Wall clock time and date at job start Tue Mar 31 2020 15:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38049 * 126.29003 * 2 1 4 4 C 1.47431 * 126.41384 * 359.97438 * 3 2 1 5 5 O 1.21601 * 120.00161 * 333.09372 * 4 3 2 6 6 N 1.34780 * 119.99562 * 153.08838 * 4 3 2 7 7 C 1.46496 * 120.00132 * 8.29584 * 6 4 3 8 8 C 1.52997 * 109.47223 * 97.32692 * 7 6 4 9 9 F 1.39903 * 109.46968 * 60.00094 * 8 7 6 10 10 F 1.39901 * 109.47095 * 179.97438 * 8 7 6 11 11 F 1.39903 * 109.47050 * 299.99876 * 8 7 6 12 12 C 1.46499 * 119.99744 * 188.29261 * 6 4 3 13 13 C 1.53003 * 117.50020 * 17.27328 * 12 6 4 14 14 C 1.52995 * 117.50309 * 308.65102 * 12 6 4 15 15 C 1.41284 * 107.16791 * 180.24957 * 3 2 1 16 16 N 1.30453 * 108.02629 * 359.77782 * 15 3 2 17 17 N 1.34259 * 126.29124 * 179.87239 * 2 1 3 18 18 C 1.46495 * 125.75529 * 0.02562 * 17 2 1 19 19 C 1.50693 * 109.47257 * 269.72056 * 18 17 2 20 20 H 1.07999 * 120.00445 * 359.97438 * 19 18 17 21 21 C 1.37884 * 120.00119 * 179.72608 * 19 18 17 22 22 N 1.31513 * 119.99542 * 0.26808 * 21 19 18 23 23 Si 1.86794 * 120.00049 * 180.27433 * 21 19 18 24 24 H 1.48498 * 109.47341 * 90.00057 * 23 21 19 25 25 H 1.48505 * 109.47054 * 209.99543 * 23 21 19 26 26 H 1.48501 * 109.47387 * 329.99594 * 23 21 19 27 27 H 1.09001 * 109.46899 * 270.15384 * 1 2 3 28 28 H 1.09007 * 109.47125 * 30.15096 * 1 2 3 29 29 H 1.09000 * 109.47021 * 150.15190 * 1 2 3 30 30 H 1.08999 * 109.47353 * 217.32843 * 7 6 4 31 31 H 1.09004 * 109.47100 * 337.32495 * 7 6 4 32 32 H 1.09003 * 115.54884 * 162.97269 * 12 6 4 33 33 H 1.09005 * 117.49823 * 359.97438 * 13 12 6 34 34 H 1.08994 * 117.50527 * 145.01686 * 13 12 6 35 35 H 1.08995 * 117.50104 * 214.98256 * 14 12 6 36 36 H 1.09004 * 117.49624 * 359.97019 * 14 12 6 37 37 H 1.07998 * 125.99062 * 179.80234 * 15 3 2 38 38 H 1.09001 * 109.47016 * 149.71680 * 18 17 2 39 39 H 1.09008 * 109.46737 * 29.72084 * 18 17 2 40 40 H 0.97003 * 119.99914 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8858 2.5204 -0.0005 5 8 0.8086 2.8216 -0.4775 6 7 2.6791 3.4733 0.5278 7 6 4.0469 3.1442 0.9364 8 6 5.0202 3.5371 -0.1767 9 9 4.9233 4.9120 -0.4170 10 9 6.3264 3.2234 0.2137 11 9 4.7008 2.8359 -1.3445 12 6 2.1735 4.8383 0.6935 13 6 0.6580 5.0417 0.6401 14 6 1.5339 5.5075 -0.5246 15 6 3.6590 0.6499 -0.0059 16 7 3.6340 -0.6544 -0.0043 17 7 2.3017 -1.0822 0.0024 18 6 1.8501 -2.4758 0.0050 19 6 1.7014 -2.9530 1.4266 20 1 1.9216 -2.2852 2.2463 21 6 1.2792 -4.2407 1.6809 22 7 1.0114 -5.0541 0.6828 23 14 1.0874 -4.8299 3.4432 24 1 -0.2937 -4.5496 3.9113 25 1 1.3448 -6.2910 3.5074 26 1 2.0586 -4.1175 4.3118 27 1 -0.3633 0.0028 1.0277 28 1 -0.3634 0.8887 -0.5162 29 1 -0.3633 -0.8913 -0.5115 30 1 4.2957 3.6904 1.8462 31 1 4.1223 2.0730 1.1237 32 1 2.7428 5.4711 1.3744 33 1 0.0371 4.1599 0.4812 34 1 0.2299 5.8083 1.2859 35 1 1.6822 6.5806 -0.6451 36 1 1.4897 4.9323 -1.4495 37 1 4.5448 1.2676 -0.0104 38 1 2.5826 -3.0960 -0.5118 39 1 0.8892 -2.5472 -0.5048 40 1 0.7147 -5.9601 0.8617 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888415633.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:24 Heat of formation + Delta-G solvation = -60.856289 kcal Electronic energy + Delta-G solvation = -29712.697666 eV Core-core repulsion = 25116.371222 eV Total energy + Delta-G solvation = -4596.326444 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -50.24787 -47.73375 -47.70023 -41.17985 -39.78331 -36.39220 -35.17251 -33.81376 -32.18116 -31.16449 -29.23181 -27.65160 -26.73613 -24.05081 -23.84772 -22.80728 -22.37438 -21.46173 -19.92254 -18.98732 -18.51393 -18.44686 -17.87504 -16.91183 -16.58776 -16.14399 -15.66433 -15.05693 -14.90209 -14.66587 -14.57617 -14.38540 -14.28980 -14.10693 -13.93787 -13.82762 -13.64088 -13.54074 -13.04758 -12.74010 -12.59087 -12.48613 -12.35845 -11.99734 -11.76459 -11.57522 -11.36278 -11.19990 -11.12729 -10.93779 -10.45021 -10.41319 -10.27956 -9.99294 -9.39620 -8.75975 -8.73090 -8.64092 -8.04144 -6.38539 -4.46905 1.94734 2.44004 2.57468 2.68527 3.14101 3.18561 3.21573 3.29224 3.42298 3.61631 3.81445 3.91136 4.14008 4.19587 4.57586 4.70719 4.80497 4.92378 4.97843 4.99507 5.08150 5.11091 5.26937 5.48010 5.61064 5.69932 5.72310 5.97139 6.01180 6.27032 6.34939 6.38243 6.56453 6.67462 6.84278 7.00674 7.20987 7.48673 7.68418 7.71329 8.20653 8.29070 8.57873 9.20249 10.69726 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.016620 B = 0.003644 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.318982 B = 7682.882123 C = 8493.899073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.168 3.832 3 C -0.335 4.335 4 C 0.614 3.386 5 O -0.527 6.527 6 N -0.584 5.584 7 C 0.048 3.952 8 C 0.428 3.572 9 F -0.179 7.179 10 F -0.181 7.181 11 F -0.173 7.173 12 C 0.067 3.933 13 C -0.185 4.185 14 C -0.181 4.181 15 C 0.039 3.961 16 N -0.285 5.285 17 N -0.308 5.308 18 C 0.250 3.750 19 C -0.542 4.542 20 H 0.066 0.934 21 C 0.068 3.932 22 N -0.888 5.888 23 Si 0.908 3.092 24 H -0.276 1.276 25 H -0.282 1.282 26 H -0.271 1.271 27 H 0.083 0.917 28 H 0.095 0.905 29 H 0.078 0.922 30 H 0.122 0.878 31 H 0.153 0.847 32 H 0.129 0.871 33 H 0.135 0.865 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.177 0.823 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.644 18.761 0.715 19.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.031 3.969 3 C -0.350 4.350 4 C 0.407 3.593 5 O -0.405 6.405 6 N -0.315 5.315 7 C -0.079 4.079 8 C 0.372 3.628 9 F -0.161 7.161 10 F -0.162 7.162 11 F -0.154 7.154 12 C -0.036 4.036 13 C -0.222 4.222 14 C -0.220 4.220 15 C -0.147 4.147 16 N -0.105 5.105 17 N -0.085 5.085 18 C 0.133 3.867 19 C -0.580 4.580 20 H 0.084 0.916 21 C -0.136 4.136 22 N -0.525 5.525 23 Si 0.735 3.265 24 H -0.202 1.202 25 H -0.208 1.208 26 H -0.196 1.196 27 H 0.101 0.899 28 H 0.114 0.886 29 H 0.096 0.904 30 H 0.140 0.860 31 H 0.170 0.830 32 H 0.147 0.853 33 H 0.152 0.848 34 H 0.108 0.892 35 H 0.112 0.888 36 H 0.118 0.882 37 H 0.193 0.807 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.695 17.440 0.375 17.832 hybrid contribution -0.010 0.415 0.718 0.830 sum 3.686 17.856 1.093 18.265 Atomic orbital electron populations 1.20626 0.86704 1.04433 1.03891 1.21405 0.94920 0.86270 0.94289 1.19568 0.93228 0.92294 1.29952 1.17424 0.82954 0.83650 0.75258 1.90585 1.22821 1.82084 1.44977 1.46880 1.11302 1.09388 1.63958 1.23368 0.81366 1.08478 0.94683 1.21431 0.81248 0.75345 0.84816 1.93187 1.96034 1.31684 1.95179 1.93208 1.39516 1.92704 1.90792 1.93233 1.92463 1.78254 1.51480 1.21715 0.96279 0.83160 1.02475 1.23757 0.92924 1.04771 1.00744 1.23245 1.04185 1.00098 0.94468 1.24070 0.96239 0.92831 1.01550 1.77197 0.98689 1.11951 1.22695 1.49430 1.02388 1.08420 1.48290 1.19912 0.96535 0.70700 0.99581 1.21218 1.47611 0.98313 0.90851 0.91624 1.24923 0.94388 0.95960 0.98331 1.69911 1.44142 1.07284 1.31208 0.86316 0.78733 0.78043 0.83396 1.20206 1.20758 1.19615 0.89862 0.88611 0.90358 0.85961 0.82999 0.85297 0.84769 0.89184 0.88800 0.88220 0.80660 0.92348 0.92432 0.92041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.66 9.85 36.01 0.35 -1.30 16 2 C 0.17 3.27 7.00 -81.60 -0.57 2.70 16 3 C -0.33 -5.92 5.76 -105.07 -0.61 -6.53 16 4 C 0.61 9.73 7.20 -12.52 -0.09 9.64 16 5 O -0.53 -9.03 10.88 5.28 0.06 -8.97 16 6 N -0.58 -7.31 2.76 -167.37 -0.46 -7.77 16 7 C 0.05 0.48 5.11 -4.05 -0.02 0.46 16 8 C 0.43 4.75 2.70 37.16 0.10 4.85 16 9 F -0.18 -2.00 16.49 2.25 0.04 -1.96 16 10 F -0.18 -1.94 17.32 2.25 0.04 -1.90 16 11 F -0.17 -2.36 14.97 2.25 0.03 -2.33 16 12 C 0.07 0.72 5.85 -67.93 -0.40 0.32 16 13 C -0.18 -2.07 9.63 -26.73 -0.26 -2.33 16 14 C -0.18 -2.02 9.86 -26.74 -0.26 -2.29 16 15 C 0.04 0.68 8.86 -16.98 -0.15 0.53 16 16 N -0.29 -6.01 12.50 30.86 0.39 -5.63 16 17 N -0.31 -6.74 3.56 -57.78 -0.21 -6.95 16 18 C 0.25 6.03 5.97 -5.20 -0.03 6.00 16 19 C -0.54 -14.10 9.39 -34.44 -0.32 -14.42 16 20 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 21 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 22 N -0.89 -24.03 13.29 55.43 0.74 -23.30 16 23 Si 0.91 20.21 29.54 -169.99 -5.02 15.19 16 24 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 27 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 28 H 0.10 1.53 6.41 -51.93 -0.33 1.19 16 29 H 0.08 1.31 7.05 -51.93 -0.37 0.94 16 30 H 0.12 0.82 8.12 -51.93 -0.42 0.39 16 31 H 0.15 1.70 3.80 -51.93 -0.20 1.51 16 32 H 0.13 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.13 1.88 5.36 -51.93 -0.28 1.60 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.10 1.36 7.46 -51.93 -0.39 0.97 16 37 H 0.18 2.50 3.78 -52.49 -0.20 2.30 16 38 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 39 H 0.06 1.38 7.01 -51.92 -0.36 1.02 16 40 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 341.08 15.07 5.14 5.14 Total: -1.00 -29.19 341.08 -5.82 -35.01 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -4.20 Total: 4.14 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -2.35 Total: -0.67 kcal Atomic # 7 Polarization: -44.10 SS G_CDS: 0.45 Total: -43.65 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.06 Total: -8.97 kcal Atomic # 9 Polarization: -6.30 SS G_CDS: 0.11 Total: -6.19 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.19 -5.82 -35.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888415633.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.847 kcal (2) G-P(sol) polarization free energy of solvation -29.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds