Wall clock time and date at job start Tue Mar 31 2020 16:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29961 * 125.30614 * 2 1 4 4 O 1.41875 * 107.41259 * 179.97438 * 3 2 1 5 5 N 1.41874 * 106.38990 * 359.78286 * 4 3 2 6 6 C 1.29956 * 107.41640 * 0.36430 * 5 4 3 7 7 C 1.50694 * 125.30566 * 179.89424 * 6 5 4 8 8 C 1.50706 * 109.46930 * 269.69652 * 7 6 5 9 9 O 1.21286 * 120.00189 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99707 * 180.02562 * 8 7 6 11 11 C 1.39920 * 120.00098 * 185.27535 * 10 8 7 12 12 C 1.38928 * 120.04597 * 213.33972 * 11 10 8 13 13 C 1.38119 * 120.04676 * 179.97438 * 12 11 10 14 14 C 1.38219 * 120.11867 * 359.76550 * 13 12 11 15 15 C 1.38762 * 120.08674 * 0.50355 * 14 13 12 16 16 O 1.35900 * 120.02324 * 179.74201 * 15 14 13 17 17 C 1.42900 * 116.99907 * 359.73362 * 16 15 14 18 18 C 1.52994 * 109.47358 * 179.97438 * 17 16 15 19 19 C 1.50698 * 109.47426 * 180.02562 * 18 17 16 20 20 H 1.07997 * 119.99558 * 359.97438 * 19 18 17 21 21 C 1.37875 * 119.99968 * 180.02562 * 19 18 17 22 22 N 1.31516 * 120.00364 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00024 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.47107 * 59.99267 * 23 21 19 25 25 H 1.48498 * 109.47421 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.46883 * 299.99585 * 23 21 19 27 27 C 1.38624 * 119.95660 * 359.47794 * 15 14 13 28 28 H 1.08999 * 109.47539 * 270.00170 * 1 2 3 29 29 H 1.09005 * 109.47016 * 30.00228 * 1 2 3 30 30 H 1.09002 * 109.47094 * 150.00176 * 1 2 3 31 31 H 1.08996 * 109.47372 * 149.69576 * 7 6 5 32 32 H 1.09006 * 109.47093 * 29.69224 * 7 6 5 33 33 H 0.97008 * 120.00627 * 5.27212 * 10 8 7 34 34 H 1.08007 * 119.98149 * 359.96966 * 12 11 10 35 35 H 1.07994 * 119.94249 * 180.02562 * 13 12 11 36 36 H 1.07999 * 119.95938 * 180.27956 * 14 13 12 37 37 H 1.08999 * 109.46968 * 300.00116 * 17 16 15 38 38 H 1.09002 * 109.46796 * 59.99560 * 17 16 15 39 39 H 1.08998 * 109.46923 * 300.00404 * 18 17 16 40 40 H 1.09003 * 109.46870 * 59.99870 * 18 17 16 41 41 H 0.96996 * 120.00325 * 180.02562 * 22 21 19 42 42 H 1.08001 * 120.06373 * 180.24714 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2581 1.0606 0.0000 4 8 3.6082 0.6247 0.0006 5 7 3.5710 -0.7936 0.0061 6 6 2.3212 -1.1499 0.0006 7 6 1.8209 -2.5713 0.0013 8 6 1.6542 -3.0459 -1.4194 9 8 1.9155 -2.3027 -2.3416 10 7 1.2137 -4.2957 -1.6650 11 6 1.1637 -4.7742 -2.9789 12 6 0.1634 -5.6604 -3.3588 13 6 0.1137 -6.1324 -4.6559 14 6 1.0554 -5.7210 -5.5802 15 6 2.0601 -4.8404 -5.2050 16 8 2.9884 -4.4409 -6.1136 17 6 2.8729 -4.9716 -7.4353 18 6 3.9965 -4.4117 -8.3097 19 6 3.8744 -4.9709 -9.7038 20 1 3.0755 -5.6573 -9.9421 21 6 4.7832 -4.6069 -10.6746 22 7 5.7564 -3.7713 -10.3843 23 14 4.6322 -5.3006 -12.4025 24 1 3.3186 -4.9147 -12.9778 25 1 5.7228 -4.7570 -13.2512 26 1 4.7348 -6.7812 -12.3521 27 6 2.1129 -4.3643 -3.9042 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 0.8608 -2.6184 0.5151 32 1 2.5398 -3.2094 0.5154 33 1 0.9314 -4.8636 -0.9310 34 1 -0.5759 -5.9805 -2.6394 35 1 -0.6648 -6.8208 -4.9495 36 1 1.0114 -6.0882 -6.5949 37 1 2.9481 -6.0584 -7.3983 38 1 1.9088 -4.6883 -7.8576 39 1 3.9209 -3.3249 -8.3466 40 1 4.9608 -4.6946 -7.8875 41 1 6.3955 -3.5149 -11.0674 42 1 2.8918 -3.6757 -3.6113 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845238135.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:59 Heat of formation + Delta-G solvation = 39.428158 kcal Electronic energy + Delta-G solvation = -26639.374099 eV Core-core repulsion = 22589.253055 eV Total energy + Delta-G solvation = -4050.121044 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.94197 -40.76117 -39.37189 -37.32283 -34.98546 -34.79918 -33.81169 -33.35237 -31.00648 -30.62485 -29.35560 -29.17181 -28.68084 -25.08277 -23.81042 -22.77064 -22.20377 -21.54593 -20.76519 -20.29211 -18.55568 -17.76375 -17.28828 -16.46868 -16.29968 -16.20253 -15.91165 -15.57170 -15.31967 -15.19360 -14.74737 -14.65948 -14.48601 -14.20805 -13.87199 -13.56841 -13.42898 -13.15393 -12.93999 -12.71277 -12.31231 -12.10860 -12.05041 -11.86680 -11.75644 -11.49673 -11.30385 -10.98354 -10.92329 -10.88222 -10.59321 -10.49586 -10.13001 -9.84922 -9.65101 -9.30222 -8.44763 -8.36271 -7.89810 -6.08405 -4.13622 0.18751 1.20377 1.50664 1.55943 2.16773 2.22864 2.59414 2.78162 3.29510 3.33845 3.35567 3.39644 3.75059 3.88808 3.98950 4.24987 4.29517 4.42742 4.54441 4.70435 4.82595 4.87227 4.92028 5.08874 5.18116 5.27610 5.29464 5.35294 5.37651 5.58797 5.74979 5.99715 6.03140 6.14398 6.25447 6.45283 6.54966 6.55706 6.71050 6.87409 6.97825 7.51483 7.65425 7.65783 7.81225 8.05681 8.24767 8.91813 9.50542 11.03135 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.013612 B = 0.002288 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.534790 B =12233.132737 C =13800.841381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.085 3.915 3 N -0.275 5.275 4 O 0.033 5.967 5 N -0.256 5.256 6 C 0.090 3.910 7 C -0.077 4.077 8 C 0.513 3.487 9 O -0.497 6.497 10 N -0.666 5.666 11 C 0.174 3.826 12 C -0.193 4.193 13 C -0.061 4.061 14 C -0.223 4.223 15 C 0.165 3.835 16 O -0.312 6.312 17 C 0.065 3.935 18 C 0.025 3.975 19 C -0.528 4.528 20 H 0.058 0.942 21 C 0.061 3.939 22 N -0.889 5.889 23 Si 0.899 3.101 24 H -0.275 1.275 25 H -0.286 1.286 26 H -0.275 1.275 27 C -0.163 4.163 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.132 0.868 32 H 0.131 0.869 33 H 0.413 0.587 34 H 0.123 0.877 35 H 0.126 0.874 36 H 0.133 0.867 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.028 0.972 40 H 0.028 0.972 41 H 0.264 0.736 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.291 -1.680 26.927 31.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.097 4.097 3 N -0.020 5.020 4 O -0.109 6.109 5 N 0.002 4.998 6 C -0.094 4.094 7 C -0.118 4.118 8 C 0.297 3.703 9 O -0.369 6.369 10 N -0.312 5.312 11 C 0.081 3.919 12 C -0.214 4.214 13 C -0.080 4.080 14 C -0.242 4.242 15 C 0.117 3.883 16 O -0.224 6.224 17 C -0.009 4.009 18 C -0.012 4.012 19 C -0.566 4.566 20 H 0.076 0.924 21 C -0.142 4.142 22 N -0.527 5.527 23 Si 0.727 3.273 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.201 1.201 27 C -0.184 4.184 28 H 0.116 0.884 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.150 0.850 32 H 0.148 0.852 33 H 0.249 0.751 34 H 0.141 0.859 35 H 0.144 0.856 36 H 0.151 0.849 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.074 0.926 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -14.522 -0.018 26.238 29.989 hybrid contribution -0.810 -1.208 -0.791 1.656 sum -15.331 -1.226 25.448 29.735 Atomic orbital electron populations 1.20584 0.84210 1.05712 1.04604 1.24504 1.00306 0.88767 0.96156 1.79941 0.89061 1.19536 1.13504 1.93421 1.20147 1.13000 1.84382 1.79932 1.17240 0.91696 1.10904 1.23686 0.90213 0.97475 0.98008 1.20301 1.05464 0.89664 0.96371 1.20246 0.77628 0.81743 0.90642 1.90888 1.46665 1.53852 1.45535 1.43288 1.65541 1.14675 1.07707 1.17213 0.94568 0.96409 0.83723 1.20594 0.99434 1.03941 0.97412 1.20677 0.97419 0.97788 0.92094 1.21421 0.98110 1.03159 1.01550 1.18959 0.88316 0.91408 0.89600 1.86208 1.47989 1.66537 1.21713 1.23368 1.02137 0.97608 0.77788 1.19127 0.92252 0.97494 0.92364 1.20919 1.13205 1.28182 0.94263 0.92395 1.24996 0.95061 0.94982 0.99156 1.69968 1.15297 1.33153 1.34268 0.86542 0.77785 0.79299 0.83704 1.20088 1.21110 1.20089 1.20264 1.01341 1.05430 0.91322 0.88410 0.88851 0.88957 0.84976 0.85151 0.75102 0.85945 0.85572 0.84944 0.92986 0.93006 0.95353 0.95378 0.92612 0.84359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.39 10.05 36.00 0.36 -0.03 16 2 C 0.09 0.76 7.19 -82.38 -0.59 0.17 16 3 N -0.28 -3.35 12.98 33.74 0.44 -2.91 16 4 O 0.03 0.46 13.71 12.03 0.16 0.63 16 5 N -0.26 -3.25 12.98 33.74 0.44 -2.81 16 6 C 0.09 0.83 5.68 -82.38 -0.47 0.36 16 7 C -0.08 -0.36 5.87 -29.04 -0.17 -0.53 16 8 C 0.51 4.68 7.56 -10.98 -0.08 4.60 16 9 O -0.50 -7.41 13.72 5.55 0.08 -7.33 16 10 N -0.67 -5.05 5.34 -9.88 -0.05 -5.10 16 11 C 0.17 2.07 6.28 -83.72 -0.53 1.55 16 12 C -0.19 -1.98 9.96 -39.37 -0.39 -2.37 16 13 C -0.06 -0.71 10.03 -39.63 -0.40 -1.11 16 14 C -0.22 -3.36 9.04 -39.39 -0.36 -3.72 16 15 C 0.17 2.96 6.68 -39.25 -0.26 2.70 16 16 O -0.31 -6.73 10.13 -19.43 -0.20 -6.93 16 17 C 0.06 1.42 4.68 37.15 0.17 1.59 16 18 C 0.02 0.67 5.34 -27.89 -0.15 0.52 16 19 C -0.53 -14.89 9.11 -34.44 -0.31 -15.21 16 20 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 21 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 22 N -0.89 -26.96 13.29 55.43 0.74 -26.22 16 23 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 C -0.16 -2.65 8.59 -39.25 -0.34 -2.98 16 28 H 0.10 0.14 8.14 -51.93 -0.42 -0.28 16 29 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.27 7.78 -51.93 -0.40 -0.13 16 31 H 0.13 -0.01 7.77 -51.93 -0.40 -0.42 16 32 H 0.13 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.41 1.18 8.82 -40.82 -0.36 0.82 16 34 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 35 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 36 H 0.13 1.96 6.29 -52.49 -0.33 1.63 16 37 H 0.05 1.06 7.67 -51.93 -0.40 0.66 16 38 H 0.05 1.07 7.65 -51.93 -0.40 0.68 16 39 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 42 H 0.14 2.51 6.42 -52.49 -0.34 2.17 16 LS Contribution 369.80 15.07 5.57 5.57 Total: -1.00 -38.07 369.80 -6.58 -44.66 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: -5.13 Total: -3.19 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: -3.61 Total: -12.83 kcal Atomic # 7 Polarization: -38.60 SS G_CDS: 1.56 Total: -37.04 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: 0.04 Total: -13.63 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -38.07 -6.58 -44.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845238135.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.084 kcal (2) G-P(sol) polarization free energy of solvation -38.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds