Wall clock time and date at job start Tue Mar 31 2020 16:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50693 * 110.85923 * 2 1 4 4 O 1.21284 * 119.99855 * 264.29598 * 3 2 1 5 5 N 1.34785 * 120.00386 * 84.30137 * 3 2 1 6 6 C 1.46494 * 120.00175 * 179.97438 * 5 3 2 7 7 C 1.50699 * 109.47029 * 179.97438 * 6 5 3 8 8 O 1.21286 * 119.99862 * 0.02562 * 7 6 5 9 9 N 1.34782 * 119.99934 * 180.02562 * 7 6 5 10 10 C 1.37099 * 119.99757 * 180.02562 * 9 7 6 11 11 H 1.07996 * 120.00191 * 359.97438 * 10 9 7 12 12 C 1.38946 * 119.99722 * 180.02562 * 10 9 7 13 13 N 1.31415 * 120.00278 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00156 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47070 * 89.99768 * 14 12 10 16 16 H 1.48494 * 109.47193 * 209.99842 * 14 12 10 17 17 H 1.48500 * 109.46756 * 330.00139 * 14 12 10 18 18 C 1.54727 * 110.97200 * 236.19738 * 2 1 3 19 19 C 1.51687 * 102.55332 * 266.10936 * 18 2 1 20 20 C 1.47648 * 125.86790 * 164.60800 * 19 18 2 21 21 C 1.39609 * 120.14850 * 359.72877 * 20 19 18 22 22 C 1.37957 * 119.84612 * 179.67816 * 21 20 19 23 23 C 1.38352 * 120.14946 * 0.61458 * 22 21 20 24 24 C 1.38358 * 120.30262 * 359.68446 * 23 22 21 25 25 C 1.37956 * 120.14875 * 359.97438 * 24 23 22 26 26 N 1.29077 * 108.26801 * 344.61127 * 19 18 2 27 27 O 1.41489 * 112.88417 * 359.66989 * 26 19 18 28 28 H 1.09001 * 109.47002 * 60.70026 * 1 2 3 29 29 H 1.08993 * 109.46955 * 180.70463 * 1 2 3 30 30 H 1.09000 * 109.47050 * 300.70292 * 1 2 3 31 31 H 0.97000 * 119.99259 * 359.97438 * 5 3 2 32 32 H 1.08995 * 109.47502 * 299.99919 * 6 5 3 33 33 H 1.09009 * 109.46940 * 59.99608 * 6 5 3 34 34 H 0.97002 * 119.99897 * 0.02562 * 9 7 6 35 35 H 0.96997 * 120.00107 * 179.97438 * 13 12 10 36 36 H 1.09003 * 110.79405 * 24.37831 * 18 2 1 37 37 H 1.09002 * 110.79401 * 147.84445 * 18 2 1 38 38 H 1.08001 * 120.07544 * 359.97438 * 21 20 19 39 39 H 1.08001 * 119.92322 * 180.29594 * 22 21 20 40 40 H 1.07998 * 119.84982 * 179.69691 * 23 22 21 41 41 H 1.07997 * 119.92309 * 180.02562 * 24 23 22 42 42 H 1.08001 * 120.07701 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0666 1.4082 0.0000 4 8 2.3801 1.9376 -1.0452 5 7 2.1983 2.0793 1.1615 6 6 2.7205 3.4480 1.1615 7 6 2.7668 3.9679 2.5752 8 8 2.4002 3.2642 3.4924 9 7 3.2157 5.2150 2.8202 10 6 3.2583 5.6878 4.1063 11 1 2.9319 5.0612 4.9231 12 6 3.7205 6.9735 4.3589 13 7 4.1172 7.7362 3.3649 14 14 3.7780 7.6181 6.1112 15 1 5.0952 7.2934 6.7151 16 1 3.5864 9.0906 6.1035 17 1 2.6980 6.9825 6.9080 18 6 2.0838 -0.8038 -1.2005 19 6 2.2957 -2.1825 -0.6047 20 6 2.5077 -3.4303 -1.3650 21 6 2.5201 -3.4074 -2.7608 22 6 2.7255 -4.5758 -3.4649 23 6 2.9061 -5.7706 -2.7910 24 6 2.8887 -5.8015 -1.4079 25 6 2.6914 -4.6393 -0.6913 26 7 2.2586 -2.0776 0.6813 27 8 2.0462 -0.7490 1.1190 28 1 -0.3633 0.5029 -0.8962 29 1 -0.3633 -1.0275 0.0126 30 1 -0.3633 0.5247 0.8836 31 1 1.9473 1.6558 1.9973 32 1 3.7251 3.4536 0.7388 33 1 2.0703 4.0849 0.5615 34 1 3.5085 5.7779 2.0865 35 1 4.4396 8.6339 3.5412 36 1 1.3557 -0.8401 -2.0108 37 1 3.0279 -0.3824 -1.5459 38 1 2.3741 -2.4762 -3.2881 39 1 2.7401 -4.5587 -4.5447 40 1 3.0616 -6.6832 -3.3471 41 1 3.0308 -6.7374 -0.8881 42 1 2.6785 -4.6646 0.3884 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000857258025.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:14 Heat of formation + Delta-G solvation = -49.733984 kcal Electronic energy + Delta-G solvation = -26868.851386 eV Core-core repulsion = 22814.863981 eV Total energy + Delta-G solvation = -4053.987404 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.17345 -40.71791 -40.01122 -39.50309 -36.33770 -35.54559 -34.84557 -33.63342 -33.38982 -31.93510 -31.17374 -29.50355 -28.55593 -26.66925 -24.69294 -24.38667 -23.18323 -21.57353 -21.38755 -20.91083 -20.11461 -19.22818 -17.80915 -17.58143 -17.20667 -17.08792 -16.86045 -16.55390 -16.50907 -16.00592 -15.88623 -15.57215 -15.40675 -15.10923 -14.89112 -14.43619 -14.33773 -14.16013 -14.03722 -13.63344 -13.57544 -13.47381 -13.43222 -13.30337 -12.93366 -12.68073 -12.48637 -12.37012 -12.20929 -12.14097 -11.77442 -11.60415 -11.41414 -10.88865 -10.61449 -10.35918 -10.12215 -9.91567 -9.60872 -8.53727 -6.04064 -0.34690 0.45421 1.16127 1.17347 1.34384 1.41089 1.53433 1.68616 1.83724 1.86833 2.27617 2.86130 2.87471 3.04743 3.12803 3.13539 3.18401 3.49144 3.62755 4.02754 4.05460 4.16329 4.19460 4.32280 4.33366 4.35398 4.38996 4.46575 4.52149 4.55558 4.58016 4.73096 4.94719 4.97572 5.07880 5.10819 5.35854 5.42351 5.50408 5.56382 5.88166 5.98223 6.09538 6.28696 6.45376 6.83659 7.00834 7.39824 7.91186 8.63034 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.030492 B = 0.001977 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.038450 B =14156.222291 C =14453.815060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.051 3.949 3 C 0.534 3.466 4 O -0.554 6.554 5 N -0.696 5.696 6 C 0.119 3.881 7 C 0.430 3.570 8 O -0.625 6.625 9 N -0.557 5.557 10 C -0.339 4.339 11 H 0.084 0.916 12 C -0.009 4.009 13 N -0.914 5.914 14 Si 0.997 3.003 15 H -0.271 1.271 16 H -0.269 1.269 17 H -0.271 1.271 18 C -0.121 4.121 19 C 0.145 3.855 20 C -0.067 4.067 21 C -0.084 4.084 22 C -0.124 4.124 23 C -0.094 4.094 24 C -0.129 4.129 25 C -0.095 4.095 26 N -0.313 5.313 27 O -0.210 6.210 28 H 0.100 0.900 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.414 0.586 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.400 0.600 35 H 0.281 0.719 36 H 0.145 0.855 37 H 0.110 0.890 38 H 0.148 0.852 39 H 0.158 0.842 40 H 0.155 0.845 41 H 0.147 0.853 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.649 -24.190 -17.752 30.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.008 3.992 3 C 0.318 3.682 4 O -0.433 6.433 5 N -0.349 5.349 6 C -0.009 4.009 7 C 0.217 3.783 8 O -0.513 6.513 9 N -0.192 5.192 10 C -0.468 4.468 11 H 0.102 0.898 12 C -0.210 4.210 13 N -0.554 5.554 14 Si 0.820 3.180 15 H -0.196 1.196 16 H -0.194 1.194 17 H -0.196 1.196 18 C -0.160 4.160 19 C -0.044 4.044 20 C -0.069 4.069 21 C -0.104 4.104 22 C -0.141 4.141 23 C -0.113 4.113 24 C -0.147 4.147 25 C -0.115 4.115 26 N -0.057 5.057 27 O -0.227 6.227 28 H 0.119 0.881 29 H 0.103 0.897 30 H 0.090 0.910 31 H 0.252 0.748 32 H 0.116 0.884 33 H 0.123 0.877 34 H 0.234 0.766 35 H 0.090 0.910 36 H 0.163 0.837 37 H 0.129 0.871 38 H 0.166 0.834 39 H 0.175 0.825 40 H 0.172 0.828 41 H 0.164 0.836 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -4.491 -24.375 -16.651 29.859 hybrid contribution 0.154 1.389 0.613 1.526 sum -4.337 -22.986 -16.039 28.362 Atomic orbital electron populations 1.22128 0.88960 1.04796 1.04972 1.23231 0.98054 0.89594 0.88369 1.20142 0.77589 0.87176 0.83304 1.90709 1.51038 1.69816 1.31734 1.45768 1.63950 1.14724 1.10428 1.20899 1.01853 0.83919 0.94191 1.20414 0.83845 0.83142 0.90946 1.90498 1.55267 1.58359 1.47198 1.41817 1.55628 1.12464 1.09292 1.19729 1.42933 0.98871 0.85284 0.89759 1.26126 0.95460 0.95593 1.03842 1.69672 1.42254 1.10232 1.33215 0.84866 0.78855 0.77554 0.76691 1.19601 1.19388 1.19587 1.22892 1.05612 0.88380 0.99098 1.24697 0.92407 0.95601 0.91700 1.17923 1.06933 0.88645 0.93373 1.21550 0.96941 1.00603 0.91328 1.21497 0.99204 0.91671 1.01755 1.21787 0.95856 0.99461 0.94209 1.21410 1.00043 0.98188 0.95040 1.21462 0.97332 0.92196 1.00505 1.78502 1.15961 0.96925 1.14295 1.91348 1.83525 1.16173 1.31663 0.88141 0.89686 0.91034 0.74787 0.88418 0.87719 0.76572 0.90982 0.83733 0.87147 0.83403 0.82456 0.82756 0.83561 0.86183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 8.95 71.98 0.64 -2.48 16 2 C 0.05 1.33 1.23 -10.95 -0.01 1.32 16 3 C 0.53 17.02 6.75 87.65 0.59 17.61 16 4 O -0.55 -19.14 16.14 -3.04 -0.05 -19.19 16 5 N -0.70 -24.75 5.46 -466.79 -2.55 -27.30 16 6 C 0.12 4.43 6.15 85.63 0.53 4.96 16 7 C 0.43 20.47 7.85 87.66 0.69 21.15 16 8 O -0.63 -33.94 15.24 -3.05 -0.05 -33.99 16 9 N -0.56 -28.40 5.29 -306.99 -1.62 -30.02 16 10 C -0.34 -19.00 9.68 84.04 0.81 -18.19 16 11 H 0.08 5.01 7.16 -2.91 -0.02 4.99 16 12 C -0.01 -0.49 5.50 84.92 0.47 -0.02 16 13 N -0.91 -48.70 13.05 21.66 0.28 -48.42 16 14 Si 1.00 42.33 29.55 68.60 2.03 44.36 16 15 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 16 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 17 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 18 C -0.12 -2.46 5.03 30.75 0.15 -2.31 16 19 C 0.14 3.17 7.16 45.77 0.33 3.50 16 20 C -0.07 -1.16 5.87 -20.13 -0.12 -1.28 16 21 C -0.08 -0.97 9.61 22.53 0.22 -0.75 16 22 C -0.12 -0.99 10.03 22.23 0.22 -0.77 16 23 C -0.09 -0.74 10.04 22.33 0.22 -0.52 16 24 C -0.13 -1.43 10.03 22.23 0.22 -1.21 16 25 C -0.09 -1.57 9.69 22.53 0.22 -1.35 16 26 N -0.31 -8.93 12.12 -42.23 -0.51 -9.44 16 27 O -0.21 -6.70 11.50 -38.54 -0.44 -7.14 16 28 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.41 15.69 7.08 -92.71 -0.66 15.04 16 32 H 0.10 3.44 8.14 -2.39 -0.02 3.42 16 33 H 0.10 3.56 8.14 -2.38 -0.02 3.54 16 34 H 0.40 19.39 7.90 -92.71 -0.73 18.66 16 35 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 36 H 0.14 1.93 7.72 -2.39 -0.02 1.91 16 37 H 0.11 2.41 7.55 -2.39 -0.02 2.39 16 38 H 0.15 1.13 7.36 -2.91 -0.02 1.11 16 39 H 0.16 0.39 8.06 -2.91 -0.02 0.37 16 40 H 0.15 0.34 8.06 -2.91 -0.02 0.32 16 41 H 0.15 1.01 8.06 -2.91 -0.02 0.99 16 42 H 0.12 2.21 7.84 -2.91 -0.02 2.19 16 Total: -1.00 -71.97 369.04 1.97 -70.01 By element: Atomic # 1 Polarization: 41.77 SS G_CDS: -0.31 Total: 41.46 kcal Atomic # 6 Polarization: 14.48 SS G_CDS: 5.19 Total: 19.67 kcal Atomic # 7 Polarization: -110.78 SS G_CDS: -4.40 Total: -115.18 kcal Atomic # 8 Polarization: -59.78 SS G_CDS: -0.54 Total: -60.32 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -71.97 1.97 -70.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857258025.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.272 kcal (2) G-P(sol) polarization free energy of solvation -71.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds