Wall clock time and date at job start Tue Mar 31 2020 16:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29944 * 126.28912 * 2 1 4 4 O 1.21302 * 110.25007 * 179.73105 * 3 2 1 5 5 C 1.33643 * 109.81150 * 0.46726 * 4 3 2 6 6 C 1.50697 * 126.55111 * 179.79627 * 5 4 3 7 7 N 1.46498 * 109.47570 * 269.69410 * 6 5 4 8 8 C 1.46497 * 120.00137 * 270.00206 * 7 6 5 9 9 C 1.34775 * 119.99904 * 89.99988 * 7 6 5 10 10 O 1.21280 * 120.00014 * 0.02562 * 9 7 6 11 11 C 1.50697 * 120.00040 * 179.97438 * 9 7 6 12 12 C 1.50695 * 109.47436 * 179.97438 * 11 9 7 13 13 C 1.38300 * 119.93634 * 269.73208 * 12 11 9 14 14 C 1.38103 * 120.07235 * 179.72038 * 13 12 11 15 15 C 1.38881 * 119.92859 * 0.56979 * 14 13 12 16 16 O 1.35743 * 120.07033 * 179.67702 * 15 14 13 17 17 C 1.34829 * 117.00323 * 174.48588 * 16 15 14 18 18 H 1.08000 * 119.99772 * 5.06302 * 17 16 15 19 19 C 1.38655 * 120.00285 * 185.06067 * 17 16 15 20 20 N 1.31559 * 119.99902 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 120.00043 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.46873 * 89.99837 * 21 19 17 23 23 H 1.48495 * 109.47237 * 210.00095 * 21 19 17 24 24 H 1.48505 * 109.47176 * 330.00205 * 21 19 17 25 25 C 1.38884 * 119.86119 * 359.70391 * 15 14 13 26 26 C 1.38100 * 119.93123 * 0.02562 * 25 15 14 27 27 N 1.31129 * 106.89580 * 359.54488 * 5 4 3 28 28 H 1.09003 * 109.46651 * 269.96934 * 1 2 3 29 29 H 1.08990 * 109.47203 * 29.96749 * 1 2 3 30 30 H 1.09001 * 109.47165 * 149.97299 * 1 2 3 31 31 H 1.08998 * 109.46886 * 149.68893 * 6 5 4 32 32 H 1.09003 * 109.46936 * 29.69558 * 6 5 4 33 33 H 1.09003 * 109.47336 * 270.00035 * 8 7 6 34 34 H 1.09004 * 109.46912 * 29.99465 * 8 7 6 35 35 H 1.08995 * 109.47674 * 150.00083 * 8 7 6 36 36 H 1.08999 * 109.47119 * 60.00120 * 11 9 7 37 37 H 1.09004 * 109.47334 * 300.00265 * 11 9 7 38 38 H 1.08004 * 119.96372 * 359.97187 * 13 12 11 39 39 H 1.07998 * 120.03412 * 180.26808 * 14 13 12 40 40 H 0.97002 * 119.99895 * 179.97438 * 20 19 17 41 41 H 1.07996 * 120.03050 * 179.97438 * 25 15 14 42 42 H 1.08003 * 119.96708 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7123 0.0053 5 6 3.5299 -0.6213 -0.0009 6 6 4.7969 -1.4371 -0.0017 7 7 5.2070 -1.7010 -1.3831 8 6 4.7252 -2.8997 -2.0739 9 6 6.0276 -0.8411 -2.0184 10 8 6.4268 0.1510 -1.4464 11 6 6.4499 -1.1129 -3.4392 12 6 7.3591 -0.0085 -3.9131 13 6 6.8255 1.1059 -4.5345 14 6 7.6556 2.1223 -4.9647 15 6 9.0286 2.0192 -4.7834 16 8 9.8478 3.0136 -5.2110 17 6 11.1558 2.9043 -4.9027 18 1 11.5224 2.0150 -4.4117 19 6 12.0303 3.9337 -5.2162 20 7 13.3067 3.8268 -4.9158 21 14 11.3962 5.4721 -6.0649 22 1 10.9838 6.4671 -5.0426 23 1 12.4709 6.0489 -6.9118 24 1 10.2295 5.1233 -6.9150 25 6 9.5619 0.8963 -4.1640 26 6 8.7261 -0.1142 -3.7311 27 7 2.3030 -1.0841 -0.0007 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3633 0.8902 -0.5133 30 1 -0.3633 -0.8897 -0.5143 31 1 4.6208 -2.3822 0.5120 32 1 5.5844 -0.8856 0.5121 33 1 5.4205 -3.7217 -1.9031 34 1 3.7417 -3.1700 -1.6895 35 1 4.6551 -2.6995 -3.1430 36 1 5.5681 -1.1564 -4.0784 37 1 6.9792 -2.0647 -3.4852 38 1 5.7581 1.1832 -4.6799 39 1 7.2378 2.9942 -5.4460 40 1 13.9185 4.5467 -5.1354 41 1 10.6293 0.8131 -4.0220 42 1 9.1401 -0.9874 -3.2490 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848353006.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:40 Heat of formation + Delta-G solvation = 17.312077 kcal Electronic energy + Delta-G solvation = -27176.113077 eV Core-core repulsion = 23125.033008 eV Total energy + Delta-G solvation = -4051.080069 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -46.67770 -41.29207 -40.60456 -38.41854 -37.28552 -36.74108 -34.55125 -34.27835 -32.96221 -31.80965 -30.37524 -29.65368 -28.29838 -27.28110 -26.36733 -24.70376 -23.71579 -22.93290 -22.14201 -20.36417 -19.80459 -19.25860 -19.08884 -18.54466 -18.08003 -17.21444 -17.13821 -16.64921 -16.14702 -15.82648 -15.66250 -15.38220 -15.18455 -15.05311 -14.54176 -14.49292 -14.38020 -14.22579 -14.07553 -13.96878 -13.71150 -13.57423 -13.24743 -13.04783 -12.90037 -12.82274 -12.52100 -12.47115 -12.41380 -12.28233 -12.17431 -11.93229 -11.27809 -11.23099 -10.94870 -10.79353 -9.96839 -9.78956 -8.98514 -8.50618 -6.22752 -0.03802 0.58389 0.61261 1.06243 1.29441 1.34149 1.47096 1.50367 1.87983 2.07385 2.27291 2.59478 2.76791 3.03265 3.04651 3.17468 3.71956 3.86832 3.90126 4.02986 4.15136 4.22831 4.31558 4.35819 4.45359 4.48985 4.55171 4.56942 4.65515 4.69889 4.79151 4.81078 4.84477 4.97244 5.05360 5.06895 5.25089 5.33202 5.37474 5.56890 5.73410 5.79639 5.90931 6.18688 6.29382 6.83808 7.05381 7.12911 7.58883 8.61069 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.019209 B = 0.002388 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.322963 B =11723.543749 C =12449.978363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.163 3.837 3 N -0.417 5.417 4 O 0.059 5.941 5 C 0.171 3.829 6 C 0.205 3.795 7 N -0.612 5.612 8 C 0.067 3.933 9 C 0.509 3.491 10 O -0.563 6.563 11 C -0.076 4.076 12 C -0.138 4.138 13 C -0.062 4.062 14 C -0.195 4.195 15 C 0.118 3.882 16 O -0.247 6.247 17 C -0.399 4.399 18 H 0.081 0.919 19 C 0.009 3.991 20 N -0.923 5.923 21 Si 0.970 3.030 22 H -0.269 1.269 23 H -0.264 1.264 24 H -0.263 1.263 25 C -0.237 4.237 26 C -0.060 4.060 27 N -0.479 5.479 28 H 0.105 0.895 29 H 0.092 0.908 30 H 0.108 0.892 31 H 0.166 0.834 32 H 0.113 0.887 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.129 0.871 37 H 0.135 0.865 38 H 0.145 0.855 39 H 0.124 0.876 40 H 0.285 0.715 41 H 0.108 0.892 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.993 -18.810 8.002 33.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.110 4.110 3 N -0.130 5.130 4 O 0.005 5.995 5 C -0.051 4.051 6 C 0.079 3.921 7 N -0.347 5.347 8 C -0.074 4.074 9 C 0.299 3.701 10 O -0.440 6.440 11 C -0.115 4.115 12 C -0.139 4.139 13 C -0.079 4.079 14 C -0.215 4.215 15 C 0.070 3.930 16 O -0.155 6.155 17 C -0.475 4.475 18 H 0.099 0.901 19 C -0.189 4.189 20 N -0.563 5.563 21 Si 0.792 3.208 22 H -0.194 1.194 23 H -0.189 1.189 24 H -0.188 1.188 25 C -0.256 4.256 26 C -0.078 4.078 27 N -0.215 5.215 28 H 0.123 0.877 29 H 0.111 0.889 30 H 0.127 0.873 31 H 0.183 0.817 32 H 0.131 0.869 33 H 0.108 0.892 34 H 0.103 0.897 35 H 0.108 0.892 36 H 0.147 0.853 37 H 0.153 0.847 38 H 0.163 0.837 39 H 0.142 0.858 40 H 0.094 0.906 41 H 0.126 0.874 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -26.226 -17.503 8.157 32.569 hybrid contribution 0.832 1.032 -0.071 1.328 sum -25.395 -16.471 8.086 31.330 Atomic orbital electron populations 1.20363 0.80101 1.05800 1.05676 1.26748 1.02220 0.83132 0.98904 1.74712 0.89813 1.25559 1.22875 1.85365 1.22378 1.26135 1.65581 1.30091 0.98333 0.81902 0.94793 1.20159 0.86631 0.99606 0.85661 1.48020 1.47828 1.25539 1.13316 1.22255 1.01321 0.85327 0.98493 1.21404 0.77402 0.81822 0.89493 1.90797 1.55747 1.29008 1.68403 1.20598 1.00720 0.98917 0.91255 1.19297 0.93266 0.97561 1.03816 1.20887 0.99356 0.91876 0.95825 1.20468 0.89672 1.02341 1.08971 1.19668 0.91137 0.88403 0.93824 1.83509 1.18939 1.43266 1.69776 1.20719 0.80409 1.05894 1.40483 0.90110 1.25280 0.94515 1.01524 0.97618 1.69729 1.03338 1.35548 1.47735 0.85226 0.78562 0.77952 0.79010 1.19409 1.18857 1.18757 1.21274 1.00518 0.96445 1.07391 1.20931 0.93094 0.97444 0.96310 1.71895 0.99495 1.29459 1.20637 0.87665 0.88926 0.87315 0.81697 0.86863 0.89204 0.89733 0.89202 0.85301 0.84667 0.83710 0.85797 0.90573 0.87384 0.84333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.65 10.51 71.24 0.75 0.10 16 2 C 0.16 3.28 8.22 138.46 1.14 4.42 16 3 N -0.42 -11.01 12.16 -60.32 -0.73 -11.75 16 4 O 0.06 1.59 11.31 74.83 0.85 2.44 16 5 C 0.17 3.39 8.10 88.38 0.72 4.10 16 6 C 0.21 2.72 6.03 85.63 0.52 3.24 16 7 N -0.61 -8.33 2.86 -851.16 -2.43 -10.76 16 8 C 0.07 0.33 10.24 127.77 1.31 1.63 16 9 C 0.51 11.09 7.67 87.66 0.67 11.76 16 10 O -0.56 -18.73 15.61 -3.03 -0.05 -18.78 16 11 C -0.08 -1.34 4.38 29.10 0.13 -1.21 16 12 C -0.14 -4.13 4.38 -19.83 -0.09 -4.22 16 13 C -0.06 -2.01 9.69 22.25 0.22 -1.80 16 14 C -0.20 -8.03 9.99 22.39 0.22 -7.81 16 15 C 0.12 5.86 6.65 22.58 0.15 6.01 16 16 O -0.25 -14.09 8.59 -22.66 -0.19 -14.28 16 17 C -0.40 -24.38 9.95 67.92 0.68 -23.70 16 18 H 0.08 5.15 5.44 -2.91 -0.02 5.14 16 19 C 0.01 0.53 5.49 84.83 0.47 1.00 16 20 N -0.92 -56.47 13.96 21.61 0.30 -56.17 16 21 Si 0.97 47.12 28.62 68.60 1.96 49.08 16 22 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 23 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 24 H -0.26 -12.76 7.11 99.48 0.71 -12.06 16 25 C -0.24 -10.87 9.17 22.39 0.21 -10.67 16 26 C -0.06 -2.10 9.69 22.25 0.22 -1.89 16 27 N -0.48 -9.12 11.55 -303.20 -3.50 -12.62 16 28 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.09 0.88 8.14 -2.39 -0.02 0.87 16 30 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.17 0.83 8.07 -2.39 -0.02 0.81 16 32 H 0.11 1.78 7.42 -2.39 -0.02 1.76 16 33 H 0.09 0.08 8.14 -2.39 -0.02 0.06 16 34 H 0.08 0.35 8.07 -2.38 -0.02 0.33 16 35 H 0.09 0.26 6.44 -2.39 -0.02 0.25 16 36 H 0.13 1.50 7.34 -2.39 -0.02 1.48 16 37 H 0.14 1.49 8.05 -2.38 -0.02 1.47 16 38 H 0.15 3.70 8.06 -2.91 -0.02 3.67 16 39 H 0.12 4.78 8.06 -2.91 -0.02 4.76 16 40 H 0.28 15.95 8.31 -92.71 -0.77 15.18 16 41 H 0.11 5.41 5.64 -2.91 -0.02 5.40 16 42 H 0.14 3.94 8.06 -2.91 -0.02 3.92 16 Total: -1.00 -85.05 367.64 4.55 -80.49 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: 1.06 Total: 11.39 kcal Atomic # 6 Polarization: -26.32 SS G_CDS: 7.29 Total: -19.03 kcal Atomic # 7 Polarization: -84.94 SS G_CDS: -6.37 Total: -91.30 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: 0.60 Total: -30.63 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 1.96 Total: 49.08 kcal Total: -85.05 4.55 -80.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848353006.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.804 kcal (2) G-P(sol) polarization free energy of solvation -85.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds