Wall clock time and date at job start Tue Mar 31 2020 15:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38039 * 126.29302 * 2 1 4 4 C 1.47429 * 126.41402 * 0.02562 * 3 2 1 5 5 O 1.21603 * 119.99837 * 359.97438 * 4 3 2 6 6 N 1.34775 * 120.00109 * 179.97438 * 4 3 2 7 7 C 1.47060 * 136.05778 * 359.62463 * 6 4 3 8 8 C 1.53239 * 88.08446 * 207.20770 * 7 6 4 9 9 C 1.53010 * 114.50515 * 220.45887 * 8 7 6 10 10 C 1.53007 * 109.46923 * 268.84349 * 9 8 7 11 11 F 1.39896 * 109.46922 * 60.00244 * 10 9 8 12 12 F 1.39895 * 109.46761 * 180.02562 * 10 9 8 13 13 F 1.39902 * 109.47175 * 300.00085 * 10 9 8 14 14 C 1.47069 * 136.05603 * 180.02562 * 6 4 3 15 15 C 1.41289 * 107.17227 * 179.90590 * 3 2 1 16 16 N 1.30449 * 108.02172 * 0.36634 * 15 3 2 17 17 N 1.34255 * 126.29135 * 180.31716 * 2 1 3 18 18 C 1.46504 * 125.75251 * 359.97438 * 17 2 1 19 19 C 1.50697 * 109.47391 * 90.00455 * 18 17 2 20 20 H 1.08005 * 119.99554 * 359.97438 * 19 18 17 21 21 C 1.37873 * 120.00346 * 179.97438 * 19 18 17 22 22 N 1.31513 * 119.99952 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 120.00030 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46821 * 90.00049 * 23 21 19 25 25 H 1.48499 * 109.46877 * 210.00309 * 23 21 19 26 26 H 1.48498 * 109.47235 * 330.00414 * 23 21 19 27 27 H 1.09002 * 109.47152 * 269.70923 * 1 2 3 28 28 H 1.09001 * 109.46980 * 149.71024 * 1 2 3 29 29 H 1.09004 * 109.47113 * 29.71004 * 1 2 3 30 30 H 1.09001 * 113.46981 * 321.94277 * 7 6 4 31 31 H 1.08997 * 113.46966 * 92.38042 * 7 6 4 32 32 H 1.09000 * 114.01989 * 87.72044 * 8 7 6 33 33 H 1.08995 * 109.47116 * 28.84215 * 9 8 7 34 34 H 1.08996 * 109.47305 * 148.84642 * 9 8 7 35 35 H 1.09006 * 113.46522 * 267.61981 * 14 6 4 36 36 H 1.08998 * 113.47063 * 38.05748 * 14 6 4 37 37 H 1.07999 * 125.98857 * 180.11575 * 15 3 2 38 38 H 1.09004 * 109.46833 * 209.99868 * 18 17 2 39 39 H 1.08996 * 109.47495 * 329.99908 * 18 17 2 40 40 H 0.97002 * 120.00041 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8859 2.5202 0.0005 5 8 0.6996 2.7877 0.0006 6 7 2.8000 3.5106 0.0010 7 6 4.2680 3.5966 0.0078 8 6 4.1338 4.9562 0.7019 9 6 5.1131 6.0218 0.2051 10 6 6.3848 5.9817 1.0549 11 9 6.9768 4.7186 0.9489 12 9 7.2798 6.9564 0.6010 13 9 6.0601 6.2338 2.3922 14 6 2.7682 4.9810 0.0020 15 6 3.6590 0.6498 0.0022 16 7 3.6340 -0.6544 -0.0045 17 7 2.3017 -1.0821 -0.0060 18 6 1.8500 -2.4758 -0.0132 19 6 1.6947 -2.9462 -1.4364 20 1 1.9105 -2.2741 -2.2538 21 6 1.2773 -4.2345 -1.6950 22 7 1.0141 -5.0528 -0.6996 23 14 1.0841 -4.8174 -3.4592 24 1 2.3651 -5.4028 -3.9301 25 1 0.0153 -5.8462 -3.5264 26 1 0.7185 -3.6666 -4.3236 27 1 -0.3633 -0.0052 1.0277 28 1 -0.3633 -0.8874 -0.5183 29 1 -0.3633 0.8926 -0.5093 30 1 4.7444 2.8386 0.6296 31 1 4.7038 3.6594 -0.9893 32 1 4.0778 4.8959 1.7888 33 1 5.3660 5.8253 -0.8368 34 1 4.6518 7.0059 0.2877 35 1 2.8001 5.4165 -0.9967 36 1 1.9719 5.3976 0.6189 37 1 4.5449 1.2676 0.0046 38 1 2.5849 -3.0985 0.4971 39 1 0.8916 -2.5498 0.5006 40 1 0.7207 -5.9593 -0.8815 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883982162.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:33 Heat of formation + Delta-G solvation = -106.890947 kcal Electronic energy + Delta-G solvation = -28028.547850 eV Core-core repulsion = 23430.225193 eV Total energy + Delta-G solvation = -4598.322657 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.93959 -48.46173 -48.42427 -42.39917 -41.14183 -38.79952 -35.83749 -34.04494 -33.46561 -32.74175 -30.09224 -28.81889 -27.88133 -27.02809 -25.37266 -24.66611 -23.05979 -21.70139 -20.97516 -19.87006 -19.36320 -19.14439 -18.87751 -18.44833 -18.12692 -17.06684 -16.78568 -16.61331 -16.34252 -15.89787 -15.58066 -15.32639 -15.18110 -14.89233 -14.85312 -14.61122 -14.58823 -14.41241 -14.34203 -14.13022 -13.96360 -13.66293 -13.62164 -13.55300 -13.13297 -13.06881 -12.95589 -12.72837 -12.53334 -12.48782 -12.31684 -11.87336 -11.73018 -11.43409 -10.80107 -10.77734 -10.29878 -9.84441 -9.40007 -8.39287 -6.56077 0.63665 1.27329 1.36864 1.37721 1.47836 1.58334 1.90945 2.00658 2.31595 2.48073 2.89037 2.92792 3.15193 3.18826 3.39704 3.53134 3.70687 3.91925 4.00225 4.08558 4.15841 4.22530 4.34884 4.51542 4.60013 4.63002 4.63913 4.73298 4.74425 4.78736 4.86231 5.00630 5.06231 5.17069 5.26043 5.47392 5.64123 5.72891 6.01625 6.52870 6.69977 6.78690 7.15205 7.25467 8.68709 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.021756 B = 0.002452 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.667779 B =11414.736924 C =11966.655792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.146 3.854 3 C -0.328 4.328 4 C 0.630 3.370 5 O -0.585 6.585 6 N -0.653 5.653 7 C 0.090 3.910 8 C -0.115 4.115 9 C -0.142 4.142 10 C 0.448 3.552 11 F -0.191 7.191 12 F -0.192 7.192 13 F -0.194 7.194 14 C 0.118 3.882 15 C 0.074 3.926 16 N -0.335 5.335 17 N -0.337 5.337 18 C 0.267 3.733 19 C -0.557 4.557 20 H 0.052 0.948 21 C 0.024 3.976 22 N -0.917 5.917 23 Si 0.972 3.028 24 H -0.272 1.272 25 H -0.271 1.271 26 H -0.269 1.269 27 H 0.092 0.908 28 H 0.071 0.929 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.116 0.884 32 H 0.112 0.888 33 H 0.140 0.860 34 H 0.144 0.856 35 H 0.113 0.887 36 H 0.079 0.921 37 H 0.220 0.780 38 H 0.032 0.968 39 H 0.051 0.949 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.631 25.355 1.629 26.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.010 3.990 3 C -0.343 4.343 4 C 0.423 3.577 5 O -0.467 6.467 6 N -0.387 5.387 7 C -0.032 4.032 8 C -0.134 4.134 9 C -0.180 4.180 10 C 0.394 3.606 11 F -0.173 7.173 12 F -0.173 7.173 13 F -0.176 7.176 14 C -0.004 4.004 15 C -0.112 4.112 16 N -0.155 5.155 17 N -0.114 5.114 18 C 0.149 3.851 19 C -0.595 4.595 20 H 0.070 0.930 21 C -0.177 4.177 22 N -0.554 5.554 23 Si 0.796 3.204 24 H -0.198 1.198 25 H -0.196 1.196 26 H -0.194 1.194 27 H 0.110 0.890 28 H 0.090 0.910 29 H 0.116 0.884 30 H 0.102 0.898 31 H 0.134 0.866 32 H 0.130 0.870 33 H 0.158 0.842 34 H 0.162 0.838 35 H 0.131 0.869 36 H 0.098 0.902 37 H 0.236 0.764 38 H 0.050 0.950 39 H 0.069 0.931 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.501 23.868 1.703 25.394 hybrid contribution -0.243 -0.290 -0.378 0.535 sum 8.258 23.578 1.325 25.018 Atomic orbital electron populations 1.20587 0.85743 1.04296 1.04106 1.21969 0.95999 0.86624 0.94435 1.19897 0.93275 0.92876 1.28282 1.16573 0.83752 0.82878 0.74463 1.90680 1.17431 1.84350 1.54215 1.49178 1.08482 1.07423 1.73639 1.23575 0.79989 0.97106 1.02538 1.22798 0.95030 0.93905 1.01686 1.22843 0.89614 1.04233 1.01346 1.20976 0.87298 0.72973 0.79354 1.93198 1.86270 1.41842 1.95950 1.93185 1.71614 1.63736 1.88812 1.93179 1.92583 1.93998 1.37822 1.23122 0.96354 0.78813 1.02078 1.24645 0.97702 0.91552 0.97320 1.77096 0.98431 1.14317 1.25645 1.49135 1.03321 1.07806 1.51144 1.19385 0.95298 0.72221 0.98227 1.21390 1.48082 0.98537 0.91484 0.93011 1.25739 0.93751 0.95855 1.02393 1.69996 1.44767 1.07456 1.33218 0.85337 0.78372 0.78229 0.78477 1.19761 1.19554 1.19380 0.88994 0.90999 0.88353 0.89786 0.86616 0.86957 0.84211 0.83801 0.86886 0.90216 0.76437 0.95007 0.93117 0.91607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.35 9.35 71.24 0.67 -2.68 16 2 C 0.15 6.14 7.01 42.14 0.30 6.44 16 3 C -0.33 -12.18 6.13 -20.15 -0.12 -12.31 16 4 C 0.63 20.91 8.06 86.66 0.70 21.61 16 5 O -0.58 -22.62 15.61 -4.04 -0.06 -22.69 16 6 N -0.65 -14.50 3.69 -862.81 -3.19 -17.68 16 7 C 0.09 1.21 6.36 83.09 0.53 1.74 16 8 C -0.12 -1.01 3.71 -10.55 -0.04 -1.05 16 9 C -0.14 -0.50 5.18 30.60 0.16 -0.34 16 10 C 0.45 4.53 3.16 71.98 0.23 4.76 16 11 F -0.19 -2.59 16.75 44.97 0.75 -1.84 16 12 F -0.19 -2.33 17.32 44.97 0.78 -1.55 16 13 F -0.19 -2.62 16.69 44.97 0.75 -1.87 16 14 C 0.12 1.49 8.20 83.17 0.68 2.18 16 15 C 0.07 2.59 11.14 85.65 0.95 3.54 16 16 N -0.34 -14.78 12.50 -56.28 -0.70 -15.48 16 17 N -0.34 -15.87 3.56 -336.70 -1.20 -17.07 16 18 C 0.27 13.95 5.78 85.63 0.50 14.44 16 19 C -0.56 -30.87 9.39 25.60 0.24 -30.63 16 20 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 21 C 0.02 1.30 5.46 84.65 0.46 1.77 16 22 N -0.92 -51.42 13.29 21.45 0.28 -51.14 16 23 Si 0.97 42.67 29.54 68.60 2.03 44.70 16 24 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 25 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 26 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 27 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 28 H 0.07 2.82 7.70 -2.39 -0.02 2.80 16 29 H 0.10 3.60 6.49 -2.38 -0.02 3.59 16 30 H 0.08 1.22 6.16 -2.39 -0.01 1.20 16 31 H 0.12 1.03 7.89 -2.39 -0.02 1.01 16 32 H 0.11 1.18 7.63 -2.39 -0.02 1.16 16 33 H 0.14 -0.06 7.83 -2.39 -0.02 -0.08 16 34 H 0.14 -0.13 8.14 -2.39 -0.02 -0.15 16 35 H 0.11 0.88 8.11 -2.38 -0.02 0.86 16 36 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.22 5.36 5.22 -2.91 -0.02 5.34 16 38 H 0.03 1.78 8.14 -2.38 -0.02 1.77 16 39 H 0.05 2.65 7.62 -2.39 -0.02 2.63 16 40 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -72.64 352.51 5.78 -66.86 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: 1.09 Total: 8.30 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: 5.24 Total: 9.46 kcal Atomic # 7 Polarization: -96.57 SS G_CDS: -4.80 Total: -101.37 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.06 Total: -22.69 kcal Atomic # 9 Polarization: -7.54 SS G_CDS: 2.28 Total: -5.26 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -72.64 5.78 -66.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883982162.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.033 kcal (2) G-P(sol) polarization free energy of solvation -72.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds