Wall clock time and date at job start Tue Mar 31 2020 16:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29944 * 126.28912 * 2 1 4 4 O 1.21302 * 110.25007 * 179.73105 * 3 2 1 5 5 C 1.33643 * 109.81150 * 0.46726 * 4 3 2 6 6 C 1.50697 * 126.55111 * 179.79627 * 5 4 3 7 7 N 1.46498 * 109.47570 * 269.69410 * 6 5 4 8 8 C 1.46497 * 120.00137 * 270.00206 * 7 6 5 9 9 C 1.34775 * 119.99904 * 89.99988 * 7 6 5 10 10 O 1.21280 * 120.00014 * 0.02562 * 9 7 6 11 11 C 1.50697 * 120.00040 * 179.97438 * 9 7 6 12 12 C 1.50695 * 109.47436 * 179.97438 * 11 9 7 13 13 C 1.38300 * 119.93634 * 269.73208 * 12 11 9 14 14 C 1.38103 * 120.07235 * 179.72038 * 13 12 11 15 15 C 1.38881 * 119.92859 * 0.56979 * 14 13 12 16 16 O 1.35743 * 120.07033 * 179.67702 * 15 14 13 17 17 C 1.34829 * 117.00323 * 174.48588 * 16 15 14 18 18 H 1.08000 * 119.99772 * 5.06302 * 17 16 15 19 19 C 1.38655 * 120.00285 * 185.06067 * 17 16 15 20 20 N 1.31559 * 119.99902 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 120.00043 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.46873 * 89.99837 * 21 19 17 23 23 H 1.48495 * 109.47237 * 210.00095 * 21 19 17 24 24 H 1.48505 * 109.47176 * 330.00205 * 21 19 17 25 25 C 1.38884 * 119.86119 * 359.70391 * 15 14 13 26 26 C 1.38100 * 119.93123 * 0.02562 * 25 15 14 27 27 N 1.31129 * 106.89580 * 359.54488 * 5 4 3 28 28 H 1.09003 * 109.46651 * 269.96934 * 1 2 3 29 29 H 1.08990 * 109.47203 * 29.96749 * 1 2 3 30 30 H 1.09001 * 109.47165 * 149.97299 * 1 2 3 31 31 H 1.08998 * 109.46886 * 149.68893 * 6 5 4 32 32 H 1.09003 * 109.46936 * 29.69558 * 6 5 4 33 33 H 1.09003 * 109.47336 * 270.00035 * 8 7 6 34 34 H 1.09004 * 109.46912 * 29.99465 * 8 7 6 35 35 H 1.08995 * 109.47674 * 150.00083 * 8 7 6 36 36 H 1.08999 * 109.47119 * 60.00120 * 11 9 7 37 37 H 1.09004 * 109.47334 * 300.00265 * 11 9 7 38 38 H 1.08004 * 119.96372 * 359.97187 * 13 12 11 39 39 H 1.07998 * 120.03412 * 180.26808 * 14 13 12 40 40 H 0.97002 * 119.99895 * 179.97438 * 20 19 17 41 41 H 1.07996 * 120.03050 * 179.97438 * 25 15 14 42 42 H 1.08003 * 119.96708 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7123 0.0053 5 6 3.5299 -0.6213 -0.0009 6 6 4.7969 -1.4371 -0.0017 7 7 5.2070 -1.7010 -1.3831 8 6 4.7252 -2.8997 -2.0739 9 6 6.0276 -0.8411 -2.0184 10 8 6.4268 0.1510 -1.4464 11 6 6.4499 -1.1129 -3.4392 12 6 7.3591 -0.0085 -3.9131 13 6 6.8255 1.1059 -4.5345 14 6 7.6556 2.1223 -4.9647 15 6 9.0286 2.0192 -4.7834 16 8 9.8478 3.0136 -5.2110 17 6 11.1558 2.9043 -4.9027 18 1 11.5224 2.0150 -4.4117 19 6 12.0303 3.9337 -5.2162 20 7 13.3067 3.8268 -4.9158 21 14 11.3962 5.4721 -6.0649 22 1 10.9838 6.4671 -5.0426 23 1 12.4709 6.0489 -6.9118 24 1 10.2295 5.1233 -6.9150 25 6 9.5619 0.8963 -4.1640 26 6 8.7261 -0.1142 -3.7311 27 7 2.3030 -1.0841 -0.0007 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3633 0.8902 -0.5133 30 1 -0.3633 -0.8897 -0.5143 31 1 4.6208 -2.3822 0.5120 32 1 5.5844 -0.8856 0.5121 33 1 5.4205 -3.7217 -1.9031 34 1 3.7417 -3.1700 -1.6895 35 1 4.6551 -2.6995 -3.1430 36 1 5.5681 -1.1564 -4.0784 37 1 6.9792 -2.0647 -3.4852 38 1 5.7581 1.1832 -4.6799 39 1 7.2378 2.9942 -5.4460 40 1 13.9185 4.5467 -5.1354 41 1 10.6293 0.8131 -4.0220 42 1 9.1401 -0.9874 -3.2490 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848353006.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:41 Heat of formation + Delta-G solvation = 42.708641 kcal Electronic energy + Delta-G solvation = -27175.011799 eV Core-core repulsion = 23125.033008 eV Total energy + Delta-G solvation = -4049.978791 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.82635 -40.22212 -39.01552 -36.86882 -36.39315 -35.85927 -33.50961 -32.48386 -31.64211 -30.22267 -29.71107 -28.79516 -27.19218 -26.10932 -24.81150 -23.86194 -22.10687 -21.99215 -20.78223 -19.40738 -18.38387 -17.87847 -17.71871 -17.24995 -17.21666 -16.35366 -16.28872 -15.05832 -14.66696 -14.57583 -14.35770 -13.97395 -13.94727 -13.82918 -13.64995 -13.47903 -13.34205 -13.11894 -13.06707 -12.78000 -12.65134 -12.47774 -12.23189 -12.15220 -11.73884 -11.69600 -11.35731 -11.28996 -10.91724 -10.74264 -10.65644 -10.34393 -10.13194 -9.83872 -9.35856 -9.24348 -8.83457 -8.21531 -7.29063 -6.39085 -4.05333 0.80012 1.83853 2.15981 2.18116 2.33839 2.68927 2.84455 3.24384 3.28820 3.32115 3.42891 3.74872 4.26474 4.31534 4.54752 4.60013 4.72844 4.84453 4.89152 4.94332 4.98147 5.05707 5.07532 5.12381 5.17571 5.24222 5.28065 5.34432 5.54716 5.58338 5.66178 5.67523 5.76211 5.97165 6.15510 6.34921 6.57999 6.81196 6.95396 7.08019 7.23596 7.32514 7.63870 7.82975 7.89778 8.02360 8.06624 8.96341 9.59027 10.68547 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.019209 B = 0.002388 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.322963 B =11723.543749 C =12449.978363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.160 3.840 3 N -0.382 5.382 4 O 0.095 5.905 5 C 0.167 3.833 6 C 0.208 3.792 7 N -0.623 5.623 8 C 0.076 3.924 9 C 0.510 3.490 10 O -0.503 6.503 11 C -0.076 4.076 12 C -0.166 4.166 13 C -0.061 4.061 14 C -0.191 4.191 15 C 0.163 3.837 16 O -0.217 6.217 17 C -0.388 4.388 18 H 0.107 0.893 19 C 0.063 3.937 20 N -0.880 5.880 21 Si 0.905 3.095 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.260 1.260 25 C -0.219 4.219 26 C -0.056 4.056 27 N -0.478 5.478 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.108 0.892 39 H 0.116 0.884 40 H 0.279 0.721 41 H 0.133 0.867 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.258 -16.007 8.010 28.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.112 4.112 3 N -0.089 5.089 4 O 0.035 5.965 5 C -0.055 4.055 6 C 0.082 3.918 7 N -0.360 5.360 8 C -0.067 4.067 9 C 0.298 3.702 10 O -0.374 6.374 11 C -0.116 4.116 12 C -0.167 4.167 13 C -0.079 4.079 14 C -0.210 4.210 15 C 0.111 3.889 16 O -0.122 6.122 17 C -0.464 4.464 18 H 0.124 0.876 19 C -0.140 4.140 20 N -0.518 5.518 21 Si 0.731 3.269 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.184 1.184 25 C -0.238 4.238 26 C -0.075 4.075 27 N -0.214 5.214 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.109 0.891 31 H 0.143 0.857 32 H 0.141 0.859 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.112 0.888 37 H 0.115 0.885 38 H 0.126 0.874 39 H 0.134 0.866 40 H 0.089 0.911 41 H 0.151 0.849 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -22.464 -14.611 8.160 28.013 hybrid contribution -0.001 0.524 -0.222 0.570 sum -22.465 -14.086 7.937 27.679 Atomic orbital electron populations 1.20121 0.82907 1.04648 1.04241 1.25929 1.00611 0.83620 1.01073 1.74698 0.89561 1.24119 1.20540 1.85402 1.21955 1.24687 1.64416 1.29514 0.97384 0.82593 0.96040 1.19816 0.87962 0.98317 0.85740 1.48041 1.49360 1.25451 1.13144 1.21922 1.00255 0.86424 0.98114 1.21309 0.77341 0.82230 0.89283 1.90790 1.53167 1.26389 1.67095 1.20451 1.00062 0.99628 0.91471 1.18690 0.93233 0.97046 1.07716 1.20389 0.97858 0.92658 0.97012 1.20146 0.90739 1.00963 1.09136 1.19122 0.90030 0.88074 0.91677 1.83569 1.19810 1.41471 1.67377 1.20774 0.79028 1.06307 1.40284 0.87593 1.24469 0.94328 0.98531 0.96708 1.69649 1.02292 1.34173 1.45656 0.86181 0.78986 0.81777 0.79964 1.19869 1.20807 1.18371 1.21225 1.00966 0.95262 1.06385 1.20557 0.92367 0.97570 0.96971 1.71854 0.99623 1.29653 1.20243 0.89361 0.89513 0.89096 0.85701 0.85938 0.91710 0.90592 0.90443 0.88841 0.88462 0.87380 0.86562 0.91080 0.84916 0.87444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.40 10.51 36.01 0.38 -0.02 16 2 C 0.16 1.76 8.22 -156.37 -1.28 0.48 16 3 N -0.38 -5.16 12.16 30.90 0.38 -4.78 16 4 O 0.09 1.30 11.31 18.10 0.20 1.50 16 5 C 0.17 1.81 8.10 -13.06 -0.11 1.70 16 6 C 0.21 1.66 6.03 -5.20 -0.03 1.63 16 7 N -0.62 -5.49 2.86 -182.96 -0.52 -6.01 16 8 C 0.08 0.39 10.24 59.85 0.61 1.00 16 9 C 0.51 6.43 7.67 -10.99 -0.08 6.35 16 10 O -0.50 -8.71 15.61 5.56 0.09 -8.62 16 11 C -0.08 -0.87 4.38 -29.04 -0.13 -1.00 16 12 C -0.17 -2.72 4.38 -104.58 -0.46 -3.18 16 13 C -0.06 -1.07 9.69 -39.61 -0.38 -1.46 16 14 C -0.19 -3.93 9.99 -39.39 -0.39 -4.32 16 15 C 0.16 3.87 6.65 -39.10 -0.26 3.61 16 16 O -0.22 -5.87 8.59 0.07 0.00 -5.87 16 17 C -0.39 -11.13 9.95 30.89 0.31 -10.82 16 18 H 0.11 3.09 5.44 -52.49 -0.29 2.80 16 19 C 0.06 1.79 5.49 -17.51 -0.10 1.69 16 20 N -0.88 -25.70 13.96 55.48 0.77 -24.93 16 21 Si 0.91 22.08 28.62 -169.99 -4.86 17.21 16 22 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.26 -6.34 7.11 56.52 0.40 -5.94 16 25 C -0.22 -4.82 9.17 -39.39 -0.36 -5.18 16 26 C -0.06 -1.03 9.69 -39.61 -0.38 -1.41 16 27 N -0.48 -5.14 11.55 -9.87 -0.11 -5.26 16 28 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.13 0.57 8.07 -51.93 -0.42 0.15 16 32 H 0.12 1.04 7.42 -51.93 -0.39 0.65 16 33 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.08 0.36 8.07 -51.93 -0.42 -0.06 16 35 H 0.08 0.36 6.44 -51.93 -0.33 0.02 16 36 H 0.09 0.86 7.34 -51.93 -0.38 0.48 16 37 H 0.10 0.86 8.05 -51.93 -0.42 0.44 16 38 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 39 H 0.12 2.25 8.06 -52.49 -0.42 1.82 16 40 H 0.28 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.13 3.05 5.64 -52.49 -0.30 2.75 16 42 H 0.11 1.66 8.06 -52.48 -0.42 1.23 16 LS Contribution 367.64 15.07 5.54 5.54 Total: -1.00 -35.59 367.64 -6.22 -41.81 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -5.03 Total: 0.33 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: -2.67 Total: -10.93 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: 0.51 Total: -40.97 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.29 Total: -12.99 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.86 Total: 17.21 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.59 -6.22 -41.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848353006.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.517 kcal (2) G-P(sol) polarization free energy of solvation -35.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds