 12 C 0.12 2.58 5.19 -39.23 -0.20 2.38 16 13 C -0.21 -4.00 9.99 -39.38 -0.39 -4.40 16 14 C -0.07 -1.22 10.03 -39.63 -0.40 -1.62 16 15 C -0.18 -3.98 9.99 -39.37 -0.39 -4.37 16 16 C 0.16 4.16 6.65 -39.13 -0.26 3.90 16 17 O -0.17 -5.01 9.76 0.04 0.00 -5.01 16 18 C -0.39 -11.49 9.49 30.88 0.29 -11.19 16 19 H 0.09 2.51 5.20 -52.49 -0.27 2.23 16 20 C 0.04 1.21 5.49 -17.52 -0.10 1.11 16 21 N -0.86 -25.75 13.67 55.48 0.76 -25.00 16 22 Si 0.94 21.45 29.55 -169.99 -5.02 16.43 16 23 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 24 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 26 C -0.23 -5.53 8.59 -39.24 -0.34 -5.87 16 27 N -0.23 -3.50 11.09 32.06 0.36 -3.15 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 0.68 8.02 -51.93 -0.42 0.26 16 34 H 0.07 0.12 7.34 -51.93 -0.38 -0.26 16 35 H 0.09 0.11 8.14 -51.93 -0.42 -0.32 16 36 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.23 0.97 7.53 -52.49 -0.40 0.57 16 38 H 0.12 1.95 8.06 -52.49 -0.42 1.52 16 39 H 0.12 1.80 8.06 -52.49 -0.42 1.37 16 40 H 0.12 2.51 8.06 -52.49 -0.42 2.09 16 41 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.13 3.35 5.64 -52.49 -0.30 3.05 16 LS Contribution 369.01 15.07 5.56 5.56 Total: -1.00 -36.82 369.01 -7.40 -44.21 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -5.12 Total: 0.28 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: -3.06 Total: -6.60 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 0.81 Total: -38.17 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -0.57 Total: -21.70 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.82 -7.40 -44.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841343973.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.984 kcal (2) G-P(sol) polarization free energy of solvation -36.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds