Wall clock time and date at job start Tue Mar 31 2020 16:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50693 * 110.85923 * 2 1 4 4 O 1.21284 * 119.99855 * 264.29598 * 3 2 1 5 5 N 1.34785 * 120.00386 * 84.30137 * 3 2 1 6 6 C 1.46494 * 120.00175 * 179.97438 * 5 3 2 7 7 C 1.50699 * 109.47029 * 179.97438 * 6 5 3 8 8 O 1.21286 * 119.99862 * 0.02562 * 7 6 5 9 9 N 1.34782 * 119.99934 * 180.02562 * 7 6 5 10 10 C 1.37099 * 119.99757 * 180.02562 * 9 7 6 11 11 H 1.07996 * 120.00191 * 359.97438 * 10 9 7 12 12 C 1.38946 * 119.99722 * 180.02562 * 10 9 7 13 13 N 1.31415 * 120.00278 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00156 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47070 * 89.99768 * 14 12 10 16 16 H 1.48494 * 109.47193 * 209.99842 * 14 12 10 17 17 H 1.48500 * 109.46756 * 330.00139 * 14 12 10 18 18 C 1.54727 * 110.97200 * 236.19738 * 2 1 3 19 19 C 1.51687 * 102.55332 * 266.10936 * 18 2 1 20 20 C 1.47648 * 125.86790 * 164.60800 * 19 18 2 21 21 C 1.39609 * 120.14850 * 359.72877 * 20 19 18 22 22 C 1.37957 * 119.84612 * 179.67816 * 21 20 19 23 23 C 1.38352 * 120.14946 * 0.61458 * 22 21 20 24 24 C 1.38358 * 120.30262 * 359.68446 * 23 22 21 25 25 C 1.37956 * 120.14875 * 359.97438 * 24 23 22 26 26 N 1.29077 * 108.26801 * 344.61127 * 19 18 2 27 27 O 1.41489 * 112.88417 * 359.66989 * 26 19 18 28 28 H 1.09001 * 109.47002 * 60.70026 * 1 2 3 29 29 H 1.08993 * 109.46955 * 180.70463 * 1 2 3 30 30 H 1.09000 * 109.47050 * 300.70292 * 1 2 3 31 31 H 0.97000 * 119.99259 * 359.97438 * 5 3 2 32 32 H 1.08995 * 109.47502 * 299.99919 * 6 5 3 33 33 H 1.09009 * 109.46940 * 59.99608 * 6 5 3 34 34 H 0.97002 * 119.99897 * 0.02562 * 9 7 6 35 35 H 0.96997 * 120.00107 * 179.97438 * 13 12 10 36 36 H 1.09003 * 110.79405 * 24.37831 * 18 2 1 37 37 H 1.09002 * 110.79401 * 147.84445 * 18 2 1 38 38 H 1.08001 * 120.07544 * 359.97438 * 21 20 19 39 39 H 1.08001 * 119.92322 * 180.29594 * 22 21 20 40 40 H 1.07998 * 119.84982 * 179.69691 * 23 22 21 41 41 H 1.07997 * 119.92309 * 180.02562 * 24 23 22 42 42 H 1.08001 * 120.07701 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0666 1.4082 0.0000 4 8 2.3801 1.9376 -1.0452 5 7 2.1983 2.0793 1.1615 6 6 2.7205 3.4480 1.1615 7 6 2.7668 3.9679 2.5752 8 8 2.4002 3.2642 3.4924 9 7 3.2157 5.2150 2.8202 10 6 3.2583 5.6878 4.1063 11 1 2.9319 5.0612 4.9231 12 6 3.7205 6.9735 4.3589 13 7 4.1172 7.7362 3.3649 14 14 3.7780 7.6181 6.1112 15 1 5.0952 7.2934 6.7151 16 1 3.5864 9.0906 6.1035 17 1 2.6980 6.9825 6.9080 18 6 2.0838 -0.8038 -1.2005 19 6 2.2957 -2.1825 -0.6047 20 6 2.5077 -3.4303 -1.3650 21 6 2.5201 -3.4074 -2.7608 22 6 2.7255 -4.5758 -3.4649 23 6 2.9061 -5.7706 -2.7910 24 6 2.8887 -5.8015 -1.4079 25 6 2.6914 -4.6393 -0.6913 26 7 2.2586 -2.0776 0.6813 27 8 2.0462 -0.7490 1.1190 28 1 -0.3633 0.5029 -0.8962 29 1 -0.3633 -1.0275 0.0126 30 1 -0.3633 0.5247 0.8836 31 1 1.9473 1.6558 1.9973 32 1 3.7251 3.4536 0.7388 33 1 2.0703 4.0849 0.5615 34 1 3.5085 5.7779 2.0865 35 1 4.4396 8.6339 3.5412 36 1 1.3557 -0.8401 -2.0108 37 1 3.0279 -0.3824 -1.5459 38 1 2.3741 -2.4762 -3.2881 39 1 2.7401 -4.5587 -4.5447 40 1 3.0616 -6.6832 -3.3471 41 1 3.0308 -6.7374 -0.8881 42 1 2.6785 -4.6646 0.3884 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857258025.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:15 Heat of formation + Delta-G solvation = -26.942147 kcal Electronic energy + Delta-G solvation = -26867.863058 eV Core-core repulsion = 22814.863981 eV Total energy + Delta-G solvation = -4052.999076 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.14170 -39.59974 -38.90763 -38.04065 -34.63137 -34.14099 -33.64243 -32.65489 -31.43182 -31.37654 -30.51262 -27.92075 -27.67937 -24.82404 -23.96933 -23.39286 -22.48917 -20.58590 -19.92553 -19.57546 -18.30871 -17.90941 -17.05304 -16.34707 -16.04903 -15.83827 -15.65078 -15.31679 -15.09149 -14.93554 -14.55920 -14.23648 -14.15016 -13.91133 -13.89021 -13.78860 -13.43391 -13.19641 -12.68634 -12.60075 -12.45287 -12.21971 -11.98451 -11.82071 -11.75440 -11.65780 -11.63206 -11.12601 -10.99534 -10.46119 -10.44327 -10.31611 -9.78720 -9.64160 -9.42081 -8.94491 -8.91537 -8.64849 -8.10792 -6.51984 -3.93927 0.30676 0.94537 1.88586 2.40419 2.72405 3.03429 3.11935 3.22559 3.28501 3.39806 3.72362 3.75993 3.96523 4.10641 4.11616 4.49335 4.51404 4.53649 4.65279 4.72269 4.84202 4.93233 5.06577 5.10073 5.16119 5.21886 5.28323 5.37709 5.47705 5.53947 5.59484 5.78459 5.82176 5.89076 5.97953 5.99715 6.03336 6.04144 6.45101 6.52806 7.02106 7.45994 7.63391 7.90743 8.20281 8.44460 9.04171 9.37962 9.86019 10.64864 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.030492 B = 0.001977 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.038450 B =14156.222291 C =14453.815060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.054 3.946 3 C 0.532 3.468 4 O -0.538 6.538 5 N -0.688 5.688 6 C 0.106 3.894 7 C 0.427 3.573 8 O -0.593 6.593 9 N -0.549 5.549 10 C -0.305 4.305 11 H 0.106 0.894 12 C 0.025 3.975 13 N -0.895 5.895 14 Si 0.934 3.066 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.268 1.268 18 C -0.124 4.124 19 C 0.123 3.877 20 C -0.040 4.040 21 C -0.085 4.085 22 C -0.123 4.123 23 C -0.102 4.102 24 C -0.123 4.123 25 C -0.079 4.079 26 N -0.277 5.277 27 O -0.175 6.175 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.418 0.582 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.396 0.604 35 H 0.274 0.726 36 H 0.112 0.888 37 H 0.115 0.885 38 H 0.132 0.868 39 H 0.130 0.870 40 H 0.126 0.874 41 H 0.129 0.871 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.487 -22.986 -15.530 28.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.010 3.990 3 C 0.314 3.686 4 O -0.416 6.416 5 N -0.341 5.341 6 C -0.021 4.021 7 C 0.213 3.787 8 O -0.479 6.479 9 N -0.183 5.183 10 C -0.434 4.434 11 H 0.124 0.876 12 C -0.177 4.177 13 N -0.535 5.535 14 Si 0.760 3.240 15 H -0.203 1.203 16 H -0.208 1.208 17 H -0.193 1.193 18 C -0.164 4.164 19 C -0.066 4.066 20 C -0.041 4.041 21 C -0.106 4.106 22 C -0.141 4.141 23 C -0.120 4.120 24 C -0.141 4.141 25 C -0.099 4.099 26 N -0.017 5.017 27 O -0.195 6.195 28 H 0.100 0.900 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.257 0.743 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.230 0.770 35 H 0.084 0.916 36 H 0.130 0.870 37 H 0.133 0.867 38 H 0.150 0.850 39 H 0.148 0.852 40 H 0.144 0.856 41 H 0.147 0.853 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.330 -23.186 -14.402 27.636 hybrid contribution 0.070 1.169 0.064 1.173 sum -4.260 -22.017 -14.338 26.617 Atomic orbital electron populations 1.22116 0.90792 1.03918 1.04509 1.23138 0.96796 0.91475 0.87603 1.19662 0.78473 0.86212 0.84249 1.90728 1.50418 1.69023 1.31473 1.45696 1.63410 1.15107 1.09934 1.21048 1.00598 0.82978 0.97522 1.19688 0.85707 0.84007 0.89347 1.90522 1.54346 1.57651 1.45406 1.41785 1.54995 1.11769 1.09793 1.19742 1.40892 0.98080 0.84684 0.87624 1.25329 0.96503 0.95993 0.99906 1.69614 1.42439 1.09852 1.31602 0.85801 0.78929 0.77748 0.81495 1.20251 1.20796 1.19295 1.22834 1.05064 0.89238 0.99236 1.24304 0.95278 0.94696 0.92338 1.17801 1.04410 0.89453 0.92453 1.21294 0.97795 0.99170 0.92298 1.21111 1.00389 0.92253 1.00315 1.21377 0.97881 0.98246 0.94543 1.21153 1.00445 0.98251 0.94272 1.21403 0.96408 0.91315 1.00789 1.78467 1.12429 0.97990 1.12778 1.91384 1.82797 1.14981 1.30335 0.89967 0.90851 0.90108 0.74277 0.89574 0.89497 0.77046 0.91591 0.87012 0.86652 0.85042 0.85221 0.85569 0.85303 0.84849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 8.95 37.16 0.33 -1.34 16 2 C 0.05 0.71 1.23 -90.86 -0.11 0.60 16 3 C 0.53 8.53 6.75 -10.99 -0.07 8.46 16 4 O -0.54 -9.54 16.14 5.55 0.09 -9.45 16 5 N -0.69 -12.08 5.46 -61.47 -0.34 -12.41 16 6 C 0.11 1.97 6.15 -5.20 -0.03 1.94 16 7 C 0.43 9.95 7.85 -10.98 -0.09 9.86 16 8 O -0.59 -15.58 15.24 5.55 0.08 -15.49 16 9 N -0.55 -13.69 5.29 -10.97 -0.06 -13.75 16 10 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 11 H 0.11 3.02 7.16 -52.49 -0.38 2.65 16 12 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 13 N -0.89 -23.94 13.05 55.50 0.72 -23.21 16 14 Si 0.93 20.70 29.55 -169.99 -5.02 15.67 16 15 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 16 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 17 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 18 C -0.12 -1.34 5.03 -26.49 -0.13 -1.47 16 19 C 0.12 1.37 7.16 -79.42 -0.57 0.80 16 20 C -0.04 -0.36 5.87 -105.03 -0.62 -0.98 16 21 C -0.09 -0.60 9.61 -39.17 -0.38 -0.98 16 22 C -0.12 -0.71 10.03 -39.64 -0.40 -1.10 16 23 C -0.10 -0.57 10.04 -39.50 -0.40 -0.96 16 24 C -0.12 -0.80 10.03 -39.64 -0.40 -1.20 16 25 C -0.08 -0.67 9.69 -39.17 -0.38 -1.05 16 26 N -0.28 -3.82 12.12 35.30 0.43 -3.39 16 27 O -0.18 -2.70 11.50 -11.42 -0.13 -2.83 16 28 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.42 7.64 7.08 -40.82 -0.29 7.35 16 32 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 33 H 0.09 1.50 8.14 -51.92 -0.42 1.08 16 34 H 0.40 9.44 7.90 -40.82 -0.32 9.12 16 35 H 0.27 6.92 8.31 -40.82 -0.34 6.59 16 36 H 0.11 0.90 7.72 -51.93 -0.40 0.50 16 37 H 0.12 1.31 7.55 -51.93 -0.39 0.92 16 38 H 0.13 0.71 7.36 -52.49 -0.39 0.32 16 39 H 0.13 0.46 8.06 -52.49 -0.42 0.03 16 40 H 0.13 0.42 8.06 -52.49 -0.42 -0.01 16 41 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 42 H 0.13 1.16 7.84 -52.49 -0.41 0.75 16 LS Contribution 369.04 15.07 5.56 5.56 Total: -1.00 -32.69 369.04 -7.23 -39.92 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -5.09 Total: 14.72 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: -3.48 Total: 4.66 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: 0.76 Total: -52.76 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: 0.04 Total: -27.77 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.69 -7.23 -39.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857258025.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.981 kcal (2) G-P(sol) polarization free energy of solvation -32.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds