Wall clock time and date at job start Tue Mar 31 2020 16:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53000 * 109.46984 * 2 1 4 4 C 1.52996 * 109.46919 * 240.00058 * 2 1 3 5 5 N 1.46503 * 109.47183 * 120.00003 * 2 1 3 6 6 C 1.34599 * 125.74619 * 74.99904 * 5 2 1 7 7 N 1.30853 * 107.63551 * 179.71075 * 6 5 2 8 8 C 1.34582 * 107.27164 * 0.42332 * 7 6 5 9 9 C 1.47737 * 126.05787 * 179.83454 * 8 7 6 10 10 O 1.21476 * 120.00334 * 179.68751 * 9 8 7 11 11 O 1.34737 * 119.99421 * 359.69212 * 9 8 7 12 12 C 1.35907 * 116.99469 * 175.01173 * 11 9 8 13 13 C 1.38846 * 120.02155 * 255.30735 * 12 11 9 14 14 C 1.38183 * 120.07745 * 179.97438 * 13 12 11 15 15 C 1.38157 * 120.12732 * 359.77458 * 14 13 12 16 16 C 1.38890 * 120.04105 * 0.50097 * 15 14 13 17 17 O 1.35752 * 120.03997 * 179.74370 * 16 15 14 18 18 C 1.34831 * 117.00205 * 174.13630 * 17 16 15 19 19 H 1.07997 * 119.99857 * 5.06121 * 18 17 16 20 20 C 1.38651 * 120.00063 * 185.06470 * 18 17 16 21 21 N 1.31553 * 119.99912 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00029 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46888 * 59.99952 * 22 20 18 24 24 H 1.48496 * 109.47284 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47142 * 300.00193 * 22 20 18 26 26 C 1.38581 * 120.02130 * 75.29010 * 12 11 9 27 27 N 1.28849 * 125.74035 * 254.97436 * 5 2 1 28 28 H 1.08995 * 109.46638 * 299.99937 * 1 2 3 29 29 H 1.08996 * 109.46912 * 60.00234 * 1 2 3 30 30 H 1.08998 * 109.46861 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46819 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.47305 * 299.99723 * 3 2 1 33 33 H 1.09003 * 109.47503 * 59.99848 * 3 2 1 34 34 H 1.08998 * 109.47094 * 299.99540 * 4 2 1 35 35 H 1.08996 * 109.47567 * 60.00109 * 4 2 1 36 36 H 1.09006 * 109.46868 * 180.02562 * 4 2 1 37 37 H 1.07997 * 126.18254 * 359.97438 * 6 5 2 38 38 H 1.08000 * 119.95560 * 359.97438 * 13 12 11 39 39 H 1.08002 * 119.93624 * 180.02562 * 14 13 12 40 40 H 1.07999 * 119.97434 * 180.25309 * 15 14 13 41 41 H 0.97001 * 119.99951 * 180.02562 * 21 20 18 42 42 H 1.07986 * 120.06590 * 0.04123 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0184 -0.6906 1.1962 6 6 2.0140 -2.0222 1.3922 7 7 2.5335 -2.2511 2.5712 8 6 2.8503 -1.0578 3.1068 9 6 3.4610 -0.8346 4.4333 10 8 3.7069 0.2950 4.8065 11 8 3.7453 -1.8840 5.2292 12 6 4.4002 -1.6183 6.3900 13 6 5.7512 -1.9156 6.5091 14 6 6.4184 -1.6455 7.6887 15 6 5.7448 -1.0746 8.7513 16 6 4.3921 -0.7803 8.6397 17 8 3.7291 -0.2241 9.6856 18 6 2.4509 0.1480 9.4720 19 1 1.9739 -0.0751 8.5291 20 6 1.7488 0.8172 10.4628 21 7 2.3297 1.0887 11.6115 22 14 -0.0219 1.3335 10.1666 23 1 -0.8485 0.1310 9.8910 24 1 -0.5433 2.0277 11.3713 25 1 -0.0813 2.2526 9.0016 26 6 3.7202 -1.0500 7.4554 27 7 2.5250 -0.1255 2.2375 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6768 1.9564 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6767 -1.7489 -1.2492 35 1 1.6767 -0.2074 -2.1392 36 1 3.1301 -0.7216 -1.2490 37 1 1.6514 -2.7674 0.6997 38 1 6.2812 -2.3586 5.6789 39 1 7.4694 -1.8774 7.7787 40 1 6.2697 -0.8607 9.6706 41 1 1.8384 1.5565 12.3048 42 1 2.6693 -0.8184 7.3648 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841343973.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:31 Heat of formation + Delta-G solvation = 1.720808 kcal Electronic energy + Delta-G solvation = -27459.672549 eV Core-core repulsion = 23407.916392 eV Total energy + Delta-G solvation = -4051.756157 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.75422 -42.39127 -40.59953 -38.79999 -38.27473 -37.44950 -34.37763 -33.85779 -32.42700 -31.39420 -30.68876 -28.54917 -28.41140 -27.59909 -26.85414 -24.17592 -23.98124 -23.37095 -22.04252 -21.24129 -20.15440 -19.65982 -19.11606 -18.03936 -17.96681 -17.48958 -17.23050 -16.91029 -16.29035 -16.01605 -15.97103 -15.66652 -15.22404 -15.07762 -14.99785 -14.71644 -14.49905 -13.85812 -13.77604 -13.35304 -13.27203 -13.25388 -13.15583 -13.07808 -12.82312 -12.77438 -12.61547 -12.44064 -12.26324 -12.21663 -12.03280 -12.01112 -11.61721 -11.58403 -11.54810 -10.89036 -10.76717 -9.88154 -9.20763 -8.55869 -6.25091 -0.17648 -0.00120 0.50291 0.85265 0.91243 1.26895 1.37512 1.43154 1.59694 1.80437 2.10672 2.65718 2.89977 3.02561 3.18929 3.36012 3.62235 3.64557 3.74660 3.75301 3.94709 4.13280 4.26860 4.36897 4.47663 4.55247 4.58226 4.61412 4.68291 4.75694 4.78756 4.81444 4.88852 4.98173 5.08034 5.10418 5.17127 5.21593 5.29422 5.34979 5.43475 5.49209 5.56693 5.89963 5.91005 6.44058 6.84503 6.87700 7.61776 8.66142 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.012430 B = 0.003080 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.160757 B = 9089.970888 C =10774.098538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.155 3.845 3 C -0.153 4.153 4 C -0.155 4.155 5 N -0.278 5.278 6 C 0.210 3.790 7 N -0.491 5.491 8 C 0.129 3.871 9 C 0.559 3.441 10 O -0.499 6.499 11 O -0.271 6.271 12 C 0.105 3.895 13 C -0.184 4.184 14 C -0.045 4.045 15 C -0.185 4.185 16 C 0.128 3.872 17 O -0.217 6.217 18 C -0.420 4.420 19 H 0.087 0.913 20 C -0.013 4.013 21 N -0.910 5.910 22 Si 1.011 2.989 23 H -0.257 1.257 24 H -0.259 1.259 25 H -0.266 1.266 26 C -0.245 4.245 27 N -0.251 5.251 28 H 0.043 0.957 29 H 0.117 0.883 30 H 0.085 0.915 31 H 0.054 0.946 32 H 0.113 0.887 33 H 0.048 0.952 34 H 0.094 0.906 35 H 0.117 0.883 36 H 0.060 0.940 37 H 0.283 0.717 38 H 0.156 0.844 39 H 0.182 0.818 40 H 0.137 0.863 41 H 0.277 0.723 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.673 -5.785 -31.460 32.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.075 3.925 3 C -0.210 4.210 4 C -0.213 4.213 5 N -0.076 5.076 6 C -0.084 4.084 7 N -0.216 5.216 8 C -0.146 4.146 9 C 0.401 3.599 10 O -0.382 6.382 11 O -0.184 6.184 12 C 0.064 3.936 13 C -0.203 4.203 14 C -0.063 4.063 15 C -0.204 4.204 16 C 0.077 3.923 17 O -0.123 6.123 18 C -0.496 4.496 19 H 0.105 0.895 20 C -0.212 4.212 21 N -0.547 5.547 22 Si 0.830 3.170 23 H -0.181 1.181 24 H -0.182 1.182 25 H -0.190 1.190 26 C -0.265 4.265 27 N -0.095 5.095 28 H 0.062 0.938 29 H 0.135 0.865 30 H 0.104 0.896 31 H 0.073 0.927 32 H 0.132 0.868 33 H 0.067 0.933 34 H 0.113 0.887 35 H 0.135 0.865 36 H 0.079 0.921 37 H 0.298 0.702 38 H 0.174 0.826 39 H 0.199 0.801 40 H 0.155 0.845 41 H 0.086 0.914 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.404 -4.915 -30.562 31.048 hybrid contribution -0.964 0.461 0.484 1.173 sum -3.368 -4.454 -30.078 30.592 Atomic orbital electron populations 1.22325 0.89904 1.04913 1.04467 1.21821 0.96626 0.94098 0.79922 1.22064 1.01688 0.93054 1.04205 1.22328 1.02142 1.02473 0.94370 1.48409 1.39270 1.07076 1.12874 1.27455 0.98872 0.86851 0.95263 1.71343 1.16706 1.24905 1.08694 1.21670 1.10001 0.87752 0.95182 1.19583 0.75175 0.82449 0.82680 1.90924 1.49429 1.24564 1.73266 1.84616 1.68647 1.35793 1.29323 1.18498 0.91934 1.00676 0.82514 1.21126 0.90708 1.07297 1.01187 1.21105 1.00980 0.94267 0.89908 1.20764 0.90725 1.06752 1.02191 1.19685 0.93055 0.92710 0.86873 1.83952 1.26520 1.69262 1.32523 1.21622 0.85966 1.38877 1.03158 0.89544 1.26480 1.05036 0.95501 0.94137 1.70136 1.39566 1.39400 1.05620 0.84773 0.74332 0.79173 0.78714 1.18121 1.18232 1.19050 1.21179 1.00883 1.09104 0.95288 1.74254 1.13322 1.25526 0.96410 0.93786 0.86467 0.89582 0.92727 0.86827 0.93286 0.88715 0.86496 0.92128 0.70181 0.82592 0.80118 0.84497 0.91402 0.87410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.91 8.72 71.99 0.63 -0.28 16 2 C 0.15 1.42 1.23 3.60 0.00 1.43 16 3 C -0.15 -1.81 8.04 71.98 0.58 -1.23 16 4 C -0.16 -0.25 8.28 71.98 0.60 0.34 16 5 N -0.28 -5.20 3.17 -311.58 -0.99 -6.19 16 6 C 0.21 3.48 11.71 180.30 2.11 5.59 16 7 N -0.49 -13.96 11.42 -193.10 -2.21 -16.16 16 8 C 0.13 4.48 7.99 137.06 1.10 5.58 16 9 C 0.56 23.70 7.83 70.33 0.55 24.25 16 10 O -0.50 -24.31 16.56 19.91 0.33 -23.98 16 11 O -0.27 -11.52 10.04 0.00 0.00 -11.52 16 12 C 0.10 4.67 5.19 22.50 0.12 4.79 16 13 C -0.18 -6.72 9.99 22.40 0.22 -6.50 16 14 C -0.04 -1.53 10.03 22.24 0.22 -1.31 16 15 C -0.19 -8.02 9.99 22.41 0.22 -7.80 16 16 C 0.13 6.88 6.65 22.56 0.15 7.03 16 17 O -0.22 -13.69 9.76 -22.77 -0.22 -13.91 16 18 C -0.42 -26.40 9.49 67.92 0.64 -25.76 16 19 H 0.09 5.27 5.20 -2.91 -0.02 5.25 16 20 C -0.01 -0.76 5.49 84.83 0.47 -0.29 16 21 N -0.91 -57.25 13.67 21.61 0.30 -56.95 16 22 Si 1.01 45.82 29.55 68.60 2.03 47.85 16 23 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 24 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 25 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 26 C -0.24 -12.69 8.59 22.49 0.19 -12.50 16 27 N -0.25 -7.59 11.09 -52.49 -0.58 -8.17 16 28 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.12 0.01 8.14 -2.39 -0.02 -0.01 16 30 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 31 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.11 0.54 8.14 -2.38 -0.02 0.52 16 33 H 0.05 0.87 8.02 -2.39 -0.02 0.85 16 34 H 0.09 -0.24 7.34 -2.39 -0.02 -0.26 16 35 H 0.12 -0.36 8.14 -2.39 -0.02 -0.38 16 36 H 0.06 0.28 8.14 -2.38 -0.02 0.26 16 37 H 0.28 0.87 7.53 -2.91 -0.02 0.85 16 38 H 0.16 4.52 8.06 -2.91 -0.02 4.50 16 39 H 0.18 4.18 8.06 -2.91 -0.02 4.15 16 40 H 0.14 5.50 8.06 -2.91 -0.02 5.48 16 41 H 0.28 15.84 8.31 -92.71 -0.77 15.07 16 42 H 0.11 5.99 5.64 -2.92 -0.02 5.98 16 Total: -1.00 -90.90 369.01 7.52 -83.39 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: 1.05 Total: 12.33 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: 7.81 Total: -6.67 kcal Atomic # 7 Polarization: -84.00 SS G_CDS: -3.48 Total: -87.48 kcal Atomic # 8 Polarization: -49.52 SS G_CDS: 0.11 Total: -49.41 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -90.90 7.52 -83.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841343973.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.106 kcal (2) G-P(sol) polarization free energy of solvation -90.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds