Wall clock time and date at job start Tue Mar 31 2020 16:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34229 * 117.00034 * 2 1 4 4 O 1.20825 * 119.99840 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99888 * 179.97438 * 3 2 1 6 6 C 1.52999 * 109.46849 * 180.02562 * 5 3 2 7 7 N 1.46509 * 109.47003 * 179.97438 * 6 5 3 8 8 C 1.36932 * 119.99615 * 96.36141 * 7 6 5 9 9 H 1.07998 * 120.00125 * 219.09205 * 8 7 6 10 10 C 1.38923 * 120.00001 * 39.09700 * 8 7 6 11 11 N 1.31456 * 119.99886 * 17.00340 * 10 8 7 12 12 Si 1.86803 * 119.99845 * 197.00052 * 10 8 7 13 13 H 1.48498 * 109.46867 * 60.00303 * 12 10 8 14 14 H 1.48503 * 109.47106 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47118 * 300.00239 * 12 10 8 16 16 C 1.34770 * 119.99997 * 276.63867 * 7 6 5 17 17 O 1.21825 * 120.00083 * 4.52560 * 16 7 6 18 18 C 1.46165 * 119.99735 * 184.53176 * 16 7 6 19 19 N 1.34897 * 126.51048 * 359.13674 * 18 16 7 20 20 C 1.30183 * 109.74513 * 180.02562 * 19 18 16 21 21 C 1.50707 * 125.07891 * 179.97438 * 20 19 18 22 22 N 1.36282 * 109.84802 * 0.02562 * 20 19 18 23 23 C 1.36519 * 132.77833 * 180.02562 * 22 20 19 24 24 C 1.35078 * 120.59333 * 179.97438 * 23 22 20 25 25 C 1.40350 * 120.43120 * 359.97438 * 24 23 22 26 26 C 1.36414 * 119.54934 * 0.02562 * 25 24 23 27 27 C 1.37282 * 107.18622 * 359.72778 * 22 20 19 28 28 H 1.08991 * 109.47037 * 60.00218 * 1 2 3 29 29 H 1.09002 * 109.47171 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47152 * 300.00039 * 1 2 3 31 31 H 1.08998 * 109.47279 * 60.00084 * 5 3 2 32 32 H 1.09004 * 109.46998 * 299.99836 * 5 3 2 33 33 H 1.08996 * 109.47479 * 60.00390 * 6 5 3 34 34 H 1.08998 * 109.47275 * 300.00026 * 6 5 3 35 35 H 0.97008 * 119.99498 * 179.97438 * 11 10 8 36 36 H 1.08997 * 109.47080 * 90.02546 * 21 20 19 37 37 H 1.08994 * 109.47131 * 210.02954 * 21 20 19 38 38 H 1.09000 * 109.46559 * 330.02750 * 21 20 19 39 39 H 1.07999 * 119.70252 * 359.94828 * 23 22 20 40 40 H 1.07992 * 119.78410 * 180.02562 * 24 23 22 41 41 H 1.07999 * 120.22562 * 179.97438 * 25 24 23 42 42 H 1.08001 * 120.39424 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0001 2.7420 0.0011 7 7 5.4632 2.8187 0.0023 8 6 6.1409 2.9859 -1.1758 9 1 7.0685 2.4592 -1.3445 10 6 5.6353 3.8331 -2.1538 11 7 4.7137 4.7181 -1.8444 12 14 6.2650 3.7147 -3.9085 13 1 5.9977 2.3539 -4.4395 14 1 5.5714 4.7209 -4.7522 15 1 7.7267 3.9757 -3.9285 16 6 6.1422 2.7191 1.1621 17 8 5.5467 2.4831 2.1983 18 6 7.5932 2.8944 1.1768 19 7 8.3825 3.1422 0.1113 20 6 9.6226 3.2387 0.4955 21 6 10.7927 3.5103 -0.4146 22 7 9.7049 3.0563 1.8436 23 6 10.7537 3.0600 2.7174 24 6 10.5508 2.8475 4.0358 25 6 9.2564 2.6197 4.5283 26 6 8.1999 2.6135 3.6654 27 6 8.4290 2.8415 2.3024 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 3.9564 0.7805 -0.8891 32 1 3.9557 0.7809 0.8909 33 1 3.6101 3.2359 0.8910 34 1 3.6107 3.2364 -0.8889 35 1 4.3610 5.3099 -2.5273 36 1 10.9521 4.5859 -0.4904 37 1 11.6868 3.0382 -0.0076 38 1 10.5853 3.1031 -1.4042 39 1 11.7547 3.2340 2.3512 40 1 11.3900 2.8536 4.7156 41 1 9.0981 2.4497 5.5830 42 1 7.1981 2.4392 4.0295 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871342488.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:12:27 Heat of formation + Delta-G solvation = -18.085264 kcal Electronic energy + Delta-G solvation = -28429.019024 eV Core-core repulsion = 24376.404011 eV Total energy + Delta-G solvation = -4052.615013 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.32179 -39.98765 -38.35536 -37.02537 -36.10527 -34.82365 -33.12113 -31.83795 -31.18289 -30.69741 -29.60621 -27.54266 -26.40003 -24.90277 -24.04260 -23.45803 -21.97123 -20.72196 -20.17411 -19.12728 -17.69129 -17.21394 -16.60531 -16.16888 -16.11678 -16.01572 -15.69993 -15.43438 -15.17002 -14.49539 -14.30730 -14.01069 -13.55442 -13.46485 -13.29578 -12.95280 -12.90404 -12.52210 -12.33605 -12.14628 -11.96103 -11.92526 -11.58927 -11.41346 -11.24335 -11.13467 -10.95422 -10.73011 -10.48999 -10.33155 -10.20323 -10.01833 -9.95875 -9.42060 -8.99707 -8.92017 -8.55127 -7.47839 -6.94905 -6.24176 -3.88822 1.00829 1.45087 2.73285 2.88450 3.04609 3.14524 3.29997 3.31339 3.33103 3.61420 4.20890 4.55607 4.58992 4.66283 4.85570 4.95169 5.04624 5.18921 5.26724 5.28883 5.32089 5.35088 5.42191 5.59234 5.68430 5.70199 5.85906 5.90906 5.98676 6.04915 6.09812 6.23639 6.36395 6.39225 6.50561 6.77665 6.85560 6.89878 7.08406 7.40909 7.51693 7.74436 7.95140 8.24512 8.40260 8.61693 9.20773 9.55423 9.96107 10.78874 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.011012 B = 0.004385 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2542.089692 B = 6384.047108 C = 8470.212684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.367 6.367 3 C 0.467 3.533 4 O -0.505 6.505 5 C -0.126 4.126 6 C 0.132 3.868 7 N -0.415 5.415 8 C -0.310 4.310 9 H 0.114 0.886 10 C 0.039 3.961 11 N -0.864 5.864 12 Si 0.917 3.083 13 H -0.274 1.274 14 H -0.287 1.287 15 H -0.270 1.270 16 C 0.538 3.462 17 O -0.610 6.610 18 C 0.006 3.994 19 N -0.373 5.373 20 C 0.139 3.861 21 C -0.057 4.057 22 N -0.365 5.365 23 C 0.040 3.960 24 C -0.136 4.136 25 C -0.148 4.148 26 C -0.045 4.045 27 C 0.037 3.963 28 H 0.059 0.941 29 H 0.095 0.905 30 H 0.059 0.941 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.063 0.937 34 H 0.117 0.883 35 H 0.269 0.731 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.091 0.909 39 H 0.158 0.842 40 H 0.141 0.859 41 H 0.132 0.868 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.155 -6.047 5.410 11.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.284 6.284 3 C 0.310 3.690 4 O -0.392 6.392 5 C -0.165 4.165 6 C 0.008 3.992 7 N -0.130 5.130 8 C -0.438 4.438 9 H 0.132 0.868 10 C -0.166 4.166 11 N -0.501 5.501 12 Si 0.744 3.256 13 H -0.200 1.200 14 H -0.213 1.213 15 H -0.195 1.195 16 C 0.329 3.671 17 O -0.497 6.497 18 C -0.130 4.130 19 N -0.089 5.089 20 C -0.116 4.116 21 C -0.116 4.116 22 N -0.038 5.038 23 C -0.082 4.082 24 C -0.157 4.157 25 C -0.169 4.169 26 C -0.065 4.065 27 C -0.073 4.073 28 H 0.078 0.922 29 H 0.113 0.887 30 H 0.078 0.922 31 H 0.122 0.878 32 H 0.119 0.881 33 H 0.082 0.918 34 H 0.135 0.865 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.110 0.890 39 H 0.175 0.825 40 H 0.159 0.841 41 H 0.150 0.850 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 7.302 -5.577 4.827 10.379 hybrid contribution 0.468 0.143 -0.098 0.499 sum 7.771 -5.434 4.729 10.596 Atomic orbital electron populations 1.23157 0.77467 1.02960 1.02311 1.86543 1.22668 1.34480 1.84693 1.24083 0.92381 0.80851 0.71682 1.90650 1.67264 1.36209 1.45089 1.21923 0.85804 1.03383 1.05395 1.21196 0.81817 0.90805 1.05367 1.43313 1.04467 1.59756 1.05479 1.19940 1.07883 1.25185 0.90832 0.86838 1.25463 0.96730 0.93872 1.00551 1.69937 1.28435 1.17514 1.34177 0.86145 0.79294 0.77925 0.82218 1.19956 1.21251 1.19499 1.16815 0.84029 0.82572 0.83723 1.90646 1.69274 1.57117 1.32672 1.20776 0.94679 1.10946 0.86628 1.70758 0.98186 1.11561 1.28354 1.23760 0.96369 1.12038 0.79440 1.20075 0.91220 1.02460 0.97831 1.42915 1.06929 1.45541 1.08390 1.21494 0.91973 1.04661 0.90058 1.20726 0.98448 1.02796 0.93766 1.21022 0.92001 1.03699 1.00198 1.20786 1.01063 0.95455 0.89152 1.19287 0.84040 1.08866 0.95153 0.92186 0.88685 0.92208 0.87803 0.88053 0.91808 0.86523 0.92088 0.90645 0.91593 0.88993 0.82464 0.84100 0.84963 0.82705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.56 101.05 1.07 1.52 16 2 O -0.37 -6.17 10.57 -39.26 -0.41 -6.58 16 3 C 0.47 9.25 7.96 36.00 0.29 9.53 16 4 O -0.51 -11.27 15.73 -18.75 -0.29 -11.56 16 5 C -0.13 -2.61 6.08 -27.88 -0.17 -2.78 16 6 C 0.13 3.27 4.10 -4.04 -0.02 3.26 16 7 N -0.41 -10.81 2.53 -116.47 -0.29 -11.11 16 8 C -0.31 -8.11 7.83 -15.02 -0.12 -8.23 16 9 H 0.11 2.96 6.07 -52.49 -0.32 2.64 16 10 C 0.04 1.02 4.99 -17.46 -0.09 0.93 16 11 N -0.86 -23.81 11.39 55.50 0.63 -23.18 16 12 Si 0.92 20.27 29.59 -169.99 -5.03 15.24 16 13 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 14 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 15 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 16 C 0.54 13.91 7.53 -13.08 -0.10 13.81 16 17 O -0.61 -16.04 15.29 5.08 0.08 -15.97 16 18 C 0.01 0.15 6.78 -82.57 -0.56 -0.41 16 19 N -0.37 -8.40 8.01 -6.73 -0.05 -8.45 16 20 C 0.14 2.50 7.94 -154.53 -1.23 1.28 16 21 C -0.06 -0.73 10.32 36.01 0.37 -0.35 16 22 N -0.37 -6.19 2.94 -57.89 -0.17 -6.36 16 23 C 0.04 0.49 10.77 -16.59 -0.18 0.31 16 24 C -0.14 -1.50 9.98 -39.91 -0.40 -1.90 16 25 C -0.15 -1.91 10.09 -39.45 -0.40 -2.30 16 26 C -0.04 -0.76 9.73 -39.55 -0.38 -1.15 16 27 C 0.04 0.73 6.72 -83.96 -0.56 0.17 16 28 H 0.06 0.76 8.13 -51.93 -0.42 0.33 16 29 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 31 H 0.10 2.03 8.14 -51.93 -0.42 1.61 16 32 H 0.10 2.07 7.94 -51.93 -0.41 1.65 16 33 H 0.06 1.68 7.65 -51.93 -0.40 1.28 16 34 H 0.12 3.12 5.52 -51.93 -0.29 2.84 16 35 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.62 7.98 -51.93 -0.41 0.20 16 38 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.16 1.31 7.94 -52.49 -0.42 0.90 16 40 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 41 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 42 H 0.16 2.74 7.17 -52.49 -0.38 2.36 16 LS Contribution 362.26 15.07 5.46 5.46 Total: -1.00 -34.04 362.26 -7.70 -41.74 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -5.14 Total: 7.08 kcal Atomic # 6 Polarization: 16.16 SS G_CDS: -2.48 Total: 13.68 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: 0.11 Total: -49.09 kcal Atomic # 8 Polarization: -33.48 SS G_CDS: -0.63 Total: -34.11 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.03 Total: 15.24 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.04 -7.70 -41.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871342488.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.656 kcal (2) G-P(sol) polarization free energy of solvation -34.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds