Wall clock time and date at job start Tue Mar 31 2020 15:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38126 * 126.29541 * 2 1 4 4 C 1.47286 * 126.42448 * 0.02562 * 3 2 1 5 5 O 1.21522 * 120.00586 * 359.97438 * 4 3 2 6 6 O 1.34762 * 119.99757 * 180.02562 * 4 3 2 7 7 C 1.45196 * 116.99730 * 180.02562 * 6 4 3 8 8 C 1.50702 * 109.46876 * 180.02562 * 7 6 4 9 9 C 1.34325 * 126.16691 * 359.93658 * 8 7 6 10 10 O 1.34752 * 107.11720 * 180.02562 * 9 8 7 11 11 C 1.33974 * 107.75151 * 0.02562 * 10 9 8 12 12 C 1.50699 * 125.61592 * 180.02562 * 11 10 9 13 13 C 1.52995 * 117.50090 * 8.72239 * 12 11 10 14 14 C 1.53005 * 117.49695 * 300.06048 * 12 11 10 15 15 N 1.30250 * 108.76338 * 0.02562 * 11 10 9 16 16 C 1.41342 * 107.14477 * 180.28442 * 3 2 1 17 17 N 1.30428 * 108.01464 * 359.55536 * 16 3 2 18 18 N 1.34224 * 126.29552 * 180.02562 * 2 1 3 19 19 C 1.46497 * 125.74496 * 359.94689 * 18 2 1 20 20 C 1.50700 * 109.47292 * 89.99472 * 19 18 2 21 21 H 1.08005 * 119.99632 * 0.02562 * 20 19 18 22 22 C 1.37876 * 120.00020 * 180.02562 * 20 19 18 23 23 N 1.31509 * 119.99997 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99768 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47560 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47251 * 119.99881 * 24 22 20 27 27 H 1.48498 * 109.47295 * 239.99942 * 24 22 20 28 28 H 1.08998 * 109.47458 * 89.97351 * 1 2 3 29 29 H 1.08998 * 109.47104 * 209.97646 * 1 2 3 30 30 H 1.09004 * 109.47345 * 329.97213 * 1 2 3 31 31 H 1.09000 * 109.47907 * 60.00074 * 7 6 4 32 32 H 1.09006 * 109.47352 * 299.99660 * 7 6 4 33 33 H 1.08003 * 126.44387 * 0.05716 * 9 8 7 34 34 H 1.09003 * 115.54843 * 154.39520 * 12 11 10 35 35 H 1.09003 * 117.50248 * 0.02562 * 13 12 11 36 36 H 1.09004 * 117.50067 * 145.02842 * 13 12 11 37 37 H 1.09003 * 117.49434 * 214.97880 * 14 12 11 38 38 H 1.08997 * 117.50232 * 359.97438 * 14 12 11 39 39 H 1.08002 * 125.99126 * 179.73857 * 16 3 2 40 40 H 1.08996 * 109.47366 * 209.99558 * 19 18 2 41 41 H 1.08999 * 109.46868 * 329.99667 * 19 18 2 42 42 H 0.97006 * 120.00129 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.1133 0.0000 4 6 1.8871 2.5196 0.0005 5 8 0.7017 2.7873 0.0006 6 8 2.8014 3.5097 -0.0001 7 6 2.2981 4.8716 0.0011 8 6 3.4568 5.8353 -0.0004 9 6 4.7597 5.5084 -0.0013 10 8 5.4577 6.6610 -0.0020 11 6 4.5780 7.6714 -0.0009 12 6 4.9256 9.1377 -0.0017 13 6 6.3934 9.5157 -0.2097 14 6 5.7517 9.6685 1.1717 15 7 3.3727 7.1775 0.0009 16 6 3.6598 0.6496 -0.0067 17 7 3.6340 -0.6544 -0.0008 18 7 2.3015 -1.0818 -0.0005 19 6 1.8498 -2.4754 0.0000 20 6 1.6937 -2.9534 -1.4206 21 1 1.9098 -2.2859 -2.2418 22 6 1.2750 -4.2428 -1.6721 23 7 1.0114 -5.0553 -0.6722 24 14 1.0822 -4.8354 -3.4331 25 1 1.4392 -3.7374 -4.3669 26 1 1.9806 -5.9946 -3.6664 27 1 -0.3258 -5.2457 -3.6660 28 1 -0.3634 0.0005 -1.0276 29 1 -0.3633 -0.8902 0.5135 30 1 -0.3634 0.8898 0.5143 31 1 1.6912 5.0341 0.8918 32 1 1.6892 5.0348 -0.8882 33 1 5.1705 4.5096 -0.0019 34 1 4.1705 9.7996 -0.4257 35 1 7.1078 8.7038 -0.3464 36 1 6.6041 10.4265 -0.7702 37 1 5.5404 10.6798 1.5192 38 1 6.0434 8.9573 1.9444 39 1 4.5460 1.2669 -0.0124 40 1 2.5847 -3.0954 0.5132 41 1 0.8916 -2.5465 0.5146 42 1 0.7171 -5.9626 -0.8491 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893135400.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:09 Heat of formation + Delta-G solvation = 14.529791 kcal Electronic energy + Delta-G solvation = -26564.344295 eV Core-core repulsion = 22513.143577 eV Total energy + Delta-G solvation = -4051.200718 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 2.30 seconds Orbital eigenvalues (eV) -44.47311 -42.44399 -40.99724 -38.15947 -37.61993 -36.02471 -35.82811 -33.91561 -32.91858 -32.01973 -29.57827 -28.52925 -27.84268 -25.50481 -25.28221 -23.90305 -23.34890 -22.67157 -21.94966 -21.15596 -20.52566 -18.94362 -18.74883 -18.39101 -17.95197 -17.50426 -17.31718 -16.91796 -16.65004 -16.33524 -16.02206 -15.83656 -15.17034 -14.96554 -14.68283 -14.65297 -14.25417 -14.15081 -13.72477 -13.60315 -13.42557 -13.20670 -13.14426 -13.00155 -12.71815 -12.65315 -12.44524 -12.34331 -12.10337 -11.87837 -11.84672 -11.73362 -11.50721 -11.47309 -11.34518 -10.76722 -10.33570 -9.74074 -9.66680 -8.38931 -6.54766 0.34976 0.40205 1.17206 1.25204 1.36457 1.39182 1.39904 1.50676 1.66096 1.76703 2.21136 2.32205 2.76879 2.93619 2.95289 3.51923 3.65295 3.69929 3.75061 3.91746 3.94459 3.98181 4.13760 4.18378 4.19489 4.36902 4.53663 4.59329 4.64624 4.75945 4.76954 4.82224 4.88166 4.92382 4.96867 5.06964 5.09238 5.11638 5.20313 5.33541 5.48639 5.60220 5.73260 5.95379 6.53627 6.58885 6.70719 6.83168 7.16510 8.69309 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.028289 B = 0.001952 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.535625 B =14343.634326 C =14607.137737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.162 3.838 3 C -0.320 4.320 4 C 0.565 3.435 5 O -0.539 6.539 6 O -0.346 6.346 7 C 0.162 3.838 8 C -0.044 4.044 9 C -0.040 4.040 10 O -0.204 6.204 11 C 0.223 3.777 12 C -0.094 4.094 13 C -0.150 4.150 14 C -0.149 4.149 15 N -0.500 5.500 16 C 0.099 3.901 17 N -0.335 5.335 18 N -0.333 5.333 19 C 0.265 3.735 20 C -0.556 4.556 21 H 0.053 0.947 22 C 0.025 3.975 23 N -0.915 5.915 24 Si 0.971 3.029 25 H -0.273 1.273 26 H -0.275 1.275 27 H -0.269 1.269 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.248 0.752 34 H 0.157 0.843 35 H 0.097 0.903 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.092 0.908 39 H 0.228 0.772 40 H 0.035 0.965 41 H 0.056 0.944 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.230 27.003 2.454 28.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.025 3.975 3 C -0.333 4.333 4 C 0.412 3.588 5 O -0.430 6.430 6 O -0.262 6.262 7 C 0.088 3.912 8 C -0.162 4.162 9 C -0.110 4.110 10 O -0.090 6.090 11 C 0.017 3.983 12 C -0.113 4.113 13 C -0.188 4.188 14 C -0.187 4.187 15 N -0.230 5.230 16 C -0.088 4.088 17 N -0.154 5.154 18 N -0.109 5.109 19 C 0.147 3.853 20 C -0.594 4.594 21 H 0.071 0.929 22 C -0.176 4.176 23 N -0.553 5.553 24 Si 0.795 3.205 25 H -0.197 1.197 26 H -0.200 1.200 27 H -0.194 1.194 28 H 0.108 0.892 29 H 0.096 0.904 30 H 0.123 0.877 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.264 0.736 34 H 0.174 0.826 35 H 0.116 0.884 36 H 0.151 0.849 37 H 0.151 0.849 38 H 0.111 0.889 39 H 0.245 0.755 40 H 0.053 0.947 41 H 0.074 0.926 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.002 26.005 2.520 27.324 hybrid contribution -0.294 -0.665 -0.732 1.032 sum 7.708 25.340 1.788 26.547 Atomic orbital electron populations 1.20668 0.85184 1.04629 1.04524 1.21948 0.96087 0.86357 0.93077 1.18938 0.93974 0.89483 1.30941 1.19671 0.83117 0.84491 0.71476 1.90781 1.18537 1.84572 1.49092 1.86336 1.39479 1.15409 1.84947 1.20561 0.91302 0.75263 1.04115 1.21184 0.95102 0.90659 1.09251 1.25326 0.90719 0.90359 1.04619 1.84453 1.39459 1.15270 1.69835 1.25800 0.81280 0.92422 0.98835 1.20521 0.98732 0.82830 1.09226 1.23242 0.91308 1.04596 0.99612 1.23265 1.00263 1.03801 0.91381 1.70105 1.24692 1.07800 1.20435 1.24597 0.97742 0.91240 0.95199 1.77181 0.98142 1.14240 1.25804 1.49174 1.03420 1.07875 1.50406 1.19468 0.95638 0.71928 0.98313 1.21415 1.47896 0.98528 0.91525 0.92879 1.25695 0.93846 0.95960 1.02137 1.69992 1.44790 1.07628 1.32910 0.85310 0.78409 0.78178 0.78618 1.19726 1.19991 1.19387 0.89198 0.90373 0.87680 0.89134 0.89339 0.73576 0.82568 0.88440 0.84854 0.84877 0.88925 0.75534 0.94709 0.92620 0.91644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.13 9.57 71.23 0.68 -2.45 16 2 C 0.16 6.34 7.01 42.17 0.30 6.64 16 3 C -0.32 -11.16 6.13 -20.16 -0.12 -11.29 16 4 C 0.57 17.82 7.95 70.20 0.56 18.38 16 5 O -0.54 -18.68 14.63 19.77 0.29 -18.40 16 6 O -0.35 -8.90 9.36 -56.73 -0.53 -9.43 16 7 C 0.16 3.90 6.10 71.24 0.43 4.33 16 8 C -0.04 -1.03 7.09 41.26 0.29 -0.74 16 9 C -0.04 -0.79 11.50 66.93 0.77 -0.02 16 10 O -0.20 -4.10 10.47 -3.79 -0.04 -4.14 16 11 C 0.22 4.50 7.83 88.34 0.69 5.19 16 12 C -0.09 -1.13 6.33 -11.54 -0.07 -1.21 16 13 C -0.15 -1.11 10.17 30.62 0.31 -0.79 16 14 C -0.15 -1.16 10.24 30.62 0.31 -0.85 16 15 N -0.50 -12.36 11.29 -291.98 -3.30 -15.65 16 16 C 0.10 3.29 11.87 85.66 1.02 4.31 16 17 N -0.33 -14.04 12.50 -56.25 -0.70 -14.74 16 18 N -0.33 -14.82 3.56 -336.67 -1.20 -16.02 16 19 C 0.26 13.21 5.97 85.63 0.51 13.72 16 20 C -0.56 -29.81 9.39 25.60 0.24 -29.56 16 21 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 22 C 0.03 1.33 5.46 84.66 0.46 1.79 16 23 N -0.92 -50.12 13.29 21.45 0.28 -49.83 16 24 Si 0.97 41.93 29.54 68.60 2.03 43.96 16 25 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 26 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 27 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 28 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 29 H 0.08 2.62 7.05 -2.39 -0.02 2.60 16 30 H 0.10 3.30 6.51 -2.38 -0.02 3.28 16 31 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 33 H 0.25 3.42 7.85 -2.91 -0.02 3.39 16 34 H 0.16 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.10 0.88 7.95 -2.39 -0.02 0.87 16 36 H 0.13 0.37 8.14 -2.38 -0.02 0.35 16 37 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.23 5.15 8.06 -2.91 -0.02 5.13 16 40 H 0.03 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.06 2.75 7.01 -2.39 -0.02 2.73 16 42 H 0.27 14.03 8.31 -92.70 -0.77 13.26 16 Total: -1.00 -67.01 374.22 4.27 -62.74 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: 1.06 Total: 14.06 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: 6.38 Total: 7.45 kcal Atomic # 7 Polarization: -91.34 SS G_CDS: -4.91 Total: -96.25 kcal Atomic # 8 Polarization: -31.68 SS G_CDS: -0.28 Total: -31.96 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -67.01 4.27 -62.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893135400.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.266 kcal (2) G-P(sol) polarization free energy of solvation -67.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.30 seconds