Wall clock time and date at job start Tue Mar 31 2020 15:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38049 * 126.29003 * 2 1 4 4 C 1.47431 * 126.41384 * 359.97438 * 3 2 1 5 5 O 1.21601 * 120.00161 * 333.09372 * 4 3 2 6 6 N 1.34780 * 119.99562 * 153.08838 * 4 3 2 7 7 C 1.46496 * 120.00132 * 8.29584 * 6 4 3 8 8 C 1.52997 * 109.47223 * 97.32692 * 7 6 4 9 9 F 1.39903 * 109.46968 * 60.00094 * 8 7 6 10 10 F 1.39901 * 109.47095 * 179.97438 * 8 7 6 11 11 F 1.39903 * 109.47050 * 299.99876 * 8 7 6 12 12 C 1.46499 * 119.99744 * 188.29261 * 6 4 3 13 13 C 1.53003 * 117.50020 * 17.27328 * 12 6 4 14 14 C 1.52995 * 117.50309 * 308.65102 * 12 6 4 15 15 C 1.41284 * 107.16791 * 180.24957 * 3 2 1 16 16 N 1.30453 * 108.02629 * 359.77782 * 15 3 2 17 17 N 1.34259 * 126.29124 * 179.87239 * 2 1 3 18 18 C 1.46495 * 125.75529 * 0.02562 * 17 2 1 19 19 C 1.50693 * 109.47257 * 269.72056 * 18 17 2 20 20 H 1.07999 * 120.00445 * 359.97438 * 19 18 17 21 21 C 1.37884 * 120.00119 * 179.72608 * 19 18 17 22 22 N 1.31513 * 119.99542 * 0.26808 * 21 19 18 23 23 Si 1.86794 * 120.00049 * 180.27433 * 21 19 18 24 24 H 1.48498 * 109.47341 * 90.00057 * 23 21 19 25 25 H 1.48505 * 109.47054 * 209.99543 * 23 21 19 26 26 H 1.48501 * 109.47387 * 329.99594 * 23 21 19 27 27 H 1.09001 * 109.46899 * 270.15384 * 1 2 3 28 28 H 1.09007 * 109.47125 * 30.15096 * 1 2 3 29 29 H 1.09000 * 109.47021 * 150.15190 * 1 2 3 30 30 H 1.08999 * 109.47353 * 217.32843 * 7 6 4 31 31 H 1.09004 * 109.47100 * 337.32495 * 7 6 4 32 32 H 1.09003 * 115.54884 * 162.97269 * 12 6 4 33 33 H 1.09005 * 117.49823 * 359.97438 * 13 12 6 34 34 H 1.08994 * 117.50527 * 145.01686 * 13 12 6 35 35 H 1.08995 * 117.50104 * 214.98256 * 14 12 6 36 36 H 1.09004 * 117.49624 * 359.97019 * 14 12 6 37 37 H 1.07998 * 125.99062 * 179.80234 * 15 3 2 38 38 H 1.09001 * 109.47016 * 149.71680 * 18 17 2 39 39 H 1.09008 * 109.46737 * 29.72084 * 18 17 2 40 40 H 0.97003 * 119.99914 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8858 2.5204 -0.0005 5 8 0.8086 2.8216 -0.4775 6 7 2.6791 3.4733 0.5278 7 6 4.0469 3.1442 0.9364 8 6 5.0202 3.5371 -0.1767 9 9 4.9233 4.9120 -0.4170 10 9 6.3264 3.2234 0.2137 11 9 4.7008 2.8359 -1.3445 12 6 2.1735 4.8383 0.6935 13 6 0.6580 5.0417 0.6401 14 6 1.5339 5.5075 -0.5246 15 6 3.6590 0.6499 -0.0059 16 7 3.6340 -0.6544 -0.0043 17 7 2.3017 -1.0822 0.0024 18 6 1.8501 -2.4758 0.0050 19 6 1.7014 -2.9530 1.4266 20 1 1.9216 -2.2852 2.2463 21 6 1.2792 -4.2407 1.6809 22 7 1.0114 -5.0541 0.6828 23 14 1.0874 -4.8299 3.4432 24 1 -0.2937 -4.5496 3.9113 25 1 1.3448 -6.2910 3.5074 26 1 2.0586 -4.1175 4.3118 27 1 -0.3633 0.0028 1.0277 28 1 -0.3634 0.8887 -0.5162 29 1 -0.3633 -0.8913 -0.5115 30 1 4.2957 3.6904 1.8462 31 1 4.1223 2.0730 1.1237 32 1 2.7428 5.4711 1.3744 33 1 0.0371 4.1599 0.4812 34 1 0.2299 5.8083 1.2859 35 1 1.6822 6.5806 -0.6451 36 1 1.4897 4.9323 -1.4495 37 1 4.5448 1.2676 -0.0104 38 1 2.5826 -3.0960 -0.5118 39 1 0.8892 -2.5472 -0.5048 40 1 0.7147 -5.9601 0.8617 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888415633.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:22 Heat of formation + Delta-G solvation = -77.267049 kcal Electronic energy + Delta-G solvation = -29713.409290 eV Core-core repulsion = 25116.371222 eV Total energy + Delta-G solvation = -4597.038068 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -51.15666 -48.66778 -48.59114 -42.60077 -40.98111 -37.48341 -36.31510 -35.52506 -33.83261 -32.72330 -30.19982 -29.35741 -28.23634 -25.68635 -24.89202 -24.03021 -23.24587 -22.77653 -21.19713 -20.21701 -19.50247 -19.44427 -18.95445 -18.84131 -17.69816 -17.40326 -16.91243 -16.54138 -16.28868 -15.89955 -15.68769 -15.48813 -15.46051 -15.15066 -15.00015 -14.82607 -14.71150 -14.63416 -14.37170 -14.08527 -13.94665 -13.87270 -13.61845 -13.43672 -13.14909 -13.00845 -12.94416 -12.68916 -12.31486 -12.29221 -12.04743 -11.85367 -11.77567 -11.26867 -10.75245 -10.63896 -10.32886 -9.72566 -9.49148 -8.37338 -6.53803 0.56948 1.11919 1.38772 1.39543 1.43489 1.51608 1.64909 1.74629 2.18303 2.33500 2.73568 2.94046 2.95685 3.01579 3.21636 3.47374 3.61665 3.73525 3.90441 4.00087 4.11325 4.14854 4.21028 4.23835 4.32120 4.56729 4.63820 4.76416 4.87205 4.90312 4.99550 5.09563 5.14158 5.39483 5.45902 5.50627 5.64001 5.74003 5.98759 6.08081 6.54437 6.71311 7.05369 7.17512 8.70841 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.016620 B = 0.003644 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.318982 B = 7682.882123 C = 8493.899073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.153 3.847 3 C -0.332 4.332 4 C 0.612 3.388 5 O -0.544 6.544 6 N -0.580 5.580 7 C 0.047 3.953 8 C 0.430 3.570 9 F -0.176 7.176 10 F -0.177 7.177 11 F -0.192 7.192 12 C 0.068 3.932 13 C -0.189 4.189 14 C -0.184 4.184 15 C 0.059 3.941 16 N -0.326 5.326 17 N -0.332 5.332 18 C 0.265 3.735 19 C -0.554 4.554 20 H 0.056 0.944 21 C 0.024 3.976 22 N -0.918 5.918 23 Si 0.973 3.027 24 H -0.266 1.266 25 H -0.277 1.277 26 H -0.271 1.271 27 H 0.090 0.910 28 H 0.104 0.896 29 H 0.074 0.926 30 H 0.170 0.830 31 H 0.142 0.858 32 H 0.170 0.830 33 H 0.104 0.896 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.068 0.932 37 H 0.207 0.793 38 H 0.031 0.969 39 H 0.053 0.947 40 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.168 21.070 2.567 21.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.017 3.983 3 C -0.347 4.347 4 C 0.403 3.597 5 O -0.423 6.423 6 N -0.309 5.309 7 C -0.079 4.079 8 C 0.374 3.626 9 F -0.158 7.158 10 F -0.158 7.158 11 F -0.173 7.173 12 C -0.034 4.034 13 C -0.226 4.226 14 C -0.223 4.223 15 C -0.127 4.127 16 N -0.145 5.145 17 N -0.109 5.109 18 C 0.147 3.853 19 C -0.592 4.592 20 H 0.074 0.926 21 C -0.177 4.177 22 N -0.556 5.556 23 Si 0.796 3.204 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.196 1.196 27 H 0.109 0.891 28 H 0.122 0.878 29 H 0.092 0.908 30 H 0.187 0.813 31 H 0.159 0.841 32 H 0.187 0.813 33 H 0.122 0.878 34 H 0.135 0.865 35 H 0.137 0.863 36 H 0.087 0.913 37 H 0.223 0.777 38 H 0.049 0.951 39 H 0.070 0.930 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.232 19.786 2.226 20.356 hybrid contribution -0.125 -0.159 0.087 0.220 sum 4.107 19.627 2.313 20.186 Atomic orbital electron populations 1.20633 0.85375 1.04566 1.04383 1.21921 0.96026 0.86211 0.94166 1.19859 0.93015 0.93222 1.28651 1.17233 0.83198 0.83480 0.75747 1.90603 1.23638 1.82282 1.45728 1.46857 1.11767 1.09602 1.62705 1.23552 0.79811 1.08565 0.95940 1.21524 0.81553 0.75301 0.84261 1.93194 1.96039 1.31390 1.95151 1.93222 1.39278 1.92683 1.90638 1.93203 1.92644 1.78732 1.52770 1.22161 0.96359 0.82171 1.02728 1.23676 0.93064 1.04392 1.01460 1.23219 1.04639 1.01126 0.93272 1.24583 0.97272 0.91857 0.98990 1.77142 0.98670 1.13836 1.24898 1.49159 1.03130 1.07959 1.50618 1.19441 0.95372 0.72043 0.98457 1.21377 1.47843 0.98629 0.91372 0.92556 1.25736 0.93802 0.95921 1.02270 1.70002 1.44684 1.07692 1.33182 0.85330 0.79003 0.77545 0.78496 1.19078 1.20191 1.19589 0.89112 0.87778 0.90762 0.81298 0.84116 0.81317 0.87798 0.86535 0.86272 0.91302 0.77661 0.95085 0.92961 0.91692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.14 9.85 71.24 0.70 -2.44 16 2 C 0.15 6.03 7.00 42.14 0.29 6.33 16 3 C -0.33 -11.65 5.76 -20.15 -0.12 -11.76 16 4 C 0.61 18.78 7.20 86.66 0.62 19.41 16 5 O -0.54 -18.49 10.88 -4.03 -0.04 -18.53 16 6 N -0.58 -13.03 2.76 -801.69 -2.21 -15.25 16 7 C 0.05 0.80 5.11 86.38 0.44 1.24 16 8 C 0.43 8.38 2.70 71.98 0.19 8.57 16 9 F -0.18 -3.36 16.49 44.97 0.74 -2.62 16 10 F -0.18 -3.32 17.32 44.97 0.78 -2.54 16 11 F -0.19 -4.96 14.97 44.97 0.67 -4.28 16 12 C 0.07 1.23 5.85 44.99 0.26 1.49 16 13 C -0.19 -3.80 9.63 30.59 0.29 -3.50 16 14 C -0.18 -3.69 9.86 30.59 0.30 -3.39 16 15 C 0.06 2.02 8.86 85.65 0.76 2.78 16 16 N -0.33 -13.99 12.50 -56.28 -0.70 -14.70 16 17 N -0.33 -14.97 3.56 -336.70 -1.20 -16.17 16 18 C 0.27 13.39 5.97 85.63 0.51 13.90 16 19 C -0.55 -29.53 9.39 25.60 0.24 -29.29 16 20 H 0.06 3.04 7.81 -2.91 -0.02 3.02 16 21 C 0.02 1.27 5.46 84.66 0.46 1.73 16 22 N -0.92 -50.47 13.29 21.45 0.28 -50.19 16 23 Si 0.97 41.35 29.54 68.60 2.03 43.38 16 24 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 25 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 26 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 27 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 28 H 0.10 3.36 6.41 -2.38 -0.02 3.34 16 29 H 0.07 2.57 7.05 -2.39 -0.02 2.55 16 30 H 0.17 1.37 8.12 -2.39 -0.02 1.35 16 31 H 0.14 2.80 3.80 -2.38 -0.01 2.79 16 32 H 0.17 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.10 2.83 5.36 -2.40 -0.01 2.81 16 34 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.07 1.83 7.46 -2.38 -0.02 1.82 16 37 H 0.21 5.58 3.78 -2.91 -0.01 5.57 16 38 H 0.03 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.05 2.64 7.01 -2.38 -0.02 2.62 16 40 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -64.85 341.08 6.43 -58.42 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 1.11 Total: 17.39 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: 4.97 Total: 5.08 kcal Atomic # 7 Polarization: -92.46 SS G_CDS: -3.83 Total: -96.29 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.04 Total: -18.53 kcal Atomic # 9 Polarization: -11.63 SS G_CDS: 2.19 Total: -9.44 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal Total: -64.85 6.43 -58.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888415633.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.849 kcal (2) G-P(sol) polarization free energy of solvation -64.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds