Wall clock time and date at job start Tue Mar 31 2020 16:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50696 * 110.86338 * 2 1 4 4 O 1.21287 * 120.00156 * 95.69846 * 3 2 1 5 5 N 1.34774 * 119.99898 * 275.70337 * 3 2 1 6 6 C 1.46500 * 119.99908 * 179.97438 * 5 3 2 7 7 C 1.50700 * 109.47123 * 179.97438 * 6 5 3 8 8 O 1.21293 * 120.00251 * 0.02562 * 7 6 5 9 9 N 1.34784 * 120.00279 * 179.97438 * 7 6 5 10 10 C 1.37095 * 120.00254 * 180.02562 * 9 7 6 11 11 H 1.08003 * 119.99473 * 0.02562 * 10 9 7 12 12 C 1.38948 * 120.00153 * 180.02562 * 10 9 7 13 13 N 1.31407 * 120.00346 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 119.99725 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.47084 * 90.00455 * 14 12 10 16 16 H 1.48495 * 109.47114 * 210.00153 * 14 12 10 17 17 H 1.48497 * 109.47332 * 330.00454 * 14 12 10 18 18 C 1.54738 * 110.97327 * 123.80209 * 2 1 3 19 19 C 1.51790 * 102.50634 * 93.90110 * 18 2 1 20 20 C 1.47647 * 125.85710 * 195.35247 * 19 18 2 21 21 C 1.39609 * 120.14712 * 359.75125 * 20 19 18 22 22 C 1.37962 * 119.84483 * 179.79348 * 21 20 19 23 23 C 1.38359 * 120.14536 * 0.46312 * 22 21 20 24 24 C 1.38352 * 120.30699 * 359.78652 * 23 22 21 25 25 C 1.37958 * 120.14819 * 359.97438 * 24 23 22 26 26 N 1.29080 * 108.27532 * 15.40071 * 19 18 2 27 27 O 1.41396 * 112.87356 * 0.31130 * 26 19 18 28 28 H 1.09002 * 109.47153 * 59.29827 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.30018 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.29999 * 1 2 3 31 31 H 0.96997 * 120.00287 * 359.97438 * 5 3 2 32 32 H 1.09001 * 109.47130 * 299.99900 * 6 5 3 33 33 H 1.08999 * 109.47341 * 60.00272 * 6 5 3 34 34 H 0.97001 * 119.99740 * 359.97438 * 9 7 6 35 35 H 0.96991 * 120.00463 * 179.97438 * 13 12 10 36 36 H 1.09001 * 110.79510 * 212.15900 * 18 2 1 37 37 H 1.09001 * 110.79435 * 335.62125 * 18 2 1 38 38 H 1.07992 * 120.08117 * 0.02562 * 21 20 19 39 39 H 1.08001 * 119.92631 * 180.23424 * 22 21 20 40 40 H 1.08006 * 119.84602 * 179.77165 * 23 22 21 41 41 H 1.08001 * 119.92550 * 179.97438 * 24 23 22 42 42 H 1.07999 * 120.07619 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0667 1.4081 0.0000 4 8 2.3801 1.9377 1.0452 5 7 2.1983 2.0791 -1.1614 6 6 2.7195 3.4483 -1.1614 7 6 2.7671 3.9677 -2.5752 8 8 2.4013 3.2637 -3.4927 9 7 3.2154 5.2150 -2.8203 10 6 3.2583 5.6877 -4.1064 11 1 2.9324 5.0607 -4.9232 12 6 3.7209 6.9733 -4.3591 13 7 3.7615 7.4266 -5.5918 14 14 4.2837 8.0578 -2.9461 15 1 5.7349 7.8496 -2.7100 16 1 4.0370 9.4820 -3.2866 17 1 3.5267 7.7040 -1.7186 18 6 2.0838 -0.8038 1.2006 19 6 2.2956 -2.1830 0.6032 20 6 2.5085 -3.4312 1.3627 21 6 2.5328 -3.4072 2.7583 22 6 2.7279 -4.5778 3.4618 23 6 2.9088 -5.7721 2.7870 24 6 2.8911 -5.8021 1.4039 25 6 2.6921 -4.6397 0.6881 26 7 2.2587 -2.0771 -0.6827 27 8 2.0462 -0.7491 -1.1190 28 1 -0.3633 0.5247 -0.8836 29 1 -0.3633 0.5029 0.8962 30 1 -0.3634 -1.0276 -0.0126 31 1 1.9479 1.6556 -1.9973 32 1 2.0687 4.0848 -0.5618 33 1 3.7240 3.4547 -0.7383 34 1 3.5070 5.7784 -2.0865 35 1 4.0841 8.3241 -5.7682 36 1 3.0279 -0.3824 1.5461 37 1 1.3557 -0.8401 2.0109 38 1 2.3954 -2.4751 3.2862 39 1 2.7431 -4.5614 4.5416 40 1 3.0649 -6.6851 3.3426 41 1 3.0335 -6.7377 0.8835 42 1 2.6789 -4.6644 -0.3915 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857258024.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:12 Heat of formation + Delta-G solvation = -19.702218 kcal Electronic energy + Delta-G solvation = -26924.609728 eV Core-core repulsion = 22871.924598 eV Total energy + Delta-G solvation = -4052.685129 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.19211 -39.65342 -38.99926 -38.20223 -34.71647 -34.18090 -33.72540 -32.70649 -31.81350 -31.44432 -30.53991 -28.12584 -27.72503 -24.77348 -23.99108 -23.36632 -22.49740 -20.63468 -19.99655 -19.63221 -18.76619 -17.99506 -17.07386 -16.39284 -16.12532 -15.92496 -15.67065 -15.35320 -15.15820 -15.10158 -14.71078 -14.38259 -14.18320 -13.98279 -13.90829 -13.65148 -13.28568 -13.17615 -12.73380 -12.67325 -12.50049 -12.48450 -12.20083 -12.12979 -11.84587 -11.79613 -11.67824 -11.25151 -11.02989 -10.65861 -10.48612 -10.07335 -9.85558 -9.71277 -9.44112 -9.04154 -8.95018 -8.79576 -8.31779 -6.41456 -3.94160 0.28279 0.92479 1.85870 2.33287 2.67859 2.95306 2.98088 3.02970 3.11475 3.37632 3.53584 3.71484 3.92811 4.02368 4.07068 4.43687 4.48278 4.49580 4.50690 4.63335 4.67765 4.91009 5.03753 5.07272 5.12577 5.18021 5.24763 5.33561 5.43928 5.51275 5.56859 5.60768 5.70529 5.73270 5.76010 5.95672 5.97446 6.02235 6.39557 6.43049 6.99045 7.41739 7.55739 7.97441 8.12246 8.43805 8.80797 9.28385 9.61628 10.70678 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.029127 B = 0.002059 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.068536 B =13598.705890 C =13861.853980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.054 3.946 3 C 0.533 3.467 4 O -0.539 6.539 5 N -0.689 5.689 6 C 0.103 3.897 7 C 0.437 3.563 8 O -0.574 6.574 9 N -0.575 5.575 10 C -0.310 4.310 11 H 0.122 0.878 12 C 0.045 3.955 13 N -0.873 5.873 14 Si 0.879 3.121 15 H -0.269 1.269 16 H -0.275 1.275 17 H -0.267 1.267 18 C -0.124 4.124 19 C 0.123 3.877 20 C -0.040 4.040 21 C -0.086 4.086 22 C -0.123 4.123 23 C -0.101 4.101 24 C -0.123 4.123 25 C -0.079 4.079 26 N -0.276 5.276 27 O -0.175 6.175 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.419 0.581 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.374 0.626 35 H 0.276 0.724 36 H 0.115 0.885 37 H 0.112 0.888 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.126 0.874 41 H 0.129 0.871 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.736 -22.629 20.858 31.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.010 3.990 3 C 0.316 3.684 4 O -0.416 6.416 5 N -0.342 5.342 6 C -0.024 4.024 7 C 0.222 3.778 8 O -0.458 6.458 9 N -0.213 5.213 10 C -0.439 4.439 11 H 0.140 0.860 12 C -0.159 4.159 13 N -0.512 5.512 14 Si 0.705 3.295 15 H -0.194 1.194 16 H -0.200 1.200 17 H -0.193 1.193 18 C -0.164 4.164 19 C -0.066 4.066 20 C -0.042 4.042 21 C -0.106 4.106 22 C -0.141 4.141 23 C -0.120 4.120 24 C -0.141 4.141 25 C -0.099 4.099 26 N -0.016 5.016 27 O -0.195 6.195 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.259 0.741 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.207 0.793 35 H 0.086 0.914 36 H 0.133 0.867 37 H 0.130 0.870 38 H 0.149 0.851 39 H 0.148 0.852 40 H 0.144 0.856 41 H 0.147 0.853 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.602 -22.862 19.558 30.302 hybrid contribution 0.288 1.447 1.256 1.937 sum -3.314 -21.415 20.814 30.047 Atomic orbital electron populations 1.22120 0.90726 1.03999 1.04515 1.23134 0.96835 0.91375 0.87680 1.19673 0.78349 0.86256 0.84164 1.90726 1.50400 1.69046 1.31472 1.45682 1.63557 1.14923 1.10082 1.21068 1.00749 0.83343 0.97256 1.19579 0.85181 0.83541 0.89464 1.90568 1.52822 1.57113 1.45322 1.42111 1.57456 1.12674 1.09083 1.19451 1.41551 0.99347 0.83506 0.86026 1.25067 0.97249 0.96853 0.96744 1.69612 1.44910 1.18209 1.18481 0.86667 0.79799 0.81164 0.81828 1.19388 1.19959 1.19273 1.22853 1.05038 0.89260 0.99205 1.24328 0.95308 0.94678 0.92313 1.17800 1.04452 0.89453 0.92457 1.21288 0.97841 0.99142 0.92298 1.21114 1.00424 0.92232 1.00310 1.21381 0.97832 0.98267 0.94543 1.21157 1.00408 0.98260 0.94277 1.21406 0.96360 0.91326 1.00802 1.78460 1.12411 0.97909 1.12787 1.91372 1.82767 1.14995 1.30330 0.90068 0.89972 0.90789 0.74127 0.89364 0.89445 0.79270 0.91363 0.86677 0.86994 0.85067 0.85223 0.85558 0.85281 0.84829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 8.95 37.16 0.33 -1.27 16 2 C 0.05 0.68 1.23 -90.86 -0.11 0.57 16 3 C 0.53 8.15 6.75 -10.99 -0.07 8.08 16 4 O -0.54 -9.06 16.14 5.55 0.09 -8.97 16 5 N -0.69 -11.51 5.46 -61.47 -0.34 -11.85 16 6 C 0.10 1.80 6.15 -5.19 -0.03 1.77 16 7 C 0.44 9.72 7.85 -10.98 -0.09 9.63 16 8 O -0.57 -14.85 15.24 5.55 0.08 -14.77 16 9 N -0.58 -13.44 5.09 -10.96 -0.06 -13.50 16 10 C -0.31 -8.60 10.16 -14.93 -0.15 -8.75 16 11 H 0.12 3.85 7.39 -52.48 -0.39 3.46 16 12 C 0.05 1.21 5.50 -17.47 -0.10 1.12 16 13 N -0.87 -25.02 13.96 55.50 0.77 -24.24 16 14 Si 0.88 19.00 27.74 -169.99 -4.71 14.28 16 15 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 16 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 17 H -0.27 -5.27 6.52 56.52 0.37 -4.90 16 18 C -0.12 -1.28 5.03 -26.43 -0.13 -1.41 16 19 C 0.12 1.33 7.16 -79.37 -0.57 0.76 16 20 C -0.04 -0.36 5.87 -105.03 -0.62 -0.97 16 21 C -0.09 -0.58 9.61 -39.17 -0.38 -0.96 16 22 C -0.12 -0.68 10.03 -39.64 -0.40 -1.08 16 23 C -0.10 -0.55 10.04 -39.49 -0.40 -0.94 16 24 C -0.12 -0.78 10.03 -39.64 -0.40 -1.17 16 25 C -0.08 -0.65 9.69 -39.17 -0.38 -1.03 16 26 N -0.28 -3.72 12.12 35.33 0.43 -3.29 16 27 O -0.17 -2.62 11.50 -11.37 -0.13 -2.75 16 28 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.42 7.36 7.08 -40.82 -0.29 7.08 16 32 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 33 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.37 7.66 5.76 -40.82 -0.24 7.42 16 35 H 0.28 7.28 8.31 -40.82 -0.34 6.94 16 36 H 0.12 1.25 7.55 -51.93 -0.39 0.86 16 37 H 0.11 0.85 7.74 -51.93 -0.40 0.45 16 38 H 0.13 0.67 7.38 -52.49 -0.39 0.28 16 39 H 0.13 0.43 8.06 -52.49 -0.42 0.00 16 40 H 0.13 0.40 8.06 -52.48 -0.42 -0.03 16 41 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 42 H 0.13 1.13 7.84 -52.49 -0.41 0.72 16 LS Contribution 365.94 15.07 5.51 5.51 Total: -1.00 -33.81 365.94 -6.89 -40.70 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: -5.05 Total: 14.54 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: -3.48 Total: 4.33 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: 0.81 Total: -52.88 kcal Atomic # 8 Polarization: -26.54 SS G_CDS: 0.04 Total: -26.49 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -4.71 Total: 14.28 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.81 -6.89 -40.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857258024.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.993 kcal (2) G-P(sol) polarization free energy of solvation -33.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds