Wall clock time and date at job start Tue Mar 31 2020 15:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35676 * 116.99958 * 2 1 4 4 C 1.38923 * 119.68121 * 179.97438 * 3 2 1 5 5 C 1.38375 * 119.11041 * 179.74645 * 4 3 2 6 6 C 1.50700 * 120.75872 * 180.23487 * 5 4 3 7 7 O 1.45196 * 109.47424 * 90.00437 * 6 5 4 8 8 C 1.34748 * 117.00374 * 180.02562 * 7 6 5 9 9 O 1.21527 * 119.99947 * 359.97438 * 8 7 6 10 10 C 1.47292 * 120.00108 * 179.97438 * 8 7 6 11 11 C 1.41334 * 126.42728 * 359.69180 * 10 8 7 12 12 N 1.30431 * 108.01858 * 179.81572 * 11 10 8 13 13 N 1.39939 * 108.91170 * 0.44335 * 12 11 10 14 14 C 1.46498 * 125.74258 * 179.74986 * 13 12 11 15 15 C 1.50703 * 109.47030 * 269.95997 * 14 13 12 16 16 H 1.07996 * 120.00215 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00125 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99759 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 120.00180 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47033 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47026 * 119.99998 * 19 17 15 22 22 H 1.48497 * 109.47548 * 240.00257 * 19 17 15 23 23 C 1.34218 * 108.51373 * 359.71223 * 13 12 11 24 24 C 1.50703 * 126.29730 * 179.97438 * 23 13 12 25 25 C 1.38830 * 118.48762 * 0.25931 * 5 4 3 26 26 C 1.38049 * 119.28862 * 359.97438 * 25 5 4 27 27 N 1.31972 * 120.83284 * 0.02714 * 26 25 5 28 28 H 1.09001 * 109.47025 * 300.00278 * 1 2 3 29 29 H 1.09004 * 109.47033 * 59.99481 * 1 2 3 30 30 H 1.08994 * 109.47313 * 180.02562 * 1 2 3 31 31 H 1.08002 * 120.44820 * 0.03209 * 4 3 2 32 32 H 1.09010 * 109.47311 * 210.00374 * 6 5 4 33 33 H 1.08995 * 109.47313 * 330.00007 * 6 5 4 34 34 H 1.08007 * 125.99707 * 359.97438 * 11 10 8 35 35 H 1.09002 * 109.47247 * 29.95453 * 14 13 12 36 36 H 1.08995 * 109.47064 * 149.96191 * 14 13 12 37 37 H 0.97003 * 120.00134 * 179.97438 * 18 17 15 38 38 H 1.09005 * 109.46616 * 270.00372 * 24 23 13 39 39 H 1.08998 * 109.47043 * 29.99958 * 24 23 13 40 40 H 1.08991 * 109.47324 * 150.00334 * 24 23 13 41 41 H 1.08002 * 120.35803 * 180.02562 * 25 5 4 42 42 H 1.07993 * 119.58638 * 179.97438 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4327 1.2739 0.0005 5 6 4.0486 2.5130 -0.0048 6 6 5.5512 2.6268 -0.0097 7 8 6.0297 2.6596 -1.3802 8 6 7.3613 2.7594 -1.5611 9 8 8.1024 2.8179 -0.5998 10 6 7.9185 2.7976 -2.9240 11 6 7.1873 2.7330 -4.1318 12 7 8.0350 2.8003 -5.1208 13 7 9.3307 2.8994 -4.6015 14 6 10.5632 2.9909 -5.3882 15 6 11.0934 1.6055 -5.6540 16 1 10.5654 0.7431 -5.2746 17 6 12.2527 1.4388 -6.3817 18 7 12.8959 2.4889 -6.8433 19 14 12.9103 -0.2783 -6.7106 20 1 12.0095 -1.2811 -6.0874 21 1 12.9724 -0.5124 -8.1757 22 1 14.2712 -0.4068 -6.1306 23 6 9.2542 2.8974 -3.2616 24 6 10.4126 2.9867 -2.3017 25 6 3.2506 3.6491 -0.0050 26 6 1.8772 3.5097 -0.0005 27 7 1.3186 2.3140 0.0046 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 4.0229 0.3694 0.0004 32 1 5.8480 3.5431 0.5007 33 1 5.9823 1.7682 0.5051 34 1 6.1144 2.6460 -4.2204 35 1 10.3536 3.4876 -6.3356 36 1 11.3063 3.5641 -4.8339 37 1 13.7117 2.3717 -7.3549 38 1 10.7686 1.9834 -2.0675 39 1 11.2189 3.5611 -2.7578 40 1 10.0881 3.4801 -1.3856 41 1 3.6995 4.6314 -0.0096 42 1 1.2519 4.3902 -0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893682283.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:53 Heat of formation + Delta-G solvation = -17.450451 kcal Electronic energy + Delta-G solvation = -26688.100626 eV Core-core repulsion = 22635.513140 eV Total energy + Delta-G solvation = -4052.587485 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.04560 -40.86108 -39.65939 -38.24314 -36.25804 -33.97568 -33.51257 -32.17658 -31.29519 -31.06841 -28.42761 -27.60853 -26.92861 -26.56020 -23.81456 -23.63254 -22.58810 -21.87251 -20.36647 -19.00942 -18.28780 -17.51827 -17.44130 -16.83023 -16.46963 -16.29468 -16.09985 -15.98883 -15.23479 -14.78386 -14.62566 -14.46842 -14.31410 -13.80058 -13.63166 -13.24411 -13.02841 -12.84757 -12.60232 -12.45587 -12.27720 -12.17690 -11.99773 -11.86879 -11.58159 -11.52290 -11.14762 -10.94178 -10.65196 -10.50369 -10.36770 -10.18541 -10.00373 -9.96130 -9.80535 -8.83275 -8.75343 -8.68115 -8.11303 -6.37804 -4.45782 0.70974 0.87409 1.86202 2.66487 2.69076 2.85736 3.14823 3.23029 3.26097 3.35208 3.57259 3.61888 3.97091 4.21251 4.28967 4.58273 4.76362 4.77251 4.95143 4.96862 4.99871 5.07272 5.10565 5.11975 5.26232 5.31065 5.40548 5.44415 5.53586 5.63630 5.91361 5.94709 6.00860 6.05169 6.29775 6.34314 6.64204 6.73322 6.84884 6.90326 7.09747 7.49655 7.49763 7.68211 7.72089 8.09881 8.30914 8.59791 9.21485 10.70486 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.019629 B = 0.002167 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.126033 B =12915.751122 C =13471.791223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.308 6.308 3 C 0.318 3.682 4 C -0.165 4.165 5 C -0.012 4.012 6 C 0.109 3.891 7 O -0.349 6.349 8 C 0.553 3.447 9 O -0.528 6.528 10 C -0.319 4.319 11 C 0.082 3.918 12 N -0.297 5.297 13 N -0.310 5.310 14 C 0.250 3.750 15 C -0.541 4.541 16 H 0.066 0.934 17 C 0.067 3.933 18 N -0.889 5.889 19 Si 0.909 3.091 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.279 1.279 23 C 0.173 3.827 24 C -0.096 4.096 25 C -0.186 4.186 26 C 0.137 3.863 27 N -0.537 5.537 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.096 0.904 31 H 0.145 0.855 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.185 0.815 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.269 0.731 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.093 0.907 41 H 0.142 0.858 42 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.397 1.374 15.198 24.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.214 6.214 3 C 0.139 3.861 4 C -0.186 4.186 5 C -0.020 4.020 6 C 0.035 3.965 7 O -0.266 6.266 8 C 0.400 3.600 9 O -0.419 6.419 10 C -0.333 4.333 11 C -0.106 4.106 12 N -0.116 5.116 13 N -0.086 5.086 14 C 0.133 3.867 15 C -0.579 4.579 16 H 0.085 0.915 17 C -0.137 4.137 18 N -0.526 5.526 19 Si 0.735 3.265 20 H -0.195 1.195 21 H -0.205 1.205 22 H -0.205 1.205 23 C 0.035 3.965 24 C -0.154 4.154 25 C -0.207 4.207 26 C -0.018 4.018 27 N -0.261 5.261 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.114 0.886 31 H 0.163 0.837 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.201 0.799 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.105 0.895 39 H 0.096 0.904 40 H 0.111 0.889 41 H 0.159 0.841 42 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -19.562 1.119 13.970 24.064 hybrid contribution 0.882 -0.731 0.611 1.299 sum -18.680 0.387 14.581 23.700 Atomic orbital electron populations 1.22866 0.77108 1.03021 1.02455 1.86254 1.23001 1.24404 1.87780 1.19765 0.89178 0.84773 0.92358 1.21002 0.92122 0.99190 1.06267 1.19732 0.94613 0.92499 0.95169 1.21650 0.88652 1.04010 0.82170 1.86604 1.25371 1.84965 1.29689 1.20063 0.79296 0.71803 0.88791 1.90770 1.59650 1.48860 1.42586 1.18789 0.92314 1.31332 0.90816 1.23923 0.99729 0.97918 0.89025 1.77233 0.87885 1.23569 1.22883 1.49439 1.07452 1.47998 1.03677 1.19924 0.75596 0.99514 0.91692 1.21274 1.09227 0.91341 1.36061 0.91539 1.24928 0.96012 0.98057 0.94678 1.69919 1.17844 1.29373 1.35477 0.86255 0.78766 0.83134 0.78301 1.19493 1.20527 1.20527 1.21456 0.95095 0.93687 0.86251 1.20627 0.93704 1.04122 0.96950 1.21963 0.94719 0.99546 1.04439 1.22398 0.92637 0.93658 0.93109 1.67312 1.41081 0.98911 1.18794 0.92323 0.92210 0.88573 0.83706 0.89615 0.89748 0.79860 0.92270 0.92403 0.92107 0.89466 0.90427 0.88853 0.84053 0.82001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.38 101.05 1.05 1.35 16 2 O -0.31 -3.23 10.48 -18.73 -0.20 -3.43 16 3 C 0.32 3.50 7.49 -17.12 -0.13 3.38 16 4 C -0.17 -1.73 9.75 -39.28 -0.38 -2.12 16 5 C -0.01 -0.12 5.55 -104.35 -0.58 -0.70 16 6 C 0.11 1.18 5.65 36.01 0.20 1.39 16 7 O -0.35 -4.90 10.05 -40.62 -0.41 -5.31 16 8 C 0.55 9.15 7.95 34.41 0.27 9.42 16 9 O -0.53 -9.26 14.63 -19.29 -0.28 -9.55 16 10 C -0.32 -5.87 6.13 -105.08 -0.64 -6.51 16 11 C 0.08 1.48 11.87 -16.97 -0.20 1.28 16 12 N -0.30 -6.39 12.50 30.87 0.39 -6.01 16 13 N -0.31 -6.88 3.56 -57.76 -0.21 -7.09 16 14 C 0.25 6.07 5.97 -5.19 -0.03 6.04 16 15 C -0.54 -14.32 9.39 -34.44 -0.32 -14.64 16 16 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 17 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 18 N -0.89 -24.20 13.29 55.43 0.74 -23.46 16 19 Si 0.91 20.56 29.54 -169.99 -5.02 15.54 16 20 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 23 C 0.17 3.43 7.01 -81.59 -0.57 2.86 16 24 C -0.10 -1.63 9.57 36.01 0.34 -1.29 16 25 C -0.19 -1.59 9.81 -39.43 -0.39 -1.98 16 26 C 0.14 1.15 11.18 -17.56 -0.20 0.96 16 27 N -0.54 -5.60 9.22 -13.33 -0.12 -5.72 16 28 H 0.06 0.41 8.10 -51.93 -0.42 -0.01 16 29 H 0.06 0.44 8.11 -51.93 -0.42 0.02 16 30 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.15 1.38 8.06 -52.49 -0.42 0.96 16 32 H 0.09 0.83 8.10 -51.92 -0.42 0.41 16 33 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 34 H 0.18 2.66 8.06 -52.48 -0.42 2.23 16 35 H 0.06 1.53 8.14 -51.93 -0.42 1.11 16 36 H 0.06 1.38 7.01 -51.93 -0.36 1.02 16 37 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 38 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 39 H 0.08 1.28 7.05 -51.93 -0.37 0.91 16 40 H 0.09 1.48 6.50 -51.93 -0.34 1.14 16 41 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 42 H 0.16 0.85 8.06 -52.49 -0.42 0.43 16 LS Contribution 373.46 15.07 5.63 5.63 Total: -1.00 -31.08 373.46 -6.41 -37.49 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -5.26 Total: 0.79 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -1.67 Total: 1.11 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 0.79 Total: -42.28 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -0.89 Total: -18.28 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.08 -6.41 -37.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893682283.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.044 kcal (2) G-P(sol) polarization free energy of solvation -31.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds