Wall clock time and date at job start Tue Mar 31 2020 15:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38126 * 126.29541 * 2 1 4 4 C 1.47286 * 126.42448 * 0.02562 * 3 2 1 5 5 O 1.21522 * 120.00586 * 359.97438 * 4 3 2 6 6 O 1.34762 * 119.99757 * 180.02562 * 4 3 2 7 7 C 1.45196 * 116.99730 * 180.02562 * 6 4 3 8 8 C 1.50702 * 109.46876 * 180.02562 * 7 6 4 9 9 C 1.34325 * 126.16691 * 359.93658 * 8 7 6 10 10 O 1.34752 * 107.11720 * 180.02562 * 9 8 7 11 11 C 1.33974 * 107.75151 * 0.02562 * 10 9 8 12 12 C 1.50699 * 125.61592 * 180.02562 * 11 10 9 13 13 C 1.52995 * 117.50090 * 8.72239 * 12 11 10 14 14 C 1.53005 * 117.49695 * 300.06048 * 12 11 10 15 15 N 1.30250 * 108.76338 * 0.02562 * 11 10 9 16 16 C 1.41342 * 107.14477 * 180.28442 * 3 2 1 17 17 N 1.30428 * 108.01464 * 359.55536 * 16 3 2 18 18 N 1.34224 * 126.29552 * 180.02562 * 2 1 3 19 19 C 1.46497 * 125.74496 * 359.94689 * 18 2 1 20 20 C 1.50700 * 109.47292 * 89.99472 * 19 18 2 21 21 H 1.08005 * 119.99632 * 0.02562 * 20 19 18 22 22 C 1.37876 * 120.00020 * 180.02562 * 20 19 18 23 23 N 1.31509 * 119.99997 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99768 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47560 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47251 * 119.99881 * 24 22 20 27 27 H 1.48498 * 109.47295 * 239.99942 * 24 22 20 28 28 H 1.08998 * 109.47458 * 89.97351 * 1 2 3 29 29 H 1.08998 * 109.47104 * 209.97646 * 1 2 3 30 30 H 1.09004 * 109.47345 * 329.97213 * 1 2 3 31 31 H 1.09000 * 109.47907 * 60.00074 * 7 6 4 32 32 H 1.09006 * 109.47352 * 299.99660 * 7 6 4 33 33 H 1.08003 * 126.44387 * 0.05716 * 9 8 7 34 34 H 1.09003 * 115.54843 * 154.39520 * 12 11 10 35 35 H 1.09003 * 117.50248 * 0.02562 * 13 12 11 36 36 H 1.09004 * 117.50067 * 145.02842 * 13 12 11 37 37 H 1.09003 * 117.49434 * 214.97880 * 14 12 11 38 38 H 1.08997 * 117.50232 * 359.97438 * 14 12 11 39 39 H 1.08002 * 125.99126 * 179.73857 * 16 3 2 40 40 H 1.08996 * 109.47366 * 209.99558 * 19 18 2 41 41 H 1.08999 * 109.46868 * 329.99667 * 19 18 2 42 42 H 0.97006 * 120.00129 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.1133 0.0000 4 6 1.8871 2.5196 0.0005 5 8 0.7017 2.7873 0.0006 6 8 2.8014 3.5097 -0.0001 7 6 2.2981 4.8716 0.0011 8 6 3.4568 5.8353 -0.0004 9 6 4.7597 5.5084 -0.0013 10 8 5.4577 6.6610 -0.0020 11 6 4.5780 7.6714 -0.0009 12 6 4.9256 9.1377 -0.0017 13 6 6.3934 9.5157 -0.2097 14 6 5.7517 9.6685 1.1717 15 7 3.3727 7.1775 0.0009 16 6 3.6598 0.6496 -0.0067 17 7 3.6340 -0.6544 -0.0008 18 7 2.3015 -1.0818 -0.0005 19 6 1.8498 -2.4754 0.0000 20 6 1.6937 -2.9534 -1.4206 21 1 1.9098 -2.2859 -2.2418 22 6 1.2750 -4.2428 -1.6721 23 7 1.0114 -5.0553 -0.6722 24 14 1.0822 -4.8354 -3.4331 25 1 1.4392 -3.7374 -4.3669 26 1 1.9806 -5.9946 -3.6664 27 1 -0.3258 -5.2457 -3.6660 28 1 -0.3634 0.0005 -1.0276 29 1 -0.3633 -0.8902 0.5135 30 1 -0.3634 0.8898 0.5143 31 1 1.6912 5.0341 0.8918 32 1 1.6892 5.0348 -0.8882 33 1 5.1705 4.5096 -0.0019 34 1 4.1705 9.7996 -0.4257 35 1 7.1078 8.7038 -0.3464 36 1 6.6041 10.4265 -0.7702 37 1 5.5404 10.6798 1.5192 38 1 6.0434 8.9573 1.9444 39 1 4.5460 1.2669 -0.0124 40 1 2.5847 -3.0954 0.5132 41 1 0.8916 -2.5465 0.5146 42 1 0.7171 -5.9626 -0.8491 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893135400.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:12 Heat of formation + Delta-G solvation = 33.460400 kcal Electronic energy + Delta-G solvation = -26563.523402 eV Core-core repulsion = 22513.143577 eV Total energy + Delta-G solvation = -4050.379825 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -43.64999 -40.95624 -39.69398 -37.69283 -36.41098 -35.10868 -33.97070 -32.21297 -31.46068 -31.01115 -28.09385 -27.01648 -26.62788 -24.64602 -23.66416 -22.98428 -22.50534 -21.84096 -20.74507 -20.14115 -19.01194 -17.73440 -17.38706 -17.05776 -16.83136 -16.29034 -16.20665 -16.06113 -15.36886 -15.09930 -14.63779 -14.45144 -14.23393 -13.75749 -13.41105 -13.28412 -12.88028 -12.79281 -12.53791 -12.21114 -12.16844 -12.11234 -11.88777 -11.83152 -11.59017 -11.28220 -11.15389 -11.12631 -10.95039 -10.84475 -10.56342 -10.49092 -10.36051 -9.97614 -9.89790 -8.92812 -8.76259 -8.70445 -8.13760 -6.38714 -4.46818 1.14116 1.84330 2.23701 2.39596 2.47585 2.65561 3.14152 3.20992 3.22939 3.28884 3.34116 3.59595 3.64325 4.19753 4.20394 4.31664 4.36849 4.70877 4.79812 4.95657 5.03050 5.08838 5.09778 5.19557 5.20125 5.29399 5.39352 5.44713 5.53635 5.55309 5.63931 5.67185 5.86339 5.89331 6.00552 6.29241 6.33684 6.62035 6.71616 6.83640 7.07047 7.42495 7.48122 7.66478 7.70936 8.07418 8.28156 8.58646 9.20569 10.69568 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.028289 B = 0.001952 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.535625 B =14343.634326 C =14607.137737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.175 3.825 3 C -0.319 4.319 4 C 0.557 3.443 5 O -0.524 6.524 6 O -0.359 6.359 7 C 0.157 3.843 8 C -0.021 4.021 9 C -0.044 4.044 10 O -0.201 6.201 11 C 0.221 3.779 12 C -0.071 4.071 13 C -0.163 4.163 14 C -0.158 4.158 15 N -0.468 5.468 16 C 0.080 3.920 17 N -0.296 5.296 18 N -0.309 5.309 19 C 0.250 3.750 20 C -0.541 4.541 21 H 0.067 0.933 22 C 0.068 3.932 23 N -0.888 5.888 24 Si 0.909 3.091 25 H -0.271 1.271 26 H -0.280 1.280 27 H -0.279 1.279 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.226 0.774 34 H 0.146 0.854 35 H 0.104 0.896 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.101 0.899 39 H 0.184 0.816 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.313 25.042 3.076 26.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.036 3.964 3 C -0.332 4.332 4 C 0.404 3.596 5 O -0.414 6.414 6 O -0.276 6.276 7 C 0.082 3.918 8 C -0.140 4.140 9 C -0.114 4.114 10 O -0.087 6.087 11 C 0.014 3.986 12 C -0.090 4.090 13 C -0.200 4.200 14 C -0.196 4.196 15 N -0.198 5.198 16 C -0.107 4.107 17 N -0.115 5.115 18 N -0.085 5.085 19 C 0.133 3.867 20 C -0.580 4.580 21 H 0.085 0.915 22 C -0.136 4.136 23 N -0.526 5.526 24 Si 0.735 3.265 25 H -0.195 1.195 26 H -0.205 1.205 27 H -0.205 1.205 28 H 0.106 0.894 29 H 0.096 0.904 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.242 0.758 34 H 0.164 0.836 35 H 0.123 0.877 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.119 0.881 39 H 0.201 0.799 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.083 24.022 3.133 25.240 hybrid contribution -0.077 -0.231 -0.971 1.001 sum 7.006 23.791 2.162 24.895 Atomic orbital electron populations 1.20636 0.86478 1.04103 1.04269 1.21458 0.95016 0.86398 0.93496 1.18759 0.93829 0.88969 1.31645 1.19973 0.83199 0.84573 0.71849 1.90784 1.17819 1.84332 1.48502 1.86375 1.40515 1.15138 1.85568 1.20554 0.90936 0.76176 1.04096 1.21186 0.94664 0.90585 1.07583 1.24909 0.91169 0.89533 1.05787 1.84430 1.39369 1.15114 1.69814 1.25027 0.81781 0.91175 1.00607 1.20220 0.97085 0.84765 1.06937 1.23137 0.93209 1.04075 0.99602 1.23158 1.01614 1.03078 0.91775 1.70129 1.23419 1.07502 1.18794 1.23891 0.96530 0.92171 0.98138 1.77221 0.98299 1.12303 1.23676 1.49436 1.02587 1.08332 1.48173 1.19930 0.96573 0.70582 0.99649 1.21274 1.47556 0.98248 0.90902 0.91525 1.24923 0.94369 0.95965 0.98372 1.69917 1.44370 1.07197 1.31092 0.86258 0.77994 0.78880 0.83336 1.19503 1.20530 1.20516 0.89420 0.90393 0.88812 0.89207 0.89188 0.75791 0.83629 0.87718 0.87165 0.87089 0.88080 0.79887 0.92255 0.92377 0.92094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.65 9.57 36.00 0.34 -1.31 16 2 C 0.17 3.42 7.01 -81.59 -0.57 2.85 16 3 C -0.32 -5.75 6.13 -105.08 -0.64 -6.39 16 4 C 0.56 9.20 7.95 34.41 0.27 9.48 16 5 O -0.52 -9.41 14.63 -19.28 -0.28 -9.69 16 6 O -0.36 -4.96 9.36 -40.66 -0.38 -5.34 16 7 C 0.16 1.97 6.10 36.01 0.22 2.19 16 8 C -0.02 -0.26 7.09 -82.81 -0.59 -0.85 16 9 C -0.04 -0.47 11.50 29.35 0.34 -0.13 16 10 O -0.20 -2.15 10.47 5.34 0.06 -2.10 16 11 C 0.22 2.34 7.83 -12.95 -0.10 2.24 16 12 C -0.07 -0.49 6.33 -91.77 -0.58 -1.07 16 13 C -0.16 -0.79 10.17 -26.69 -0.27 -1.06 16 14 C -0.16 -0.79 10.24 -26.69 -0.27 -1.06 16 15 N -0.47 -5.93 11.29 -7.36 -0.08 -6.01 16 16 C 0.08 1.39 11.87 -16.97 -0.20 1.19 16 17 N -0.30 -6.23 12.50 30.87 0.39 -5.84 16 18 N -0.31 -6.79 3.56 -57.77 -0.21 -6.99 16 19 C 0.25 6.03 5.97 -5.20 -0.03 6.00 16 20 C -0.54 -14.26 9.39 -34.44 -0.32 -14.59 16 21 H 0.07 1.81 7.81 -52.48 -0.41 1.40 16 22 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 23 N -0.89 -24.11 13.29 55.43 0.74 -23.38 16 24 Si 0.91 20.50 29.54 -169.99 -5.02 15.48 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 28 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 29 H 0.08 1.29 7.05 -51.93 -0.37 0.92 16 30 H 0.09 1.50 6.51 -51.93 -0.34 1.16 16 31 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.23 1.84 7.85 -52.48 -0.41 1.43 16 34 H 0.15 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.10 0.57 7.95 -51.93 -0.41 0.16 16 36 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.18 2.39 8.06 -52.49 -0.42 1.96 16 40 H 0.06 1.52 8.14 -51.93 -0.42 1.10 16 41 H 0.06 1.38 7.01 -51.93 -0.36 1.02 16 42 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 374.22 15.07 5.64 5.64 Total: -1.00 -31.02 374.22 -6.90 -37.92 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -5.24 Total: 1.14 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -2.51 Total: -0.81 kcal Atomic # 7 Polarization: -43.06 SS G_CDS: 0.83 Total: -42.23 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.61 Total: -17.13 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.02 -6.90 -37.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893135400.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.384 kcal (2) G-P(sol) polarization free energy of solvation -31.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds