Wall clock time and date at job start Tue Mar 31 2020 15:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38039 * 126.29302 * 2 1 4 4 C 1.47429 * 126.41402 * 0.02562 * 3 2 1 5 5 O 1.21603 * 119.99837 * 359.97438 * 4 3 2 6 6 N 1.34775 * 120.00109 * 179.97438 * 4 3 2 7 7 C 1.47060 * 136.05778 * 359.62463 * 6 4 3 8 8 C 1.53239 * 88.08446 * 207.20770 * 7 6 4 9 9 C 1.53010 * 114.50515 * 220.45887 * 8 7 6 10 10 C 1.53007 * 109.46923 * 268.84349 * 9 8 7 11 11 F 1.39896 * 109.46922 * 60.00244 * 10 9 8 12 12 F 1.39895 * 109.46761 * 180.02562 * 10 9 8 13 13 F 1.39902 * 109.47175 * 300.00085 * 10 9 8 14 14 C 1.47069 * 136.05603 * 180.02562 * 6 4 3 15 15 C 1.41289 * 107.17227 * 179.90590 * 3 2 1 16 16 N 1.30449 * 108.02172 * 0.36634 * 15 3 2 17 17 N 1.34255 * 126.29135 * 180.31716 * 2 1 3 18 18 C 1.46504 * 125.75251 * 359.97438 * 17 2 1 19 19 C 1.50697 * 109.47391 * 90.00455 * 18 17 2 20 20 H 1.08005 * 119.99554 * 359.97438 * 19 18 17 21 21 C 1.37873 * 120.00346 * 179.97438 * 19 18 17 22 22 N 1.31513 * 119.99952 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 120.00030 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46821 * 90.00049 * 23 21 19 25 25 H 1.48499 * 109.46877 * 210.00309 * 23 21 19 26 26 H 1.48498 * 109.47235 * 330.00414 * 23 21 19 27 27 H 1.09002 * 109.47152 * 269.70923 * 1 2 3 28 28 H 1.09001 * 109.46980 * 149.71024 * 1 2 3 29 29 H 1.09004 * 109.47113 * 29.71004 * 1 2 3 30 30 H 1.09001 * 113.46981 * 321.94277 * 7 6 4 31 31 H 1.08997 * 113.46966 * 92.38042 * 7 6 4 32 32 H 1.09000 * 114.01989 * 87.72044 * 8 7 6 33 33 H 1.08995 * 109.47116 * 28.84215 * 9 8 7 34 34 H 1.08996 * 109.47305 * 148.84642 * 9 8 7 35 35 H 1.09006 * 113.46522 * 267.61981 * 14 6 4 36 36 H 1.08998 * 113.47063 * 38.05748 * 14 6 4 37 37 H 1.07999 * 125.98857 * 180.11575 * 15 3 2 38 38 H 1.09004 * 109.46833 * 209.99868 * 18 17 2 39 39 H 1.08996 * 109.47495 * 329.99908 * 18 17 2 40 40 H 0.97002 * 120.00041 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8859 2.5202 0.0005 5 8 0.6996 2.7877 0.0006 6 7 2.8000 3.5106 0.0010 7 6 4.2680 3.5966 0.0078 8 6 4.1338 4.9562 0.7019 9 6 5.1131 6.0218 0.2051 10 6 6.3848 5.9817 1.0549 11 9 6.9768 4.7186 0.9489 12 9 7.2798 6.9564 0.6010 13 9 6.0601 6.2338 2.3922 14 6 2.7682 4.9810 0.0020 15 6 3.6590 0.6498 0.0022 16 7 3.6340 -0.6544 -0.0045 17 7 2.3017 -1.0821 -0.0060 18 6 1.8500 -2.4758 -0.0132 19 6 1.6947 -2.9462 -1.4364 20 1 1.9105 -2.2741 -2.2538 21 6 1.2773 -4.2345 -1.6950 22 7 1.0141 -5.0528 -0.6996 23 14 1.0841 -4.8174 -3.4592 24 1 2.3651 -5.4028 -3.9301 25 1 0.0153 -5.8462 -3.5264 26 1 0.7185 -3.6666 -4.3236 27 1 -0.3633 -0.0052 1.0277 28 1 -0.3633 -0.8874 -0.5183 29 1 -0.3633 0.8926 -0.5093 30 1 4.7444 2.8386 0.6296 31 1 4.7038 3.6594 -0.9893 32 1 4.0778 4.8959 1.7888 33 1 5.3660 5.8253 -0.8368 34 1 4.6518 7.0059 0.2877 35 1 2.8001 5.4165 -0.9967 36 1 1.9719 5.3976 0.6189 37 1 4.5449 1.2676 0.0046 38 1 2.5849 -3.0985 0.4971 39 1 0.8916 -2.5498 0.5006 40 1 0.7207 -5.9593 -0.8815 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883982162.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:34 Heat of formation + Delta-G solvation = -86.674164 kcal Electronic energy + Delta-G solvation = -28027.671184 eV Core-core repulsion = 23430.225193 eV Total energy + Delta-G solvation = -4597.445991 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.41726 -47.93375 -47.87860 -40.98835 -40.14903 -37.59163 -33.93640 -33.00349 -32.08412 -31.16150 -28.93861 -27.23304 -26.53385 -26.19971 -24.15135 -23.32427 -21.95397 -20.77127 -19.64643 -18.88298 -18.61989 -18.54133 -17.89921 -16.96534 -16.71143 -16.06193 -15.59766 -15.19317 -14.93856 -14.78649 -14.67774 -14.38647 -14.33281 -14.14290 -14.05911 -14.00933 -13.58980 -13.38391 -13.14627 -12.91657 -12.66978 -12.50851 -12.45437 -12.08394 -12.00393 -11.92847 -11.73634 -11.49265 -11.13428 -10.91741 -10.78798 -10.37996 -10.18825 -9.95421 -9.45988 -8.78620 -8.72669 -8.59735 -7.94108 -6.35086 -4.43219 2.13215 2.39037 2.72309 2.80456 3.17337 3.23681 3.26314 3.35884 3.39275 3.60530 3.61440 3.85628 3.95691 4.22991 4.44970 4.49998 4.62468 4.87116 4.94660 5.00321 5.04246 5.12855 5.16134 5.27873 5.41998 5.43132 5.67636 5.76957 5.81873 6.05793 6.08306 6.48696 6.57640 6.77366 6.88552 7.14588 7.54445 7.75374 7.76692 7.77937 8.34062 8.50658 8.62691 9.23902 10.73090 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.021756 B = 0.002452 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.667779 B =11414.736924 C =11966.655792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.167 3.833 3 C -0.329 4.329 4 C 0.635 3.365 5 O -0.551 6.551 6 N -0.648 5.648 7 C 0.102 3.898 8 C -0.136 4.136 9 C -0.154 4.154 10 C 0.452 3.548 11 F -0.180 7.180 12 F -0.187 7.187 13 F -0.184 7.184 14 C 0.120 3.880 15 C 0.054 3.946 16 N -0.295 5.295 17 N -0.313 5.313 18 C 0.251 3.749 19 C -0.541 4.541 20 H 0.065 0.935 21 C 0.068 3.932 22 N -0.889 5.889 23 Si 0.908 3.092 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.271 1.271 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.177 0.823 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.749 23.028 2.824 24.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.029 3.971 3 C -0.344 4.344 4 C 0.430 3.570 5 O -0.430 6.430 6 N -0.384 5.384 7 C -0.021 4.021 8 C -0.156 4.156 9 C -0.193 4.193 10 C 0.398 3.602 11 F -0.161 7.161 12 F -0.168 7.168 13 F -0.165 7.165 14 C -0.003 4.003 15 C -0.133 4.133 16 N -0.115 5.115 17 N -0.090 5.090 18 C 0.134 3.866 19 C -0.580 4.580 20 H 0.084 0.916 21 C -0.136 4.136 22 N -0.527 5.527 23 Si 0.735 3.265 24 H -0.202 1.202 25 H -0.208 1.208 26 H -0.196 1.196 27 H 0.096 0.904 28 H 0.102 0.898 29 H 0.113 0.887 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.136 0.864 33 H 0.134 0.866 34 H 0.136 0.864 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.194 0.806 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.574 21.488 2.885 22.966 hybrid contribution -0.076 0.261 -0.819 0.863 sum 7.498 21.749 2.067 23.098 Atomic orbital electron populations 1.20624 0.86783 1.04887 1.03320 1.21460 0.94966 0.86455 0.94210 1.19537 0.93249 0.91913 1.29684 1.16827 0.83504 0.82746 0.73929 1.90709 1.15966 1.83887 1.52390 1.49135 1.07143 1.06156 1.75986 1.23169 0.82465 0.95810 1.00700 1.23029 0.95686 0.94623 1.02213 1.22810 0.91697 1.03827 1.00957 1.20561 0.86552 0.73597 0.79463 1.93218 1.85893 1.41081 1.95935 1.93194 1.71222 1.63564 1.88827 1.93195 1.92545 1.93977 1.36788 1.22791 0.95504 0.81750 1.00247 1.23985 0.96549 0.92561 1.00169 1.77153 0.98621 1.12281 1.23453 1.49393 1.02494 1.08310 1.48791 1.19864 0.96446 0.70861 0.99456 1.21253 1.47538 0.98190 0.90977 0.91650 1.24925 0.94412 0.95956 0.98345 1.69913 1.44451 1.07023 1.31269 0.86319 0.78108 0.78632 0.83455 1.20231 1.20765 1.19580 0.90441 0.89794 0.88673 0.89428 0.89271 0.86415 0.86568 0.86426 0.89687 0.89914 0.80591 0.92458 0.92517 0.92082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.79 9.35 36.01 0.34 -1.45 16 2 C 0.17 3.44 7.01 -81.60 -0.57 2.86 16 3 C -0.33 -6.16 6.13 -105.07 -0.64 -6.81 16 4 C 0.64 10.87 8.06 -12.52 -0.10 10.77 16 5 O -0.55 -10.77 15.61 5.27 0.08 -10.69 16 6 N -0.65 -8.00 3.69 -186.69 -0.69 -8.69 16 7 C 0.10 0.87 6.36 -8.65 -0.05 0.81 16 8 C -0.14 -0.85 3.71 -90.25 -0.34 -1.18 16 9 C -0.15 -0.61 5.18 -26.72 -0.14 -0.75 16 10 C 0.45 2.94 3.16 37.16 0.12 3.05 16 11 F -0.18 -1.44 16.75 2.25 0.04 -1.40 16 12 F -0.19 -1.37 17.32 2.25 0.04 -1.33 16 13 F -0.18 -1.43 16.69 2.25 0.04 -1.40 16 14 C 0.12 0.97 8.20 -8.52 -0.07 0.90 16 15 C 0.05 0.97 11.14 -16.98 -0.19 0.78 16 16 N -0.30 -6.43 12.50 30.86 0.39 -6.04 16 17 N -0.31 -7.14 3.56 -57.77 -0.21 -7.34 16 18 C 0.25 6.25 5.78 -5.19 -0.03 6.22 16 19 C -0.54 -14.57 9.39 -34.44 -0.32 -14.89 16 20 H 0.07 1.81 7.81 -52.48 -0.41 1.40 16 21 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 22 N -0.89 -24.55 13.29 55.43 0.74 -23.81 16 23 Si 0.91 20.76 29.54 -169.99 -5.02 15.73 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 27 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 28 H 0.08 1.58 7.70 -51.93 -0.40 1.18 16 29 H 0.09 1.71 6.49 -51.93 -0.34 1.37 16 30 H 0.09 0.77 6.16 -51.93 -0.32 0.45 16 31 H 0.09 0.61 7.89 -51.93 -0.41 0.20 16 32 H 0.12 0.79 7.63 -51.93 -0.40 0.39 16 33 H 0.12 0.29 7.83 -51.93 -0.41 -0.11 16 34 H 0.12 0.25 8.14 -51.93 -0.42 -0.18 16 35 H 0.09 0.53 8.11 -51.93 -0.42 0.11 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.18 2.39 5.22 -52.49 -0.27 2.11 16 38 H 0.06 1.52 8.14 -51.93 -0.42 1.09 16 39 H 0.06 1.40 7.62 -51.93 -0.40 1.01 16 40 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 352.51 15.07 5.31 5.31 Total: -1.00 -32.38 352.51 -5.98 -38.36 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -4.60 Total: -0.75 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: -2.10 Total: 2.04 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: 0.23 Total: -45.89 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.08 Total: -10.69 kcal Atomic # 9 Polarization: -4.24 SS G_CDS: 0.11 Total: -4.13 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.38 -5.98 -38.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883982162.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.317 kcal (2) G-P(sol) polarization free energy of solvation -32.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds