Wall clock time and date at job start Tue Mar 31 2020 16:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50696 * 110.86338 * 2 1 4 4 O 1.21287 * 120.00156 * 95.69846 * 3 2 1 5 5 N 1.34774 * 119.99898 * 275.70337 * 3 2 1 6 6 C 1.46500 * 119.99908 * 179.97438 * 5 3 2 7 7 C 1.50700 * 109.47123 * 179.97438 * 6 5 3 8 8 O 1.21293 * 120.00251 * 0.02562 * 7 6 5 9 9 N 1.34784 * 120.00279 * 179.97438 * 7 6 5 10 10 C 1.37095 * 120.00254 * 180.02562 * 9 7 6 11 11 H 1.08003 * 119.99473 * 0.02562 * 10 9 7 12 12 C 1.38948 * 120.00153 * 180.02562 * 10 9 7 13 13 N 1.31407 * 120.00346 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 119.99725 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.47084 * 90.00455 * 14 12 10 16 16 H 1.48495 * 109.47114 * 210.00153 * 14 12 10 17 17 H 1.48497 * 109.47332 * 330.00454 * 14 12 10 18 18 C 1.54738 * 110.97327 * 123.80209 * 2 1 3 19 19 C 1.51790 * 102.50634 * 93.90110 * 18 2 1 20 20 C 1.47647 * 125.85710 * 195.35247 * 19 18 2 21 21 C 1.39609 * 120.14712 * 359.75125 * 20 19 18 22 22 C 1.37962 * 119.84483 * 179.79348 * 21 20 19 23 23 C 1.38359 * 120.14536 * 0.46312 * 22 21 20 24 24 C 1.38352 * 120.30699 * 359.78652 * 23 22 21 25 25 C 1.37958 * 120.14819 * 359.97438 * 24 23 22 26 26 N 1.29080 * 108.27532 * 15.40071 * 19 18 2 27 27 O 1.41396 * 112.87356 * 0.31130 * 26 19 18 28 28 H 1.09002 * 109.47153 * 59.29827 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.30018 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.29999 * 1 2 3 31 31 H 0.96997 * 120.00287 * 359.97438 * 5 3 2 32 32 H 1.09001 * 109.47130 * 299.99900 * 6 5 3 33 33 H 1.08999 * 109.47341 * 60.00272 * 6 5 3 34 34 H 0.97001 * 119.99740 * 359.97438 * 9 7 6 35 35 H 0.96991 * 120.00463 * 179.97438 * 13 12 10 36 36 H 1.09001 * 110.79510 * 212.15900 * 18 2 1 37 37 H 1.09001 * 110.79435 * 335.62125 * 18 2 1 38 38 H 1.07992 * 120.08117 * 0.02562 * 21 20 19 39 39 H 1.08001 * 119.92631 * 180.23424 * 22 21 20 40 40 H 1.08006 * 119.84602 * 179.77165 * 23 22 21 41 41 H 1.08001 * 119.92550 * 179.97438 * 24 23 22 42 42 H 1.07999 * 120.07619 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0667 1.4081 0.0000 4 8 2.3801 1.9377 1.0452 5 7 2.1983 2.0791 -1.1614 6 6 2.7195 3.4483 -1.1614 7 6 2.7671 3.9677 -2.5752 8 8 2.4013 3.2637 -3.4927 9 7 3.2154 5.2150 -2.8203 10 6 3.2583 5.6877 -4.1064 11 1 2.9324 5.0607 -4.9232 12 6 3.7209 6.9733 -4.3591 13 7 3.7615 7.4266 -5.5918 14 14 4.2837 8.0578 -2.9461 15 1 5.7349 7.8496 -2.7100 16 1 4.0370 9.4820 -3.2866 17 1 3.5267 7.7040 -1.7186 18 6 2.0838 -0.8038 1.2006 19 6 2.2956 -2.1830 0.6032 20 6 2.5085 -3.4312 1.3627 21 6 2.5328 -3.4072 2.7583 22 6 2.7279 -4.5778 3.4618 23 6 2.9088 -5.7721 2.7870 24 6 2.8911 -5.8021 1.4039 25 6 2.6921 -4.6397 0.6881 26 7 2.2587 -2.0771 -0.6827 27 8 2.0462 -0.7491 -1.1190 28 1 -0.3633 0.5247 -0.8836 29 1 -0.3633 0.5029 0.8962 30 1 -0.3634 -1.0276 -0.0126 31 1 1.9479 1.6556 -1.9973 32 1 2.0687 4.0848 -0.5618 33 1 3.7240 3.4547 -0.7383 34 1 3.5070 5.7784 -2.0865 35 1 4.0841 8.3241 -5.7682 36 1 3.0279 -0.3824 1.5461 37 1 1.3557 -0.8401 2.0109 38 1 2.3954 -2.4751 3.2862 39 1 2.7431 -4.5614 4.5416 40 1 3.0649 -6.6851 3.3426 41 1 3.0335 -6.7377 0.8835 42 1 2.6789 -4.6644 -0.3915 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000857258024.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:11 Heat of formation + Delta-G solvation = -44.684778 kcal Electronic energy + Delta-G solvation = -26925.693053 eV Core-core repulsion = 22871.924598 eV Total energy + Delta-G solvation = -4053.768454 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.17508 -40.79182 -40.07182 -39.52618 -36.37684 -35.57205 -34.84983 -33.87500 -33.61130 -31.93587 -31.17443 -29.65406 -28.55123 -26.56000 -24.67200 -24.34864 -23.17387 -21.58954 -21.48353 -20.95412 -20.51240 -19.19694 -17.80137 -17.63345 -17.23170 -17.07352 -16.91708 -16.63101 -16.58069 -16.04508 -15.80993 -15.59491 -15.14009 -15.08229 -14.87956 -14.50519 -14.36046 -14.27724 -14.17487 -14.07869 -13.65842 -13.47691 -13.43162 -13.30169 -12.98803 -12.67682 -12.46918 -12.36763 -12.20786 -12.01588 -11.77378 -11.61084 -11.41072 -10.88778 -10.71118 -10.39641 -10.31237 -9.91617 -9.60729 -8.47566 -6.10352 -0.34461 0.45328 1.16221 1.17609 1.29143 1.32635 1.42811 1.67951 1.75152 1.83343 2.18988 2.74863 2.86763 2.90606 3.07970 3.13952 3.19006 3.48631 3.62923 3.95410 4.02723 4.05454 4.19761 4.29965 4.32379 4.34288 4.39507 4.46714 4.52308 4.55751 4.58089 4.73377 4.95176 4.97669 5.05844 5.10716 5.42217 5.45422 5.50332 5.56395 5.84979 5.98157 6.10036 6.28212 6.45485 6.75270 6.82692 7.25164 7.74949 8.68966 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.029127 B = 0.002059 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.068536 B =13598.705890 C =13861.853980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.049 3.951 3 C 0.536 3.464 4 O -0.551 6.551 5 N -0.699 5.699 6 C 0.115 3.885 7 C 0.441 3.559 8 O -0.616 6.616 9 N -0.575 5.575 10 C -0.334 4.334 11 H 0.061 0.939 12 C -0.009 4.009 13 N -0.925 5.925 14 Si 0.961 3.039 15 H -0.257 1.257 16 H -0.272 1.272 17 H -0.230 1.230 18 C -0.120 4.120 19 C 0.144 3.856 20 C -0.068 4.068 21 C -0.084 4.084 22 C -0.123 4.123 23 C -0.095 4.095 24 C -0.129 4.129 25 C -0.096 4.096 26 N -0.315 5.315 27 O -0.210 6.210 28 H 0.070 0.930 29 H 0.101 0.899 30 H 0.083 0.917 31 H 0.414 0.586 32 H 0.115 0.885 33 H 0.109 0.891 34 H 0.393 0.607 35 H 0.282 0.718 36 H 0.112 0.888 37 H 0.145 0.855 38 H 0.149 0.851 39 H 0.158 0.842 40 H 0.154 0.846 41 H 0.146 0.854 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.488 -23.282 25.839 34.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.006 3.994 3 C 0.320 3.680 4 O -0.430 6.430 5 N -0.352 5.352 6 C -0.012 4.012 7 C 0.229 3.771 8 O -0.502 6.502 9 N -0.215 5.215 10 C -0.463 4.463 11 H 0.079 0.921 12 C -0.209 4.209 13 N -0.565 5.565 14 Si 0.781 3.219 15 H -0.181 1.181 16 H -0.197 1.197 17 H -0.154 1.154 18 C -0.159 4.159 19 C -0.045 4.045 20 C -0.069 4.069 21 C -0.104 4.104 22 C -0.141 4.141 23 C -0.113 4.113 24 C -0.147 4.147 25 C -0.116 4.116 26 N -0.058 5.058 27 O -0.227 6.227 28 H 0.089 0.911 29 H 0.120 0.880 30 H 0.101 0.899 31 H 0.252 0.748 32 H 0.133 0.867 33 H 0.127 0.873 34 H 0.229 0.771 35 H 0.091 0.909 36 H 0.130 0.870 37 H 0.163 0.837 38 H 0.167 0.833 39 H 0.176 0.824 40 H 0.172 0.828 41 H 0.164 0.836 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.364 -23.519 24.562 34.172 hybrid contribution 0.205 1.425 -0.279 1.466 sum -3.159 -22.094 24.283 32.982 Atomic orbital electron populations 1.22130 0.89046 1.04743 1.04985 1.23256 0.98026 0.89770 0.88357 1.20066 0.77553 0.87068 0.83286 1.90709 1.50936 1.69716 1.31595 1.45790 1.64131 1.14797 1.10473 1.21015 1.02729 0.84078 0.93382 1.20512 0.82710 0.82650 0.91240 1.90557 1.53890 1.58164 1.47556 1.41893 1.58212 1.13420 1.07959 1.19025 1.43403 0.99669 0.84172 0.92102 1.26113 0.96417 0.98016 1.00347 1.69780 1.45954 1.19123 1.21609 0.85411 0.80005 0.78002 0.78478 1.18091 1.19703 1.15362 1.22912 1.05664 0.88273 0.99049 1.24727 0.92427 0.95649 0.91679 1.17928 1.06899 0.88651 0.93406 1.21551 0.96910 1.00601 0.91297 1.21503 0.99214 0.91640 1.01760 1.21787 0.95871 0.99507 0.94182 1.21406 1.00072 0.98176 0.95068 1.21462 0.97357 0.92264 1.00480 1.78495 1.15949 0.96968 1.14371 1.91337 1.83500 1.16139 1.31761 0.91084 0.88021 0.89851 0.74835 0.86717 0.87345 0.77095 0.90853 0.86980 0.83728 0.83300 0.82427 0.82796 0.83638 0.86256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 8.95 71.98 0.64 -2.32 16 2 C 0.05 1.22 1.23 -10.95 -0.01 1.21 16 3 C 0.54 15.84 6.75 87.66 0.59 16.43 16 4 O -0.55 -17.36 16.14 -3.05 -0.05 -17.41 16 5 N -0.70 -23.12 5.46 -466.79 -2.55 -25.67 16 6 C 0.12 3.82 6.15 85.63 0.53 4.35 16 7 C 0.44 19.81 7.85 87.66 0.69 20.50 16 8 O -0.62 -33.29 15.24 -3.07 -0.05 -33.34 16 9 N -0.57 -26.79 5.09 -306.97 -1.56 -28.36 16 10 C -0.33 -19.26 10.16 84.04 0.85 -18.40 16 11 H 0.06 4.17 7.39 -2.91 -0.02 4.15 16 12 C -0.01 -0.49 5.50 84.93 0.47 -0.02 16 13 N -0.93 -54.88 13.96 21.66 0.30 -54.58 16 14 Si 0.96 38.14 27.74 68.60 1.90 40.04 16 15 H -0.26 -9.70 7.11 99.48 0.71 -9.00 16 16 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 17 H -0.23 -7.70 6.52 99.48 0.65 -7.06 16 18 C -0.12 -2.28 5.03 30.79 0.15 -2.12 16 19 C 0.14 3.03 7.16 45.80 0.33 3.36 16 20 C -0.07 -1.12 5.87 -20.13 -0.12 -1.24 16 21 C -0.08 -0.90 9.61 22.54 0.22 -0.68 16 22 C -0.12 -0.92 10.03 22.23 0.22 -0.69 16 23 C -0.09 -0.71 10.04 22.33 0.22 -0.49 16 24 C -0.13 -1.40 10.03 22.23 0.22 -1.18 16 25 C -0.10 -1.55 9.69 22.54 0.22 -1.33 16 26 N -0.31 -8.76 12.12 -42.15 -0.51 -9.27 16 27 O -0.21 -6.51 11.50 -38.33 -0.44 -6.95 16 28 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 31 H 0.41 14.99 7.08 -92.71 -0.66 14.34 16 32 H 0.12 3.27 8.14 -2.39 -0.02 3.25 16 33 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 34 H 0.39 15.16 5.76 -92.71 -0.53 14.63 16 35 H 0.28 15.24 8.31 -92.72 -0.77 14.47 16 36 H 0.11 2.25 7.55 -2.39 -0.02 2.23 16 37 H 0.14 1.74 7.74 -2.39 -0.02 1.72 16 38 H 0.15 0.99 7.38 -2.91 -0.02 0.97 16 39 H 0.16 0.29 8.06 -2.91 -0.02 0.27 16 40 H 0.15 0.30 8.06 -2.91 -0.02 0.27 16 41 H 0.15 0.99 8.06 -2.91 -0.02 0.97 16 42 H 0.12 2.18 7.84 -2.91 -0.02 2.15 16 Total: -1.00 -79.22 365.94 2.11 -77.11 By element: Atomic # 1 Polarization: 41.22 SS G_CDS: -0.17 Total: 41.05 kcal Atomic # 6 Polarization: 12.14 SS G_CDS: 5.23 Total: 17.37 kcal Atomic # 7 Polarization: -113.56 SS G_CDS: -4.32 Total: -117.88 kcal Atomic # 8 Polarization: -57.16 SS G_CDS: -0.54 Total: -57.70 kcal Atomic # 14 Polarization: 38.14 SS G_CDS: 1.90 Total: 40.04 kcal Total: -79.22 2.11 -77.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857258024.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.429 kcal (2) G-P(sol) polarization free energy of solvation -79.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds