Wall clock time and date at job start Tue Mar 31 2020 15:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38125 * 126.30096 * 2 1 4 4 C 1.47288 * 126.42228 * 359.69722 * 3 2 1 5 5 O 1.21519 * 119.99977 * 0.02562 * 4 3 2 6 6 O 1.34757 * 119.99732 * 179.97438 * 4 3 2 7 7 C 1.45195 * 116.99649 * 180.02562 * 6 4 3 8 8 C 1.50708 * 109.47044 * 180.02562 * 7 6 4 9 9 C 1.35448 * 126.77474 * 89.70409 * 8 7 6 10 10 C 1.41385 * 103.98398 * 179.91197 * 9 8 7 11 11 C 1.50701 * 126.80283 * 180.09587 * 10 9 8 12 12 C 1.53002 * 117.49811 * 344.03921 * 11 10 9 13 13 C 1.53001 * 117.49721 * 275.38240 * 11 10 9 14 14 N 1.30171 * 106.39496 * 0.36155 * 10 9 8 15 15 O 1.20925 * 111.60627 * 359.76562 * 14 10 9 16 16 C 1.41343 * 107.14628 * 179.73461 * 3 2 1 17 17 N 1.30425 * 108.01629 * 0.02562 * 16 3 2 18 18 N 1.34231 * 126.29226 * 179.68772 * 2 1 3 19 19 C 1.46504 * 125.74248 * 0.26402 * 18 2 1 20 20 C 1.50695 * 109.47256 * 90.00154 * 19 18 2 21 21 H 1.08008 * 119.99752 * 359.97438 * 20 19 18 22 22 C 1.37872 * 120.00257 * 179.97438 * 20 19 18 23 23 N 1.31521 * 119.99759 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00293 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47538 * 89.99661 * 24 22 20 26 26 H 1.48499 * 109.47278 * 210.00083 * 24 22 20 27 27 H 1.48507 * 109.47166 * 329.99709 * 24 22 20 28 28 H 1.09007 * 109.47149 * 90.02631 * 1 2 3 29 29 H 1.09001 * 109.47680 * 210.02517 * 1 2 3 30 30 H 1.09005 * 109.47158 * 330.02739 * 1 2 3 31 31 H 1.09002 * 109.47316 * 299.99970 * 7 6 4 32 32 H 1.08998 * 109.47780 * 60.00004 * 7 6 4 33 33 H 1.07999 * 128.00842 * 0.02562 * 9 8 7 34 34 H 1.08994 * 115.54747 * 129.71095 * 11 10 9 35 35 H 1.09003 * 117.49753 * 0.02562 * 12 11 10 36 36 H 1.08999 * 117.49713 * 145.01911 * 12 11 10 37 37 H 1.09000 * 117.49242 * 214.98135 * 13 11 10 38 38 H 1.08994 * 117.49936 * 359.96845 * 13 11 10 39 39 H 1.08006 * 125.98937 * 179.97438 * 16 3 2 40 40 H 1.09005 * 109.46717 * 210.00325 * 19 18 2 41 41 H 1.09004 * 109.47128 * 329.99800 * 19 18 2 42 42 H 0.96999 * 119.99788 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3247 1.1132 0.0000 4 6 1.8873 2.5196 -0.0063 5 8 0.7019 2.7872 -0.0117 6 8 2.8016 3.5095 -0.0049 7 6 2.2984 4.8715 -0.0108 8 6 3.4571 5.8351 -0.0090 9 6 4.0884 6.3462 -1.0929 10 6 5.0853 7.1850 -0.5437 11 6 6.0883 8.0131 -1.3048 12 6 6.2983 7.6845 -2.7843 13 6 7.3756 7.3221 -1.7590 14 7 4.9689 7.0959 0.7497 15 8 4.0702 6.3510 1.0656 16 6 3.6599 0.6494 0.0063 17 7 3.6339 -0.6546 0.0092 18 7 2.3015 -1.0819 0.0059 19 6 1.8496 -2.4755 0.0080 20 6 1.7000 -2.9572 -1.4120 21 1 1.9191 -2.2917 -2.2339 22 6 1.2833 -4.2475 -1.6620 23 7 1.0170 -5.0581 -0.6611 24 14 1.0986 -4.8449 -3.4222 25 1 2.3815 -5.4345 -3.8822 26 1 0.0298 -5.8739 -3.4861 27 1 0.7374 -3.7011 -4.2978 28 1 -0.3634 -0.0005 -1.0277 29 1 -0.3634 -0.8897 0.5142 30 1 -0.3634 0.8903 0.5134 31 1 1.6944 5.0319 -0.9039 32 1 1.6866 5.0367 0.8760 33 1 3.8778 6.1582 -2.1353 34 1 6.1567 9.0594 -1.0070 35 1 5.7107 6.8696 -3.2072 36 1 6.5053 8.5145 -3.4598 37 1 8.2909 7.9140 -1.7603 38 1 7.4973 6.2688 -1.5068 39 1 4.5462 1.2667 0.0075 40 1 2.5823 -3.0942 0.5263 41 1 0.8890 -2.5452 0.5185 42 1 0.7235 -5.9657 -0.8370 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893252603.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:58 Heat of formation + Delta-G solvation = 71.277446 kcal Electronic energy + Delta-G solvation = -26730.899844 eV Core-core repulsion = 22682.159889 eV Total energy + Delta-G solvation = -4048.739955 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -45.24547 -40.97093 -39.74952 -37.95559 -36.40407 -33.98990 -33.71039 -32.80350 -32.18819 -31.30809 -28.27518 -27.07684 -26.65909 -24.99490 -23.68762 -23.17634 -22.50625 -22.32701 -20.45691 -20.17853 -19.02310 -17.97959 -17.72055 -17.34223 -16.84225 -16.47892 -16.28806 -15.96877 -15.24894 -14.90383 -14.63048 -14.49119 -14.34538 -13.85270 -13.40848 -13.16479 -12.87650 -12.63024 -12.50071 -12.36779 -12.19125 -11.99077 -11.91379 -11.88958 -11.59709 -11.49595 -11.18152 -10.93501 -10.91536 -10.69192 -10.53529 -10.37457 -10.13479 -10.00719 -9.98128 -9.71660 -8.76025 -8.70692 -8.14689 -6.38786 -4.47058 0.94799 1.79876 1.81391 2.51135 2.65190 3.00088 3.15210 3.21906 3.24067 3.25188 3.39439 3.57203 3.69237 4.11488 4.19956 4.37974 4.50346 4.63288 4.67661 4.86582 4.88593 4.95913 5.07506 5.09688 5.18301 5.21075 5.32333 5.38509 5.41443 5.59732 5.60366 5.66379 5.67593 5.87187 5.98921 6.23648 6.32182 6.57311 6.70602 6.83537 7.07192 7.47483 7.66160 7.70757 7.93912 8.02231 8.27949 8.57955 9.20193 10.69464 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.018311 B = 0.002201 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.805780 B =12715.864799 C =13403.547185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.175 3.825 3 C -0.320 4.320 4 C 0.556 3.444 5 O -0.526 6.526 6 O -0.351 6.351 7 C 0.151 3.849 8 C -0.031 4.031 9 C -0.198 4.198 10 C 0.044 3.956 11 C -0.089 4.089 12 C -0.163 4.163 13 C -0.162 4.162 14 N -0.352 5.352 15 O 0.113 5.887 16 C 0.082 3.918 17 N -0.296 5.296 18 N -0.309 5.309 19 C 0.250 3.750 20 C -0.542 4.542 21 H 0.066 0.934 22 C 0.068 3.932 23 N -0.888 5.888 24 Si 0.909 3.091 25 H -0.276 1.276 26 H -0.282 1.282 27 H -0.271 1.271 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.096 0.904 33 H 0.175 0.825 34 H 0.123 0.877 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.185 0.815 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.797 22.900 -1.360 23.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.037 3.963 3 C -0.333 4.333 4 C 0.404 3.596 5 O -0.416 6.416 6 O -0.269 6.269 7 C 0.076 3.924 8 C -0.094 4.094 9 C -0.219 4.219 10 C -0.114 4.114 11 C -0.108 4.108 12 C -0.200 4.200 13 C -0.200 4.200 14 N -0.053 5.053 15 O 0.043 5.957 16 C -0.106 4.106 17 N -0.115 5.115 18 N -0.085 5.085 19 C 0.133 3.867 20 C -0.580 4.580 21 H 0.084 0.916 22 C -0.136 4.136 23 N -0.526 5.526 24 Si 0.736 3.264 25 H -0.202 1.202 26 H -0.208 1.208 27 H -0.196 1.196 28 H 0.106 0.894 29 H 0.096 0.904 30 H 0.112 0.888 31 H 0.124 0.876 32 H 0.114 0.886 33 H 0.193 0.807 34 H 0.141 0.859 35 H 0.119 0.881 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.117 0.883 39 H 0.201 0.799 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.734 22.088 -0.256 22.821 hybrid contribution -0.792 0.150 -1.673 1.857 sum 4.941 22.238 -1.929 22.862 Atomic orbital electron populations 1.20635 0.86454 1.04108 1.04247 1.21459 0.95004 0.86390 0.93491 1.18758 0.93830 0.88936 1.31771 1.20031 0.83198 0.84648 0.71737 1.90780 1.17742 1.84297 1.48781 1.86605 1.40221 1.14524 1.85524 1.20938 0.89249 0.76848 1.05351 1.23887 0.99166 1.00031 0.86364 1.22451 0.97444 1.00860 1.01169 1.22649 0.98850 1.00158 0.89715 1.20107 0.96246 0.98327 0.96097 1.23061 1.02437 1.03945 0.90553 1.23055 0.92551 1.01916 1.02508 1.73844 1.05069 1.10190 1.16181 1.84872 1.33700 1.44243 1.32902 1.23928 0.96617 0.92145 0.97889 1.77235 0.98240 1.12316 1.23704 1.49457 1.02614 1.08343 1.48106 1.19929 0.96568 0.70570 0.99636 1.21226 1.47697 0.98212 0.90877 0.91596 1.24925 0.94366 0.95973 0.98371 1.69912 1.44287 1.07257 1.31117 0.86306 0.78134 0.78662 0.83330 1.20205 1.20760 1.19583 0.89429 0.90380 0.88817 0.87553 0.88618 0.80724 0.85901 0.88053 0.87721 0.87826 0.88261 0.79856 0.92258 0.92366 0.92036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.60 9.56 36.00 0.34 -1.26 16 2 C 0.17 3.39 7.01 -81.59 -0.57 2.82 16 3 C -0.32 -5.73 6.13 -105.08 -0.64 -6.37 16 4 C 0.56 8.84 7.95 34.41 0.27 9.12 16 5 O -0.53 -8.80 14.64 -19.28 -0.28 -9.08 16 6 O -0.35 -4.73 10.05 -40.65 -0.41 -5.14 16 7 C 0.15 1.54 6.04 36.01 0.22 1.76 16 8 C -0.03 -0.32 7.13 -35.30 -0.25 -0.57 16 9 C -0.20 -1.85 10.40 -39.38 -0.41 -2.26 16 10 C 0.04 0.46 6.95 -82.10 -0.57 -0.11 16 11 C -0.09 -0.69 6.33 -91.77 -0.58 -1.27 16 12 C -0.16 -0.95 10.05 -26.69 -0.27 -1.22 16 13 C -0.16 -1.10 10.24 -26.69 -0.27 -1.37 16 14 N -0.35 -4.35 12.07 33.42 0.40 -3.95 16 15 O 0.11 1.36 11.20 17.18 0.19 1.55 16 16 C 0.08 1.46 11.87 -16.97 -0.20 1.25 16 17 N -0.30 -6.29 12.50 30.87 0.39 -5.91 16 18 N -0.31 -6.78 3.56 -57.76 -0.21 -6.98 16 19 C 0.25 6.02 5.97 -5.19 -0.03 5.98 16 20 C -0.54 -14.19 9.39 -34.44 -0.32 -14.51 16 21 H 0.07 1.77 7.81 -52.48 -0.41 1.36 16 22 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 23 N -0.89 -24.03 13.29 55.43 0.74 -23.29 16 24 Si 0.91 20.34 29.54 -169.99 -5.02 15.32 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 26 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 27 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 28 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 29 H 0.08 1.26 7.04 -51.93 -0.37 0.90 16 30 H 0.09 1.44 6.52 -51.93 -0.34 1.10 16 31 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.18 1.21 7.62 -52.49 -0.40 0.81 16 34 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.10 0.58 7.33 -51.93 -0.38 0.20 16 36 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.18 2.60 8.06 -52.48 -0.42 2.18 16 40 H 0.06 1.52 8.14 -51.93 -0.42 1.10 16 41 H 0.06 1.38 7.01 -51.93 -0.36 1.01 16 42 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 373.44 15.07 5.63 5.63 Total: -1.00 -30.17 373.44 -7.16 -37.32 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -5.20 Total: 0.88 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: -3.39 Total: -6.34 kcal Atomic # 7 Polarization: -41.45 SS G_CDS: 1.32 Total: -40.13 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: -0.50 Total: -12.67 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.17 -7.16 -37.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893252603.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.600 kcal (2) G-P(sol) polarization free energy of solvation -30.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds