Wall clock time and date at job start Tue Mar 31 2020 16:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29961 * 125.30614 * 2 1 4 4 O 1.41875 * 107.41259 * 179.97438 * 3 2 1 5 5 N 1.41874 * 106.38990 * 359.78286 * 4 3 2 6 6 C 1.29956 * 107.41640 * 0.36430 * 5 4 3 7 7 C 1.50694 * 125.30566 * 179.89424 * 6 5 4 8 8 C 1.50706 * 109.46930 * 269.69652 * 7 6 5 9 9 O 1.21286 * 120.00189 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99707 * 180.02562 * 8 7 6 11 11 C 1.39920 * 120.00098 * 185.27535 * 10 8 7 12 12 C 1.38928 * 120.04597 * 213.33972 * 11 10 8 13 13 C 1.38119 * 120.04676 * 179.97438 * 12 11 10 14 14 C 1.38219 * 120.11867 * 359.76550 * 13 12 11 15 15 C 1.38762 * 120.08674 * 0.50355 * 14 13 12 16 16 O 1.35900 * 120.02324 * 179.74201 * 15 14 13 17 17 C 1.42900 * 116.99907 * 359.73362 * 16 15 14 18 18 C 1.52994 * 109.47358 * 179.97438 * 17 16 15 19 19 C 1.50698 * 109.47426 * 180.02562 * 18 17 16 20 20 H 1.07997 * 119.99558 * 359.97438 * 19 18 17 21 21 C 1.37875 * 119.99968 * 180.02562 * 19 18 17 22 22 N 1.31516 * 120.00364 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00024 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.47107 * 59.99267 * 23 21 19 25 25 H 1.48498 * 109.47421 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.46883 * 299.99585 * 23 21 19 27 27 C 1.38624 * 119.95660 * 359.47794 * 15 14 13 28 28 H 1.08999 * 109.47539 * 270.00170 * 1 2 3 29 29 H 1.09005 * 109.47016 * 30.00228 * 1 2 3 30 30 H 1.09002 * 109.47094 * 150.00176 * 1 2 3 31 31 H 1.08996 * 109.47372 * 149.69576 * 7 6 5 32 32 H 1.09006 * 109.47093 * 29.69224 * 7 6 5 33 33 H 0.97008 * 120.00627 * 5.27212 * 10 8 7 34 34 H 1.08007 * 119.98149 * 359.96966 * 12 11 10 35 35 H 1.07994 * 119.94249 * 180.02562 * 13 12 11 36 36 H 1.07999 * 119.95938 * 180.27956 * 14 13 12 37 37 H 1.08999 * 109.46968 * 300.00116 * 17 16 15 38 38 H 1.09002 * 109.46796 * 59.99560 * 17 16 15 39 39 H 1.08998 * 109.46923 * 300.00404 * 18 17 16 40 40 H 1.09003 * 109.46870 * 59.99870 * 18 17 16 41 41 H 0.96996 * 120.00325 * 180.02562 * 22 21 19 42 42 H 1.08001 * 120.06373 * 180.24714 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2581 1.0606 0.0000 4 8 3.6082 0.6247 0.0006 5 7 3.5710 -0.7936 0.0061 6 6 2.3212 -1.1499 0.0006 7 6 1.8209 -2.5713 0.0013 8 6 1.6542 -3.0459 -1.4194 9 8 1.9155 -2.3027 -2.3416 10 7 1.2137 -4.2957 -1.6650 11 6 1.1637 -4.7742 -2.9789 12 6 0.1634 -5.6604 -3.3588 13 6 0.1137 -6.1324 -4.6559 14 6 1.0554 -5.7210 -5.5802 15 6 2.0601 -4.8404 -5.2050 16 8 2.9884 -4.4409 -6.1136 17 6 2.8729 -4.9716 -7.4353 18 6 3.9965 -4.4117 -8.3097 19 6 3.8744 -4.9709 -9.7038 20 1 3.0755 -5.6573 -9.9421 21 6 4.7832 -4.6069 -10.6746 22 7 5.7564 -3.7713 -10.3843 23 14 4.6322 -5.3006 -12.4025 24 1 3.3186 -4.9147 -12.9778 25 1 5.7228 -4.7570 -13.2512 26 1 4.7348 -6.7812 -12.3521 27 6 2.1129 -4.3643 -3.9042 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 0.8608 -2.6184 0.5151 32 1 2.5398 -3.2094 0.5154 33 1 0.9314 -4.8636 -0.9310 34 1 -0.5759 -5.9805 -2.6394 35 1 -0.6648 -6.8208 -4.9495 36 1 1.0114 -6.0882 -6.5949 37 1 2.9481 -6.0584 -7.3983 38 1 1.9088 -4.6883 -7.8576 39 1 3.9209 -3.3249 -8.3466 40 1 4.9608 -4.6946 -7.8875 41 1 6.3955 -3.5149 -11.0674 42 1 2.8918 -3.6757 -3.6113 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845238135.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:58 Heat of formation + Delta-G solvation = 10.379614 kcal Electronic energy + Delta-G solvation = -26640.633739 eV Core-core repulsion = 22589.253055 eV Total energy + Delta-G solvation = -4051.380683 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.69404 -41.67019 -40.57800 -38.52275 -35.83280 -35.69368 -35.38651 -34.53057 -32.62343 -31.62522 -30.71465 -29.80257 -29.45004 -27.03347 -24.80078 -23.67441 -23.58160 -22.64017 -21.82718 -21.24460 -19.73748 -18.62611 -18.35904 -17.97778 -17.27550 -17.05393 -17.01029 -16.86261 -16.74769 -16.58204 -16.06981 -15.49857 -15.34351 -14.99373 -14.52061 -14.46859 -14.36192 -14.29415 -14.24048 -13.92276 -13.39746 -13.35137 -13.14224 -12.90615 -12.72783 -12.64770 -12.63101 -12.60414 -12.29100 -12.13368 -11.81530 -11.69783 -11.62787 -11.47045 -11.29042 -11.01668 -10.64606 -9.43825 -9.01675 -8.28850 -6.43953 -0.59295 0.20867 0.49483 0.83178 1.38836 1.41755 1.43608 1.43965 1.52032 1.88376 2.05602 2.28700 2.51717 2.75352 2.83737 3.05221 3.37891 3.68654 3.90151 3.91223 4.12286 4.16573 4.19755 4.23346 4.27695 4.35400 4.44156 4.46459 4.58948 4.64484 4.68750 4.70770 4.75633 5.09015 5.24618 5.26289 5.30467 5.40925 5.41876 5.53294 5.65255 5.78259 5.90905 6.03710 6.33296 6.55023 6.71136 7.04780 7.26680 8.84510 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.013612 B = 0.002288 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.534790 B =12233.132737 C =13800.841381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.098 3.902 3 N -0.312 5.312 4 O -0.023 6.023 5 N -0.295 5.295 6 C 0.101 3.899 7 C -0.067 4.067 8 C 0.512 3.488 9 O -0.563 6.563 10 N -0.643 5.643 11 C 0.181 3.819 12 C -0.165 4.165 13 C -0.054 4.054 14 C -0.235 4.235 15 C 0.119 3.881 16 O -0.350 6.350 17 C 0.086 3.914 18 C 0.027 3.973 19 C -0.546 4.546 20 H 0.075 0.925 21 C -0.002 4.002 22 N -0.935 5.935 23 Si 0.981 3.019 24 H -0.262 1.262 25 H -0.284 1.284 26 H -0.260 1.260 27 C -0.189 4.189 28 H 0.138 0.862 29 H 0.088 0.912 30 H 0.115 0.885 31 H 0.199 0.801 32 H 0.160 0.840 33 H 0.441 0.559 34 H 0.179 0.821 35 H 0.167 0.833 36 H 0.129 0.871 37 H 0.066 0.934 38 H 0.061 0.939 39 H -0.008 1.008 40 H -0.005 1.005 41 H 0.267 0.733 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.040 -5.105 28.833 36.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.085 4.085 3 N -0.062 5.062 4 O -0.155 6.155 5 N -0.041 5.041 6 C -0.084 4.084 7 C -0.107 4.107 8 C 0.300 3.700 9 O -0.440 6.440 10 N -0.292 5.292 11 C 0.087 3.913 12 C -0.185 4.185 13 C -0.072 4.072 14 C -0.254 4.254 15 C 0.073 3.927 16 O -0.265 6.265 17 C 0.012 3.988 18 C -0.011 4.011 19 C -0.583 4.583 20 H 0.093 0.907 21 C -0.200 4.200 22 N -0.574 5.574 23 Si 0.803 3.197 24 H -0.186 1.186 25 H -0.209 1.209 26 H -0.185 1.185 27 C -0.210 4.210 28 H 0.156 0.844 29 H 0.107 0.893 30 H 0.133 0.867 31 H 0.216 0.784 32 H 0.178 0.822 33 H 0.283 0.717 34 H 0.196 0.804 35 H 0.184 0.816 36 H 0.147 0.853 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.010 0.990 40 H 0.013 0.987 41 H 0.076 0.924 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -19.261 -3.456 28.223 34.343 hybrid contribution 0.506 -0.190 -1.198 1.314 sum -18.755 -3.647 27.025 33.097 Atomic orbital electron populations 1.20938 0.80349 1.06578 1.07292 1.25400 1.02351 0.87832 0.92924 1.79895 0.88636 1.21259 1.16370 1.93377 1.21917 1.14059 1.86178 1.79868 1.19664 0.91195 1.13356 1.24501 0.89236 0.99718 0.94952 1.20658 1.09457 0.86779 0.93783 1.20990 0.75908 0.81466 0.91680 1.90901 1.49339 1.55800 1.47983 1.43136 1.64619 1.14542 1.06899 1.17327 0.93456 0.95871 0.84690 1.21171 0.98570 1.01048 0.97743 1.21187 0.96753 0.97331 0.91911 1.21540 0.98399 1.02983 1.02493 1.19319 0.89518 0.94293 0.89595 1.86100 1.50479 1.68018 1.21881 1.22872 1.00076 0.97774 0.78060 1.18979 0.92845 0.95416 0.93830 1.21368 1.13778 1.28448 0.94755 0.90666 1.26138 0.94364 0.95085 1.04436 1.70139 1.16402 1.34772 1.36069 0.85271 0.78208 0.79039 0.77145 1.18642 1.20890 1.18462 1.20246 1.02582 1.06132 0.92065 0.84440 0.89319 0.86692 0.78435 0.82222 0.71673 0.80414 0.81571 0.85270 0.91598 0.92039 0.99004 0.98661 0.92435 0.87812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.47 10.05 71.23 0.72 0.25 16 2 C 0.10 1.65 7.19 43.49 0.31 1.97 16 3 N -0.31 -8.04 12.98 -47.15 -0.61 -8.65 16 4 O -0.02 -0.71 13.71 70.18 0.96 0.25 16 5 N -0.30 -7.92 12.98 -47.16 -0.61 -8.53 16 6 C 0.10 1.74 5.68 43.49 0.25 1.99 16 7 C -0.07 -0.36 5.87 29.10 0.17 -0.19 16 8 C 0.51 8.09 7.56 87.66 0.66 8.76 16 9 O -0.56 -17.11 13.72 -3.05 -0.04 -17.15 16 10 N -0.64 -7.09 5.34 -303.55 -1.62 -8.71 16 11 C 0.18 3.81 6.28 38.14 0.24 4.05 16 12 C -0.17 -2.48 9.96 22.41 0.22 -2.26 16 13 C -0.05 -1.02 10.03 22.24 0.22 -0.79 16 14 C -0.23 -6.88 9.04 22.39 0.20 -6.68 16 15 C 0.12 4.46 6.68 22.49 0.15 4.61 16 16 O -0.35 -16.46 10.13 -92.43 -0.94 -17.40 16 17 C 0.09 4.00 4.68 71.98 0.34 4.34 16 18 C 0.03 1.54 5.34 29.85 0.16 1.70 16 19 C -0.55 -31.78 9.11 25.60 0.23 -31.54 16 20 H 0.08 4.01 7.74 -2.91 -0.02 3.99 16 21 C 0.00 -0.12 5.46 84.65 0.46 0.35 16 22 N -0.93 -59.16 13.29 21.45 0.28 -58.88 16 23 Si 0.98 44.42 29.54 68.60 2.03 46.44 16 24 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 25 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 26 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 27 C -0.19 -6.38 8.59 22.49 0.19 -6.18 16 28 H 0.14 -0.32 8.14 -2.39 -0.02 -0.34 16 29 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.11 0.10 7.78 -2.39 -0.02 0.09 16 31 H 0.20 -1.53 7.77 -2.39 -0.02 -1.55 16 32 H 0.16 0.08 8.14 -2.38 -0.02 0.06 16 33 H 0.44 -0.32 8.82 -92.70 -0.82 -1.13 16 34 H 0.18 0.82 8.06 -2.91 -0.02 0.79 16 35 H 0.17 1.88 8.06 -2.91 -0.02 1.85 16 36 H 0.13 3.76 6.29 -2.91 -0.02 3.74 16 37 H 0.07 2.80 7.67 -2.39 -0.02 2.78 16 38 H 0.06 2.66 7.65 -2.39 -0.02 2.64 16 39 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 40 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 41 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 42 H 0.10 4.16 6.42 -2.91 -0.02 4.14 16 Total: -1.00 -97.60 369.80 4.24 -93.37 By element: Atomic # 1 Polarization: -1.34 SS G_CDS: 0.26 Total: -1.08 kcal Atomic # 6 Polarization: -24.17 SS G_CDS: 4.53 Total: -19.64 kcal Atomic # 7 Polarization: -82.22 SS G_CDS: -2.56 Total: -84.78 kcal Atomic # 8 Polarization: -34.29 SS G_CDS: -0.02 Total: -34.31 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Total: -97.60 4.24 -93.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845238135.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.746 kcal (2) G-P(sol) polarization free energy of solvation -97.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds