Wall clock time and date at job start Tue Mar 31 2020 15:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38125 * 126.30096 * 2 1 4 4 C 1.47288 * 126.42228 * 359.69722 * 3 2 1 5 5 O 1.21519 * 119.99977 * 0.02562 * 4 3 2 6 6 O 1.34757 * 119.99732 * 179.97438 * 4 3 2 7 7 C 1.45195 * 116.99649 * 180.02562 * 6 4 3 8 8 C 1.50708 * 109.47044 * 180.02562 * 7 6 4 9 9 C 1.35448 * 126.77474 * 89.70409 * 8 7 6 10 10 C 1.41385 * 103.98398 * 179.91197 * 9 8 7 11 11 C 1.50701 * 126.80283 * 180.09587 * 10 9 8 12 12 C 1.53002 * 117.49811 * 344.03921 * 11 10 9 13 13 C 1.53001 * 117.49721 * 275.38240 * 11 10 9 14 14 N 1.30171 * 106.39496 * 0.36155 * 10 9 8 15 15 O 1.20925 * 111.60627 * 359.76562 * 14 10 9 16 16 C 1.41343 * 107.14628 * 179.73461 * 3 2 1 17 17 N 1.30425 * 108.01629 * 0.02562 * 16 3 2 18 18 N 1.34231 * 126.29226 * 179.68772 * 2 1 3 19 19 C 1.46504 * 125.74248 * 0.26402 * 18 2 1 20 20 C 1.50695 * 109.47256 * 90.00154 * 19 18 2 21 21 H 1.08008 * 119.99752 * 359.97438 * 20 19 18 22 22 C 1.37872 * 120.00257 * 179.97438 * 20 19 18 23 23 N 1.31521 * 119.99759 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00293 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47538 * 89.99661 * 24 22 20 26 26 H 1.48499 * 109.47278 * 210.00083 * 24 22 20 27 27 H 1.48507 * 109.47166 * 329.99709 * 24 22 20 28 28 H 1.09007 * 109.47149 * 90.02631 * 1 2 3 29 29 H 1.09001 * 109.47680 * 210.02517 * 1 2 3 30 30 H 1.09005 * 109.47158 * 330.02739 * 1 2 3 31 31 H 1.09002 * 109.47316 * 299.99970 * 7 6 4 32 32 H 1.08998 * 109.47780 * 60.00004 * 7 6 4 33 33 H 1.07999 * 128.00842 * 0.02562 * 9 8 7 34 34 H 1.08994 * 115.54747 * 129.71095 * 11 10 9 35 35 H 1.09003 * 117.49753 * 0.02562 * 12 11 10 36 36 H 1.08999 * 117.49713 * 145.01911 * 12 11 10 37 37 H 1.09000 * 117.49242 * 214.98135 * 13 11 10 38 38 H 1.08994 * 117.49936 * 359.96845 * 13 11 10 39 39 H 1.08006 * 125.98937 * 179.97438 * 16 3 2 40 40 H 1.09005 * 109.46717 * 210.00325 * 19 18 2 41 41 H 1.09004 * 109.47128 * 329.99800 * 19 18 2 42 42 H 0.96999 * 119.99788 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3247 1.1132 0.0000 4 6 1.8873 2.5196 -0.0063 5 8 0.7019 2.7872 -0.0117 6 8 2.8016 3.5095 -0.0049 7 6 2.2984 4.8715 -0.0108 8 6 3.4571 5.8351 -0.0090 9 6 4.0884 6.3462 -1.0929 10 6 5.0853 7.1850 -0.5437 11 6 6.0883 8.0131 -1.3048 12 6 6.2983 7.6845 -2.7843 13 6 7.3756 7.3221 -1.7590 14 7 4.9689 7.0959 0.7497 15 8 4.0702 6.3510 1.0656 16 6 3.6599 0.6494 0.0063 17 7 3.6339 -0.6546 0.0092 18 7 2.3015 -1.0819 0.0059 19 6 1.8496 -2.4755 0.0080 20 6 1.7000 -2.9572 -1.4120 21 1 1.9191 -2.2917 -2.2339 22 6 1.2833 -4.2475 -1.6620 23 7 1.0170 -5.0581 -0.6611 24 14 1.0986 -4.8449 -3.4222 25 1 2.3815 -5.4345 -3.8822 26 1 0.0298 -5.8739 -3.4861 27 1 0.7374 -3.7011 -4.2978 28 1 -0.3634 -0.0005 -1.0277 29 1 -0.3634 -0.8897 0.5142 30 1 -0.3634 0.8903 0.5134 31 1 1.6944 5.0319 -0.9039 32 1 1.6866 5.0367 0.8760 33 1 3.8778 6.1582 -2.1353 34 1 6.1567 9.0594 -1.0070 35 1 5.7107 6.8696 -3.2072 36 1 6.5053 8.5145 -3.4598 37 1 8.2909 7.9140 -1.7603 38 1 7.4973 6.2688 -1.5068 39 1 4.5462 1.2667 0.0075 40 1 2.5823 -3.0942 0.5263 41 1 0.8890 -2.5452 0.5185 42 1 0.7235 -5.9657 -0.8370 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893252603.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:56 Heat of formation + Delta-G solvation = 55.882573 kcal Electronic energy + Delta-G solvation = -26731.567416 eV Core-core repulsion = 22682.159889 eV Total energy + Delta-G solvation = -4049.407527 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -46.05531 -42.43512 -40.97865 -38.50958 -37.56606 -35.83175 -34.48584 -33.93568 -33.59267 -32.83545 -29.67814 -28.57622 -27.87431 -25.68324 -25.45465 -24.00981 -23.64808 -22.96495 -21.85523 -20.91823 -20.48241 -19.03624 -18.82386 -18.61179 -18.43614 -17.51388 -17.35132 -16.95605 -16.60646 -16.26882 -16.00304 -15.52787 -15.23920 -15.00147 -14.75910 -14.40712 -14.25407 -13.99466 -13.71243 -13.59212 -13.55424 -13.13315 -13.02630 -12.99841 -12.72330 -12.70045 -12.41405 -12.31068 -12.16183 -11.86224 -11.85728 -11.74854 -11.37719 -11.35501 -10.78147 -10.75574 -10.59171 -10.33249 -9.66733 -8.37649 -6.53718 0.10984 0.42301 1.03455 1.18328 1.38852 1.39956 1.46633 1.53141 1.77657 2.20760 2.23407 2.33584 2.68733 2.95318 3.05513 3.38701 3.66893 3.75593 3.82365 3.90336 3.94675 3.97748 4.06748 4.15295 4.20823 4.25641 4.43069 4.53574 4.59927 4.63185 4.75677 4.78518 4.88216 4.90459 4.97812 5.02193 5.09561 5.13674 5.21861 5.31695 5.49387 5.59256 5.74201 5.97044 6.54412 6.71173 6.84690 7.14452 7.17452 8.70417 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.018311 B = 0.002201 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.805780 B =12715.864799 C =13403.547185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.164 3.836 3 C -0.321 4.321 4 C 0.567 3.433 5 O -0.533 6.533 6 O -0.351 6.351 7 C 0.150 3.850 8 C -0.039 4.039 9 C -0.191 4.191 10 C 0.042 3.958 11 C -0.108 4.108 12 C -0.145 4.145 13 C -0.167 4.167 14 N -0.381 5.381 15 O 0.094 5.906 16 C 0.096 3.904 17 N -0.337 5.337 18 N -0.333 5.333 19 C 0.265 3.735 20 C -0.555 4.555 21 H 0.054 0.946 22 C 0.024 3.976 23 N -0.916 5.916 24 Si 0.971 3.029 25 H -0.275 1.275 26 H -0.272 1.272 27 H -0.267 1.267 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.107 0.893 31 H 0.129 0.871 32 H 0.105 0.895 33 H 0.201 0.799 34 H 0.129 0.871 35 H 0.105 0.895 36 H 0.125 0.875 37 H 0.118 0.882 38 H 0.086 0.914 39 H 0.219 0.781 40 H 0.033 0.967 41 H 0.057 0.943 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.777 24.630 -3.156 25.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.027 3.973 3 C -0.334 4.334 4 C 0.414 3.586 5 O -0.424 6.424 6 O -0.268 6.268 7 C 0.076 3.924 8 C -0.102 4.102 9 C -0.211 4.211 10 C -0.116 4.116 11 C -0.126 4.126 12 C -0.183 4.183 13 C -0.205 4.205 14 N -0.085 5.085 15 O 0.027 5.973 16 C -0.091 4.091 17 N -0.156 5.156 18 N -0.109 5.109 19 C 0.147 3.853 20 C -0.593 4.593 21 H 0.072 0.928 22 C -0.177 4.177 23 N -0.554 5.554 24 Si 0.795 3.205 25 H -0.200 1.200 26 H -0.197 1.197 27 H -0.192 1.192 28 H 0.110 0.890 29 H 0.095 0.905 30 H 0.126 0.874 31 H 0.146 0.854 32 H 0.123 0.877 33 H 0.218 0.782 34 H 0.147 0.853 35 H 0.123 0.877 36 H 0.143 0.857 37 H 0.136 0.864 38 H 0.104 0.896 39 H 0.236 0.764 40 H 0.051 0.949 41 H 0.075 0.925 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.705 23.839 -2.038 24.597 hybrid contribution -0.713 -0.214 -1.086 1.316 sum 4.992 23.625 -3.124 24.348 Atomic orbital electron populations 1.20683 0.84882 1.04710 1.04639 1.21987 0.96173 0.86195 0.92959 1.18994 0.93645 0.89974 1.30830 1.19577 0.83148 0.84353 0.71521 1.90777 1.18110 1.84475 1.49048 1.86554 1.39703 1.15642 1.84942 1.21228 0.89377 0.74822 1.06986 1.24011 0.99465 1.00325 0.86421 1.22817 0.96421 0.99787 1.02121 1.23158 0.99163 0.99946 0.89344 1.20273 0.96472 0.98391 0.97507 1.23189 1.01036 1.04432 0.89596 1.23117 0.93045 1.01313 1.02983 1.73843 1.05855 1.11295 1.17554 1.84836 1.34080 1.44730 1.33700 1.24499 0.97859 0.91268 0.95452 1.77183 0.98330 1.14187 1.25861 1.49195 1.03349 1.07969 1.50418 1.19470 0.95599 0.71892 0.98361 1.21379 1.47964 0.98507 0.91486 0.92796 1.25716 0.93838 0.95974 1.02199 1.69994 1.44752 1.07658 1.32981 0.85351 0.78227 0.78273 0.78653 1.20041 1.19708 1.19189 0.89014 0.90477 0.87419 0.85356 0.87678 0.78184 0.85273 0.87706 0.85702 0.86374 0.89563 0.76431 0.94916 0.92514 0.91656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.98 9.56 71.23 0.68 -2.30 16 2 C 0.16 6.30 7.01 42.16 0.30 6.60 16 3 C -0.32 -11.13 6.13 -20.16 -0.12 -11.25 16 4 C 0.57 16.86 7.95 70.20 0.56 17.41 16 5 O -0.53 -16.65 14.64 19.77 0.29 -16.36 16 6 O -0.35 -8.65 10.05 -56.68 -0.57 -9.22 16 7 C 0.15 2.70 6.04 71.24 0.43 3.13 16 8 C -0.04 -0.74 7.13 25.04 0.18 -0.57 16 9 C -0.19 -3.15 10.40 22.40 0.23 -2.92 16 10 C 0.04 0.81 6.95 43.58 0.30 1.11 16 11 C -0.11 -1.49 6.33 -11.54 -0.07 -1.56 16 12 C -0.15 -1.30 10.05 30.62 0.31 -0.99 16 13 C -0.17 -1.96 10.24 30.62 0.31 -1.65 16 14 N -0.38 -9.27 12.07 -49.55 -0.60 -9.87 16 15 O 0.09 2.21 11.20 71.63 0.80 3.01 16 16 C 0.10 3.33 11.87 85.67 1.02 4.34 16 17 N -0.34 -14.42 12.50 -56.25 -0.70 -15.12 16 18 N -0.33 -14.85 3.56 -336.65 -1.20 -16.05 16 19 C 0.27 13.19 5.97 85.63 0.51 13.70 16 20 C -0.56 -29.58 9.39 25.60 0.24 -29.34 16 21 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 22 C 0.02 1.28 5.46 84.65 0.46 1.74 16 23 N -0.92 -50.02 13.29 21.45 0.28 -49.74 16 24 Si 0.97 41.49 29.54 68.60 2.03 43.51 16 25 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 26 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 27 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 28 H 0.09 2.91 8.14 -2.38 -0.02 2.89 16 29 H 0.08 2.50 7.04 -2.39 -0.02 2.49 16 30 H 0.11 3.18 6.52 -2.38 -0.02 3.16 16 31 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.20 2.11 7.62 -2.91 -0.02 2.08 16 34 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.10 0.87 7.33 -2.39 -0.02 0.85 16 36 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.22 5.68 8.06 -2.91 -0.02 5.66 16 40 H 0.03 1.77 8.14 -2.38 -0.02 1.75 16 41 H 0.06 2.78 7.01 -2.39 -0.02 2.77 16 42 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 Total: -1.00 -65.23 373.44 6.73 -58.51 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: 1.06 Total: 13.88 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: 5.33 Total: -2.55 kcal Atomic # 7 Polarization: -88.57 SS G_CDS: -2.21 Total: -90.78 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: 0.52 Total: -22.57 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.51 kcal Total: -65.23 6.73 -58.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893252603.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.389 kcal (2) G-P(sol) polarization free energy of solvation -65.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds