Wall clock time and date at job start Tue Mar 31 2020 15:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42889 * 1 3 3 C 1.35746 * 117.00170 * 2 1 4 4 C 1.39277 * 120.84434 * 0.25154 * 3 2 1 5 5 C 1.37959 * 119.09200 * 180.29103 * 4 3 2 6 6 N 1.31975 * 120.82035 * 359.70523 * 5 4 3 7 7 C 1.31949 * 121.86644 * 0.02562 * 6 5 4 8 8 C 1.37998 * 120.81866 * 359.97438 * 7 6 5 9 9 C 1.50708 * 120.45044 * 179.97438 * 8 7 6 10 10 O 1.45195 * 109.47059 * 0.02562 * 9 8 7 11 11 C 1.34757 * 116.99661 * 180.02562 * 10 9 8 12 12 O 1.21519 * 120.00289 * 359.97438 * 11 10 9 13 13 C 1.47288 * 119.99744 * 180.02562 * 11 10 9 14 14 C 1.41343 * 126.43131 * 359.97077 * 13 11 10 15 15 N 1.30425 * 108.01629 * 180.02562 * 14 13 11 16 16 N 1.39932 * 108.91880 * 359.97438 * 15 14 13 17 17 C 1.46504 * 125.74487 * 180.02562 * 16 15 14 18 18 C 1.50699 * 109.46925 * 269.97380 * 17 16 15 19 19 H 1.08004 * 119.99967 * 0.02562 * 18 17 16 20 20 C 1.37874 * 120.00174 * 179.97438 * 18 17 16 21 21 N 1.31513 * 119.99745 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00085 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47238 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46949 * 120.00184 * 22 20 18 25 25 H 1.48500 * 109.47245 * 240.00205 * 22 20 18 26 26 C 1.34231 * 108.51244 * 0.02562 * 16 15 14 27 27 C 1.50696 * 126.29226 * 180.26391 * 26 16 15 28 28 H 1.09005 * 109.46941 * 299.99637 * 1 2 3 29 29 H 1.09002 * 109.47639 * 59.99658 * 1 2 3 30 30 H 1.09000 * 109.47314 * 179.97438 * 1 2 3 31 31 H 1.08002 * 120.45683 * 0.02562 * 4 3 2 32 32 H 1.07991 * 119.59045 * 179.72883 * 5 4 3 33 33 H 1.07998 * 119.59446 * 179.97438 * 7 6 5 34 34 H 1.09005 * 109.46870 * 240.00330 * 9 8 7 35 35 H 1.08997 * 109.46799 * 120.00306 * 9 8 7 36 36 H 1.08006 * 125.98937 * 0.02562 * 14 13 11 37 37 H 1.08994 * 109.46858 * 29.97203 * 17 16 15 38 38 H 1.08995 * 109.47357 * 149.97612 * 17 16 15 39 39 H 0.97003 * 119.99913 * 179.97438 * 21 20 18 40 40 H 1.08997 * 109.47320 * 269.71403 * 27 26 16 41 41 H 1.09001 * 109.47680 * 29.71290 * 27 26 16 42 42 H 1.09005 * 109.47158 * 149.71511 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.3040 2.3886 0.0052 5 6 1.9676 3.5981 -0.0011 6 7 3.2865 3.6457 -0.0061 7 6 4.0231 2.5510 -0.0058 8 6 3.4345 1.3028 0.0003 9 6 4.2838 0.0579 0.0000 10 8 5.6874 0.4295 -0.0068 11 6 6.5861 -0.5746 -0.0085 12 8 6.2071 -1.7292 -0.0039 13 6 8.0276 -0.2727 -0.0146 14 6 8.6160 1.0125 -0.0198 15 7 9.9117 0.8629 -0.0250 16 7 10.2106 -0.5041 -0.0227 17 6 11.5550 -1.0862 -0.0264 18 6 12.0103 -1.2899 -1.4485 19 1 11.3630 -1.0130 -2.2676 20 6 13.2534 -1.8287 -1.7039 21 7 14.0417 -2.1654 -0.7065 22 14 13.8180 -2.0805 -3.4667 23 1 12.7545 -1.6238 -4.3971 24 1 15.0557 -1.2958 -3.7069 25 1 14.0928 -3.5215 -3.6974 26 6 9.0582 -1.1924 -0.0166 27 6 8.9152 -2.6925 -0.0068 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 0.2244 2.3566 0.0098 32 1 1.4008 4.5173 -0.0015 33 1 5.0999 2.6327 -0.0105 34 1 4.0601 -0.5343 -0.8874 35 1 4.0680 -0.5293 0.8925 36 1 8.0857 1.9533 -0.0196 37 1 12.2440 -0.4123 0.4827 38 1 11.5369 -2.0458 0.4902 39 1 14.9161 -2.5448 -0.8862 40 1 8.8741 -3.0603 -1.0320 41 1 9.7699 -3.1357 0.5042 42 1 7.9980 -2.9667 0.5146 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890964345.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:05 Heat of formation + Delta-G solvation = -18.080083 kcal Electronic energy + Delta-G solvation = -26983.610478 eV Core-core repulsion = 22930.995689 eV Total energy + Delta-G solvation = -4052.614788 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -41.12259 -40.84492 -39.56617 -38.55771 -36.24813 -33.94119 -32.91912 -32.14148 -31.54212 -31.24115 -28.25983 -27.84024 -26.91614 -26.53137 -23.73118 -23.28317 -22.70436 -21.93953 -20.29159 -19.03352 -18.68164 -17.67684 -16.94867 -16.76319 -16.56545 -16.50929 -16.04158 -15.44767 -15.21540 -14.95458 -14.60640 -14.57906 -14.43083 -13.99511 -13.86614 -13.32359 -13.06990 -12.82254 -12.62519 -12.51332 -12.28731 -12.15465 -12.02868 -11.84607 -11.62863 -11.55261 -11.13062 -10.92480 -10.78093 -10.44316 -10.31755 -9.94090 -9.82794 -9.77924 -9.46334 -9.04236 -8.73541 -8.65237 -8.07900 -6.35951 -4.43823 0.75434 0.98564 1.90555 2.66635 2.68006 2.72926 3.16205 3.24373 3.28030 3.39432 3.47994 3.66454 4.11760 4.22909 4.30017 4.51149 4.58035 4.64922 4.69133 4.94404 4.98648 5.00603 5.12324 5.16649 5.22224 5.24489 5.40203 5.43269 5.58773 5.62759 5.73482 5.96314 6.03814 6.26449 6.34641 6.37616 6.68548 6.73055 6.76943 6.87396 7.12777 7.51945 7.70620 7.74039 7.74263 8.14989 8.34185 8.61813 9.23384 10.72350 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.023131 B = 0.002233 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.220604 B =12535.934845 C =12995.546524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.308 6.308 3 C 0.174 3.826 4 C -0.262 4.262 5 C 0.133 3.867 6 N -0.505 5.505 7 C 0.157 3.843 8 C -0.173 4.173 9 C 0.129 3.871 10 O -0.356 6.356 11 C 0.555 3.445 12 O -0.527 6.527 13 C -0.319 4.319 14 C 0.081 3.919 15 N -0.296 5.296 16 N -0.310 5.310 17 C 0.250 3.750 18 C -0.540 4.540 19 H 0.066 0.934 20 C 0.067 3.933 21 N -0.889 5.889 22 Si 0.908 3.092 23 H -0.271 1.271 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.173 3.827 27 C -0.096 4.096 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.105 0.895 31 H 0.141 0.859 32 H 0.158 0.842 33 H 0.176 0.824 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.186 0.814 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.269 0.731 40 H 0.087 0.913 41 H 0.077 0.923 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.094 5.129 2.838 26.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.219 6.219 3 C 0.120 3.880 4 C -0.283 4.283 5 C -0.023 4.023 6 N -0.217 5.217 7 C 0.001 3.999 8 C -0.176 4.176 9 C 0.054 3.946 10 O -0.274 6.274 11 C 0.402 3.598 12 O -0.417 6.417 13 C -0.332 4.332 14 C -0.107 4.107 15 N -0.115 5.115 16 N -0.086 5.086 17 C 0.133 3.867 18 C -0.579 4.579 19 H 0.085 0.915 20 C -0.137 4.137 21 N -0.526 5.526 22 Si 0.735 3.265 23 H -0.195 1.195 24 H -0.205 1.205 25 H -0.205 1.205 26 C 0.035 3.965 27 C -0.154 4.154 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.123 0.877 31 H 0.158 0.842 32 H 0.176 0.824 33 H 0.193 0.807 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.202 0.798 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.105 0.895 41 H 0.095 0.905 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -24.244 5.866 2.884 25.110 hybrid contribution -1.232 -1.275 -0.943 2.008 sum -25.476 4.591 1.941 25.959 Atomic orbital electron populations 1.23165 0.77528 1.04595 1.01675 1.86100 1.22104 1.26079 1.87592 1.18989 0.91143 0.85006 0.92876 1.22147 1.01455 0.92969 1.11745 1.22642 0.90499 0.96963 0.92235 1.67848 1.06931 1.32038 1.14851 1.22721 1.01177 0.85517 0.90472 1.20095 0.90624 0.97254 1.09652 1.21229 0.76792 0.93072 1.03474 1.86426 1.16505 1.39005 1.85422 1.19996 0.85608 0.82390 0.71787 1.90770 1.80999 1.21343 1.48637 1.18790 0.89103 0.93810 1.31499 1.23927 0.91232 0.97514 0.97978 1.77222 1.15367 0.95211 1.23734 1.49433 1.07805 1.03133 1.48262 1.19915 0.72915 0.94279 0.99601 1.21278 1.02095 1.43563 0.90922 0.91535 1.24926 0.95819 0.94558 0.98369 1.69921 1.09960 1.41605 1.31152 0.86261 0.78824 0.78010 0.83388 1.19493 1.20534 1.20548 1.21448 0.85817 0.95597 0.93644 1.20624 1.03870 0.86715 1.04206 0.92240 0.92240 0.87669 0.84169 0.82446 0.80749 0.89762 0.89784 0.79754 0.92273 0.92425 0.92124 0.89492 0.90451 0.88866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 9.84 101.05 0.99 1.11 16 2 O -0.31 -2.77 10.01 -18.95 -0.19 -2.96 16 3 C 0.17 1.70 6.70 -38.82 -0.26 1.44 16 4 C -0.26 -2.05 9.11 -39.30 -0.36 -2.41 16 5 C 0.13 1.15 11.17 -17.59 -0.20 0.95 16 6 N -0.51 -5.72 10.36 -13.33 -0.14 -5.86 16 7 C 0.16 1.79 10.54 -17.59 -0.19 1.61 16 8 C -0.17 -1.95 5.91 -104.33 -0.62 -2.57 16 9 C 0.13 1.59 5.43 36.01 0.20 1.78 16 10 O -0.36 -5.05 8.57 -40.65 -0.35 -5.40 16 11 C 0.55 9.37 7.95 34.41 0.27 9.64 16 12 O -0.53 -9.60 14.64 -19.28 -0.28 -9.88 16 13 C -0.32 -5.88 6.13 -105.08 -0.64 -6.52 16 14 C 0.08 1.45 11.87 -16.97 -0.20 1.25 16 15 N -0.30 -6.37 12.50 30.87 0.39 -5.99 16 16 N -0.31 -6.93 3.56 -57.76 -0.21 -7.13 16 17 C 0.25 6.11 5.97 -5.19 -0.03 6.08 16 18 C -0.54 -14.37 9.39 -34.44 -0.32 -14.69 16 19 H 0.07 1.83 7.81 -52.48 -0.41 1.42 16 20 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 21 N -0.89 -24.32 13.29 55.43 0.74 -23.58 16 22 Si 0.91 20.66 29.54 -169.99 -5.02 15.63 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 C 0.17 3.45 7.01 -81.59 -0.57 2.88 16 27 C -0.10 -1.66 9.56 36.00 0.34 -1.32 16 28 H 0.06 0.21 7.70 -51.93 -0.40 -0.19 16 29 H 0.06 0.21 7.72 -51.93 -0.40 -0.19 16 30 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.14 0.67 6.47 -52.49 -0.34 0.33 16 32 H 0.16 0.87 8.06 -52.49 -0.42 0.44 16 33 H 0.18 1.90 6.99 -52.49 -0.37 1.53 16 34 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.19 2.55 8.06 -52.48 -0.42 2.12 16 37 H 0.06 1.54 8.14 -51.93 -0.42 1.12 16 38 H 0.06 1.39 7.01 -51.93 -0.36 1.02 16 39 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 40 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 41 H 0.08 1.30 7.04 -51.93 -0.37 0.93 16 42 H 0.09 1.51 6.51 -51.93 -0.34 1.18 16 LS Contribution 368.21 15.07 5.55 5.55 Total: -1.00 -31.45 368.21 -6.27 -37.72 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -5.08 Total: 0.97 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -1.68 Total: 0.93 kcal Atomic # 7 Polarization: -43.34 SS G_CDS: 0.78 Total: -42.56 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -0.82 Total: -18.24 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.45 -6.27 -37.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890964345.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.640 kcal (2) G-P(sol) polarization free energy of solvation -31.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds