Wall clock time and date at job start Tue Mar 31 2020 15:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42889 * 1 3 3 C 1.35746 * 117.00170 * 2 1 4 4 C 1.39277 * 120.84434 * 0.25154 * 3 2 1 5 5 C 1.37959 * 119.09200 * 180.29103 * 4 3 2 6 6 N 1.31975 * 120.82035 * 359.70523 * 5 4 3 7 7 C 1.31949 * 121.86644 * 0.02562 * 6 5 4 8 8 C 1.37998 * 120.81866 * 359.97438 * 7 6 5 9 9 C 1.50708 * 120.45044 * 179.97438 * 8 7 6 10 10 O 1.45195 * 109.47059 * 0.02562 * 9 8 7 11 11 C 1.34757 * 116.99661 * 180.02562 * 10 9 8 12 12 O 1.21519 * 120.00289 * 359.97438 * 11 10 9 13 13 C 1.47288 * 119.99744 * 180.02562 * 11 10 9 14 14 C 1.41343 * 126.43131 * 359.97077 * 13 11 10 15 15 N 1.30425 * 108.01629 * 180.02562 * 14 13 11 16 16 N 1.39932 * 108.91880 * 359.97438 * 15 14 13 17 17 C 1.46504 * 125.74487 * 180.02562 * 16 15 14 18 18 C 1.50699 * 109.46925 * 269.97380 * 17 16 15 19 19 H 1.08004 * 119.99967 * 0.02562 * 18 17 16 20 20 C 1.37874 * 120.00174 * 179.97438 * 18 17 16 21 21 N 1.31513 * 119.99745 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00085 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47238 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46949 * 120.00184 * 22 20 18 25 25 H 1.48500 * 109.47245 * 240.00205 * 22 20 18 26 26 C 1.34231 * 108.51244 * 0.02562 * 16 15 14 27 27 C 1.50696 * 126.29226 * 180.26391 * 26 16 15 28 28 H 1.09005 * 109.46941 * 299.99637 * 1 2 3 29 29 H 1.09002 * 109.47639 * 59.99658 * 1 2 3 30 30 H 1.09000 * 109.47314 * 179.97438 * 1 2 3 31 31 H 1.08002 * 120.45683 * 0.02562 * 4 3 2 32 32 H 1.07991 * 119.59045 * 179.72883 * 5 4 3 33 33 H 1.07998 * 119.59446 * 179.97438 * 7 6 5 34 34 H 1.09005 * 109.46870 * 240.00330 * 9 8 7 35 35 H 1.08997 * 109.46799 * 120.00306 * 9 8 7 36 36 H 1.08006 * 125.98937 * 0.02562 * 14 13 11 37 37 H 1.08994 * 109.46858 * 29.97203 * 17 16 15 38 38 H 1.08995 * 109.47357 * 149.97612 * 17 16 15 39 39 H 0.97003 * 119.99913 * 179.97438 * 21 20 18 40 40 H 1.08997 * 109.47320 * 269.71403 * 27 26 16 41 41 H 1.09001 * 109.47680 * 29.71290 * 27 26 16 42 42 H 1.09005 * 109.47158 * 149.71511 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.3040 2.3886 0.0052 5 6 1.9676 3.5981 -0.0011 6 7 3.2865 3.6457 -0.0061 7 6 4.0231 2.5510 -0.0058 8 6 3.4345 1.3028 0.0003 9 6 4.2838 0.0579 0.0000 10 8 5.6874 0.4295 -0.0068 11 6 6.5861 -0.5746 -0.0085 12 8 6.2071 -1.7292 -0.0039 13 6 8.0276 -0.2727 -0.0146 14 6 8.6160 1.0125 -0.0198 15 7 9.9117 0.8629 -0.0250 16 7 10.2106 -0.5041 -0.0227 17 6 11.5550 -1.0862 -0.0264 18 6 12.0103 -1.2899 -1.4485 19 1 11.3630 -1.0130 -2.2676 20 6 13.2534 -1.8287 -1.7039 21 7 14.0417 -2.1654 -0.7065 22 14 13.8180 -2.0805 -3.4667 23 1 12.7545 -1.6238 -4.3971 24 1 15.0557 -1.2958 -3.7069 25 1 14.0928 -3.5215 -3.6974 26 6 9.0582 -1.1924 -0.0166 27 6 8.9152 -2.6925 -0.0068 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 0.2244 2.3566 0.0098 32 1 1.4008 4.5173 -0.0015 33 1 5.0999 2.6327 -0.0105 34 1 4.0601 -0.5343 -0.8874 35 1 4.0680 -0.5293 0.8925 36 1 8.0857 1.9533 -0.0196 37 1 12.2440 -0.4123 0.4827 38 1 11.5369 -2.0458 0.4902 39 1 14.9161 -2.5448 -0.8862 40 1 8.8741 -3.0603 -1.0320 41 1 9.7699 -3.1357 0.5042 42 1 7.9980 -2.9667 0.5146 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890964345.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:03 Heat of formation + Delta-G solvation = -36.873430 kcal Electronic energy + Delta-G solvation = -26984.425418 eV Core-core repulsion = 22930.995689 eV Total energy + Delta-G solvation = -4053.429729 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -42.43293 -41.78984 -40.83626 -39.21154 -37.50709 -35.83165 -33.98552 -33.66315 -32.82976 -32.21240 -29.60790 -28.59878 -28.36243 -27.65569 -25.47935 -24.22888 -23.74663 -22.98255 -21.72717 -20.51736 -19.39115 -18.94647 -18.75048 -17.96461 -17.56760 -17.51074 -16.93089 -16.81808 -16.35576 -16.03795 -15.90516 -15.86520 -15.21504 -15.07871 -14.90669 -14.64261 -14.38818 -14.20735 -14.04004 -13.71670 -13.59801 -13.44054 -13.14217 -13.11113 -12.98871 -12.70941 -12.51938 -12.33584 -12.21670 -11.92642 -11.84337 -11.83628 -11.30662 -10.76035 -10.52835 -10.32183 -10.13099 -9.80570 -9.64975 -8.38220 -6.54038 0.03855 0.27456 0.42831 1.19790 1.36497 1.37011 1.40148 1.52046 1.85462 2.12629 2.23822 2.32975 2.75686 2.94577 3.38475 3.63196 3.66909 3.73088 3.88719 3.89744 4.02279 4.10568 4.18405 4.25717 4.34489 4.38361 4.45076 4.51642 4.60483 4.70315 4.76330 4.77073 4.82533 4.90532 4.99133 5.02172 5.12460 5.38781 5.49401 5.56202 5.61787 5.74044 5.97177 6.15198 6.54380 6.72609 6.86475 7.02660 7.17109 8.70078 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.023131 B = 0.002233 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.220604 B =12535.934845 C =12995.546524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.327 6.327 3 C 0.169 3.831 4 C -0.252 4.252 5 C 0.130 3.870 6 N -0.531 5.531 7 C 0.144 3.856 8 C -0.192 4.192 9 C 0.133 3.867 10 O -0.347 6.347 11 C 0.562 3.438 12 O -0.540 6.540 13 C -0.321 4.321 14 C 0.099 3.901 15 N -0.335 5.335 16 N -0.333 5.333 17 C 0.265 3.735 18 C -0.555 4.555 19 H 0.052 0.948 20 C 0.025 3.975 21 N -0.916 5.916 22 Si 0.971 3.029 23 H -0.273 1.273 24 H -0.274 1.274 25 H -0.268 1.268 26 C 0.161 3.839 27 C -0.091 4.091 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.119 0.881 31 H 0.175 0.825 32 H 0.190 0.810 33 H 0.171 0.829 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.225 0.775 37 H 0.034 0.966 38 H 0.056 0.944 39 H 0.274 0.726 40 H 0.090 0.910 41 H 0.078 0.922 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.742 5.619 2.188 29.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.238 6.238 3 C 0.115 3.885 4 C -0.272 4.272 5 C -0.026 4.026 6 N -0.243 5.243 7 C -0.011 4.011 8 C -0.195 4.195 9 C 0.059 3.941 10 O -0.264 6.264 11 C 0.410 3.590 12 O -0.432 6.432 13 C -0.334 4.334 14 C -0.089 4.089 15 N -0.154 5.154 16 N -0.109 5.109 17 C 0.147 3.853 18 C -0.593 4.593 19 H 0.071 0.929 20 C -0.177 4.177 21 N -0.554 5.554 22 Si 0.795 3.205 23 H -0.197 1.197 24 H -0.200 1.200 25 H -0.193 1.193 26 C 0.025 3.975 27 C -0.149 4.149 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.137 0.863 31 H 0.192 0.808 32 H 0.207 0.793 33 H 0.188 0.812 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.242 0.758 37 H 0.052 0.948 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.108 0.892 41 H 0.096 0.904 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -26.926 6.360 2.244 27.758 hybrid contribution -0.649 -1.370 -0.699 1.669 sum -27.575 4.990 1.544 28.065 Atomic orbital electron populations 1.23497 0.75280 1.06117 1.03065 1.86084 1.24477 1.25902 1.87363 1.19130 0.90810 0.86082 0.92450 1.22478 1.03054 0.91748 1.09931 1.23227 0.89824 0.98660 0.90876 1.67850 1.08432 1.32064 1.15968 1.22688 1.01295 0.85846 0.91285 1.20035 0.91448 0.96459 1.11558 1.21301 0.75477 0.94009 1.03312 1.86409 1.17375 1.37828 1.84738 1.19700 0.85384 0.82509 0.71455 1.90761 1.81216 1.22013 1.49222 1.18992 0.89888 0.93753 1.30764 1.24569 0.90166 0.98878 0.95259 1.77178 1.17307 0.95066 1.25840 1.49187 1.07526 1.03779 1.50454 1.19465 0.73938 0.93586 0.98322 1.21408 1.02415 1.43972 0.91493 0.92950 1.25708 0.95728 0.94046 1.02220 1.69996 1.10395 1.41974 1.32995 0.85303 0.78164 0.78440 0.78563 1.19748 1.19975 1.19306 1.21953 0.85525 0.96893 0.93160 1.20660 1.04437 0.85271 1.04518 0.90747 0.90829 0.86298 0.80758 0.79337 0.81164 0.90076 0.89865 0.75848 0.94758 0.92592 0.91638 0.89204 0.90354 0.87704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.84 113.37 1.12 1.21 16 2 O -0.33 -5.28 10.01 -90.71 -0.91 -6.19 16 3 C 0.17 3.01 6.70 22.76 0.15 3.16 16 4 C -0.25 -3.18 9.11 22.45 0.20 -2.97 16 5 C 0.13 1.91 11.17 84.61 0.95 2.85 16 6 N -0.53 -11.33 10.36 -196.08 -2.03 -13.36 16 7 C 0.14 3.20 10.54 84.62 0.89 4.09 16 8 C -0.19 -4.15 5.91 -19.68 -0.12 -4.27 16 9 C 0.13 3.21 5.43 71.24 0.39 3.59 16 10 O -0.35 -9.56 8.57 -56.68 -0.49 -10.04 16 11 C 0.56 18.56 7.95 70.20 0.56 19.12 16 12 O -0.54 -19.30 14.64 19.77 0.29 -19.01 16 13 C -0.32 -11.70 6.13 -20.16 -0.12 -11.83 16 14 C 0.10 3.47 11.87 85.67 1.02 4.48 16 15 N -0.33 -14.60 12.50 -56.25 -0.70 -15.30 16 16 N -0.33 -15.24 3.56 -336.66 -1.20 -16.44 16 17 C 0.27 13.45 5.97 85.63 0.51 13.96 16 18 C -0.55 -30.18 9.39 25.60 0.24 -29.94 16 19 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 20 C 0.02 1.31 5.46 84.65 0.46 1.77 16 21 N -0.92 -50.62 13.29 21.45 0.28 -50.34 16 22 Si 0.97 42.37 29.54 68.60 2.03 44.40 16 23 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 24 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 25 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 26 C 0.16 6.50 7.01 42.16 0.30 6.80 16 27 C -0.09 -3.16 9.56 71.23 0.68 -2.48 16 28 H 0.07 0.27 7.70 -2.38 -0.02 0.25 16 29 H 0.07 0.28 7.72 -2.39 -0.02 0.26 16 30 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.18 0.90 6.47 -2.91 -0.02 0.88 16 32 H 0.19 1.41 8.06 -2.92 -0.02 1.39 16 33 H 0.17 3.67 6.99 -2.91 -0.02 3.65 16 34 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 35 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.23 5.76 8.06 -2.91 -0.02 5.73 16 37 H 0.03 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.06 2.80 7.01 -2.39 -0.02 2.79 16 39 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 40 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 41 H 0.08 2.67 7.04 -2.39 -0.02 2.65 16 42 H 0.10 3.36 6.51 -2.38 -0.02 3.35 16 Total: -1.00 -68.40 368.21 5.55 -62.84 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: 1.06 Total: 13.88 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: 7.22 Total: 9.56 kcal Atomic # 7 Polarization: -91.79 SS G_CDS: -3.65 Total: -95.44 kcal Atomic # 8 Polarization: -34.13 SS G_CDS: -1.10 Total: -35.24 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Total: -68.40 5.55 -62.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890964345.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.968 kcal (2) G-P(sol) polarization free energy of solvation -68.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds