Wall clock time and date at job start Tue Mar 31 2020 16:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34229 * 117.00034 * 2 1 4 4 O 1.20825 * 119.99840 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99888 * 179.97438 * 3 2 1 6 6 C 1.52999 * 109.46849 * 180.02562 * 5 3 2 7 7 N 1.46509 * 109.47003 * 179.97438 * 6 5 3 8 8 C 1.36932 * 119.99615 * 96.36141 * 7 6 5 9 9 H 1.07998 * 120.00125 * 219.09205 * 8 7 6 10 10 C 1.38923 * 120.00001 * 39.09700 * 8 7 6 11 11 N 1.31456 * 119.99886 * 17.00340 * 10 8 7 12 12 Si 1.86803 * 119.99845 * 197.00052 * 10 8 7 13 13 H 1.48498 * 109.46867 * 60.00303 * 12 10 8 14 14 H 1.48503 * 109.47106 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47118 * 300.00239 * 12 10 8 16 16 C 1.34770 * 119.99997 * 276.63867 * 7 6 5 17 17 O 1.21825 * 120.00083 * 4.52560 * 16 7 6 18 18 C 1.46165 * 119.99735 * 184.53176 * 16 7 6 19 19 N 1.34897 * 126.51048 * 359.13674 * 18 16 7 20 20 C 1.30183 * 109.74513 * 180.02562 * 19 18 16 21 21 C 1.50707 * 125.07891 * 179.97438 * 20 19 18 22 22 N 1.36282 * 109.84802 * 0.02562 * 20 19 18 23 23 C 1.36519 * 132.77833 * 180.02562 * 22 20 19 24 24 C 1.35078 * 120.59333 * 179.97438 * 23 22 20 25 25 C 1.40350 * 120.43120 * 359.97438 * 24 23 22 26 26 C 1.36414 * 119.54934 * 0.02562 * 25 24 23 27 27 C 1.37282 * 107.18622 * 359.72778 * 22 20 19 28 28 H 1.08991 * 109.47037 * 60.00218 * 1 2 3 29 29 H 1.09002 * 109.47171 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47152 * 300.00039 * 1 2 3 31 31 H 1.08998 * 109.47279 * 60.00084 * 5 3 2 32 32 H 1.09004 * 109.46998 * 299.99836 * 5 3 2 33 33 H 1.08996 * 109.47479 * 60.00390 * 6 5 3 34 34 H 1.08998 * 109.47275 * 300.00026 * 6 5 3 35 35 H 0.97008 * 119.99498 * 179.97438 * 11 10 8 36 36 H 1.08997 * 109.47080 * 90.02546 * 21 20 19 37 37 H 1.08994 * 109.47131 * 210.02954 * 21 20 19 38 38 H 1.09000 * 109.46559 * 330.02750 * 21 20 19 39 39 H 1.07999 * 119.70252 * 359.94828 * 23 22 20 40 40 H 1.07992 * 119.78410 * 180.02562 * 24 23 22 41 41 H 1.07999 * 120.22562 * 179.97438 * 25 24 23 42 42 H 1.08001 * 120.39424 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0001 2.7420 0.0011 7 7 5.4632 2.8187 0.0023 8 6 6.1409 2.9859 -1.1758 9 1 7.0685 2.4592 -1.3445 10 6 5.6353 3.8331 -2.1538 11 7 4.7137 4.7181 -1.8444 12 14 6.2650 3.7147 -3.9085 13 1 5.9977 2.3539 -4.4395 14 1 5.5714 4.7209 -4.7522 15 1 7.7267 3.9757 -3.9285 16 6 6.1422 2.7191 1.1621 17 8 5.5467 2.4831 2.1983 18 6 7.5932 2.8944 1.1768 19 7 8.3825 3.1422 0.1113 20 6 9.6226 3.2387 0.4955 21 6 10.7927 3.5103 -0.4146 22 7 9.7049 3.0563 1.8436 23 6 10.7537 3.0600 2.7174 24 6 10.5508 2.8475 4.0358 25 6 9.2564 2.6197 4.5283 26 6 8.1999 2.6135 3.6654 27 6 8.4290 2.8415 2.3024 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 3.9564 0.7805 -0.8891 32 1 3.9557 0.7809 0.8909 33 1 3.6101 3.2359 0.8910 34 1 3.6107 3.2364 -0.8889 35 1 4.3610 5.3099 -2.5273 36 1 10.9521 4.5859 -0.4904 37 1 11.6868 3.0382 -0.0076 38 1 10.5853 3.1031 -1.4042 39 1 11.7547 3.2340 2.3512 40 1 11.3900 2.8536 4.7156 41 1 9.0981 2.4497 5.5830 42 1 7.1981 2.4392 4.0295 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871342488.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:12:26 Heat of formation + Delta-G solvation = -38.814382 kcal Electronic energy + Delta-G solvation = -28429.917906 eV Core-core repulsion = 24376.404011 eV Total energy + Delta-G solvation = -4053.513895 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.66207 -41.56929 -40.19754 -38.28546 -37.64880 -36.74820 -34.45983 -33.75546 -32.48591 -32.34425 -30.80292 -28.81993 -27.74290 -26.82725 -25.60203 -24.66478 -23.52908 -21.97269 -21.77025 -20.98012 -19.34650 -18.76125 -18.06544 -17.65919 -17.63323 -17.39252 -17.08020 -16.94780 -16.38895 -16.20353 -16.03693 -15.41854 -15.32756 -14.94526 -14.73057 -14.30971 -14.16020 -13.93478 -13.80878 -13.58341 -13.35153 -13.13345 -13.01601 -12.87890 -12.76162 -12.62503 -12.49005 -12.40704 -12.10136 -11.98305 -11.80669 -11.62793 -11.51224 -11.08696 -10.90434 -10.44704 -10.19389 -9.44969 -8.32002 -8.18257 -5.92040 -0.18894 0.23122 1.11249 1.41908 1.47103 1.57149 1.59236 1.64695 1.73541 2.38421 2.44102 2.79153 2.98776 3.22017 3.54329 3.67367 3.83132 3.87284 3.99144 4.05954 4.10843 4.25884 4.27331 4.30995 4.31442 4.54533 4.59120 4.64294 4.68471 4.77067 4.84872 4.93244 4.98729 5.08465 5.23982 5.24507 5.35433 5.40037 5.50635 5.69293 5.73893 6.00990 6.33886 6.62455 6.68709 6.95782 7.24802 7.62611 8.01533 8.83693 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.011012 B = 0.004385 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2542.089692 B = 6384.047108 C = 8470.212684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.476 3.524 4 O -0.536 6.536 5 C -0.115 4.115 6 C 0.142 3.858 7 N -0.434 5.434 8 C -0.312 4.312 9 H 0.112 0.888 10 C -0.008 4.008 11 N -0.907 5.907 12 Si 0.983 3.017 13 H -0.263 1.263 14 H -0.288 1.288 15 H -0.261 1.261 16 C 0.531 3.469 17 O -0.633 6.633 18 C -0.079 4.079 19 N -0.415 5.415 20 C 0.135 3.865 21 C -0.053 4.053 22 N -0.364 5.364 23 C 0.046 3.954 24 C -0.133 4.133 25 C -0.093 4.093 26 C -0.111 4.111 27 C 0.051 3.949 28 H 0.061 0.939 29 H 0.139 0.861 30 H 0.060 0.940 31 H 0.116 0.884 32 H 0.102 0.898 33 H 0.031 0.969 34 H 0.095 0.905 35 H 0.267 0.733 36 H 0.087 0.913 37 H 0.109 0.891 38 H 0.086 0.914 39 H 0.211 0.789 40 H 0.199 0.801 41 H 0.171 0.829 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.474 -7.277 6.646 15.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.278 6.278 3 C 0.320 3.680 4 O -0.425 6.425 5 C -0.154 4.154 6 C 0.017 3.983 7 N -0.150 5.150 8 C -0.440 4.440 9 H 0.129 0.871 10 C -0.208 4.208 11 N -0.546 5.546 12 Si 0.806 3.194 13 H -0.188 1.188 14 H -0.213 1.213 15 H -0.185 1.185 16 C 0.323 3.677 17 O -0.523 6.523 18 C -0.212 4.212 19 N -0.130 5.130 20 C -0.122 4.122 21 C -0.112 4.112 22 N -0.036 5.036 23 C -0.075 4.075 24 C -0.153 4.153 25 C -0.115 4.115 26 C -0.130 4.130 27 C -0.063 4.063 28 H 0.080 0.920 29 H 0.157 0.843 30 H 0.079 0.921 31 H 0.134 0.866 32 H 0.120 0.880 33 H 0.050 0.950 34 H 0.113 0.887 35 H 0.076 0.924 36 H 0.106 0.894 37 H 0.127 0.873 38 H 0.105 0.895 39 H 0.228 0.772 40 H 0.216 0.784 41 H 0.189 0.811 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 11.610 -6.844 6.050 14.773 hybrid contribution -0.618 0.470 -0.087 0.781 sum 10.993 -6.375 5.964 14.037 Atomic orbital electron populations 1.23596 0.74681 1.05924 1.02493 1.86507 1.25242 1.32218 1.83857 1.23713 0.91858 0.81339 0.71046 1.90638 1.67748 1.37454 1.46703 1.21658 0.87148 1.00614 1.05941 1.20902 0.81851 0.92982 1.02523 1.43475 1.04618 1.61004 1.05868 1.20057 1.07883 1.25118 0.90933 0.87086 1.26315 0.96945 0.93243 1.04343 1.70087 1.30420 1.18883 1.35185 0.85147 0.78947 0.78167 0.77124 1.18795 1.21348 1.18548 1.17353 0.85726 0.81301 0.83272 1.90574 1.70406 1.58013 1.33261 1.20407 0.93907 1.17925 0.88981 1.70475 1.00270 1.12865 1.29422 1.24583 0.96340 1.10763 0.80493 1.20299 0.90525 1.03681 0.96657 1.43144 1.06913 1.44803 1.08708 1.22648 0.92673 1.02032 0.90174 1.21445 0.98977 1.00787 0.94125 1.21655 0.91590 0.96901 1.01318 1.20730 1.01909 1.01456 0.88945 1.19432 0.84963 1.06459 0.95405 0.92044 0.84288 0.92121 0.86586 0.88015 0.95021 0.88679 0.92410 0.89398 0.87281 0.89499 0.77248 0.78358 0.81127 0.85064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 10.56 113.37 1.20 1.83 16 2 O -0.36 -12.20 10.57 -51.41 -0.54 -12.74 16 3 C 0.48 19.79 7.96 71.24 0.57 20.35 16 4 O -0.54 -25.30 15.73 21.97 0.35 -24.96 16 5 C -0.11 -5.10 6.08 29.85 0.18 -4.92 16 6 C 0.14 7.69 4.10 86.38 0.35 8.04 16 7 N -0.43 -24.59 2.53 -640.57 -1.62 -26.21 16 8 C -0.31 -17.41 7.83 84.06 0.66 -16.76 16 9 H 0.11 6.16 6.07 -2.91 -0.02 6.14 16 10 C -0.01 -0.43 4.99 84.91 0.42 -0.01 16 11 N -0.91 -53.45 11.39 21.66 0.25 -53.21 16 12 Si 0.98 43.10 29.59 68.60 2.03 45.13 16 13 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 14 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 15 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 16 C 0.53 29.97 7.53 86.30 0.65 30.62 16 17 O -0.63 -36.55 15.29 -4.75 -0.07 -36.62 16 18 C -0.08 -3.99 6.78 41.23 0.28 -3.71 16 19 N -0.42 -19.48 8.01 -175.20 -1.40 -20.88 16 20 C 0.14 4.74 7.94 137.82 1.09 5.84 16 21 C -0.05 -1.19 10.32 71.24 0.74 -0.45 16 22 N -0.36 -11.56 2.94 -337.07 -0.99 -12.55 16 23 C 0.05 0.86 10.77 83.24 0.90 1.76 16 24 C -0.13 -2.05 9.98 22.06 0.22 -1.83 16 25 C -0.09 -2.00 10.09 22.36 0.23 -1.78 16 26 C -0.11 -3.78 9.73 22.29 0.22 -3.56 16 27 C 0.05 2.07 6.72 39.24 0.26 2.33 16 28 H 0.06 1.52 8.13 -2.39 -0.02 1.50 16 29 H 0.14 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.06 1.50 8.13 -2.39 -0.02 1.48 16 31 H 0.12 4.81 8.14 -2.39 -0.02 4.79 16 32 H 0.10 4.48 7.94 -2.39 -0.02 4.46 16 33 H 0.03 1.85 7.65 -2.39 -0.02 1.83 16 34 H 0.10 5.57 5.52 -2.39 -0.01 5.56 16 35 H 0.27 14.93 8.31 -92.70 -0.77 14.16 16 36 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.11 1.44 7.98 -2.39 -0.02 1.42 16 38 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.21 1.76 7.94 -2.91 -0.02 1.74 16 40 H 0.20 0.97 8.06 -2.91 -0.02 0.94 16 41 H 0.17 2.38 8.06 -2.91 -0.02 2.36 16 42 H 0.13 5.01 7.17 -2.91 -0.02 4.99 16 Total: -1.00 -86.28 362.26 7.01 -79.26 By element: Atomic # 1 Polarization: 23.97 SS G_CDS: 1.06 Total: 25.02 kcal Atomic # 6 Polarization: 29.80 SS G_CDS: 7.96 Total: 37.76 kcal Atomic # 7 Polarization: -109.08 SS G_CDS: -3.76 Total: -112.84 kcal Atomic # 8 Polarization: -74.05 SS G_CDS: -0.27 Total: -74.32 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -86.28 7.01 -79.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871342488.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.447 kcal (2) G-P(sol) polarization free energy of solvation -86.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds