Wall clock time and date at job start Tue Mar 31 2020 15:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35676 * 116.99958 * 2 1 4 4 C 1.38923 * 119.68121 * 179.97438 * 3 2 1 5 5 C 1.38375 * 119.11041 * 179.74645 * 4 3 2 6 6 C 1.50700 * 120.75872 * 180.23487 * 5 4 3 7 7 O 1.45196 * 109.47424 * 90.00437 * 6 5 4 8 8 C 1.34748 * 117.00374 * 180.02562 * 7 6 5 9 9 O 1.21527 * 119.99947 * 359.97438 * 8 7 6 10 10 C 1.47292 * 120.00108 * 179.97438 * 8 7 6 11 11 C 1.41334 * 126.42728 * 359.69180 * 10 8 7 12 12 N 1.30431 * 108.01858 * 179.81572 * 11 10 8 13 13 N 1.39939 * 108.91170 * 0.44335 * 12 11 10 14 14 C 1.46498 * 125.74258 * 179.74986 * 13 12 11 15 15 C 1.50703 * 109.47030 * 269.95997 * 14 13 12 16 16 H 1.07996 * 120.00215 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00125 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99759 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 120.00180 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47033 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47026 * 119.99998 * 19 17 15 22 22 H 1.48497 * 109.47548 * 240.00257 * 19 17 15 23 23 C 1.34218 * 108.51373 * 359.71223 * 13 12 11 24 24 C 1.50703 * 126.29730 * 179.97438 * 23 13 12 25 25 C 1.38830 * 118.48762 * 0.25931 * 5 4 3 26 26 C 1.38049 * 119.28862 * 359.97438 * 25 5 4 27 27 N 1.31972 * 120.83284 * 0.02714 * 26 25 5 28 28 H 1.09001 * 109.47025 * 300.00278 * 1 2 3 29 29 H 1.09004 * 109.47033 * 59.99481 * 1 2 3 30 30 H 1.08994 * 109.47313 * 180.02562 * 1 2 3 31 31 H 1.08002 * 120.44820 * 0.03209 * 4 3 2 32 32 H 1.09010 * 109.47311 * 210.00374 * 6 5 4 33 33 H 1.08995 * 109.47313 * 330.00007 * 6 5 4 34 34 H 1.08007 * 125.99707 * 359.97438 * 11 10 8 35 35 H 1.09002 * 109.47247 * 29.95453 * 14 13 12 36 36 H 1.08995 * 109.47064 * 149.96191 * 14 13 12 37 37 H 0.97003 * 120.00134 * 179.97438 * 18 17 15 38 38 H 1.09005 * 109.46616 * 270.00372 * 24 23 13 39 39 H 1.08998 * 109.47043 * 29.99958 * 24 23 13 40 40 H 1.08991 * 109.47324 * 150.00334 * 24 23 13 41 41 H 1.08002 * 120.35803 * 180.02562 * 25 5 4 42 42 H 1.07993 * 119.58638 * 179.97438 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4327 1.2739 0.0005 5 6 4.0486 2.5130 -0.0048 6 6 5.5512 2.6268 -0.0097 7 8 6.0297 2.6596 -1.3802 8 6 7.3613 2.7594 -1.5611 9 8 8.1024 2.8179 -0.5998 10 6 7.9185 2.7976 -2.9240 11 6 7.1873 2.7330 -4.1318 12 7 8.0350 2.8003 -5.1208 13 7 9.3307 2.8994 -4.6015 14 6 10.5632 2.9909 -5.3882 15 6 11.0934 1.6055 -5.6540 16 1 10.5654 0.7431 -5.2746 17 6 12.2527 1.4388 -6.3817 18 7 12.8959 2.4889 -6.8433 19 14 12.9103 -0.2783 -6.7106 20 1 12.0095 -1.2811 -6.0874 21 1 12.9724 -0.5124 -8.1757 22 1 14.2712 -0.4068 -6.1306 23 6 9.2542 2.8974 -3.2616 24 6 10.4126 2.9867 -2.3017 25 6 3.2506 3.6491 -0.0050 26 6 1.8772 3.5097 -0.0005 27 7 1.3186 2.3140 0.0046 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 4.0229 0.3694 0.0004 32 1 5.8480 3.5431 0.5007 33 1 5.9823 1.7682 0.5051 34 1 6.1144 2.6460 -4.2204 35 1 10.3536 3.4876 -6.3356 36 1 11.3063 3.5641 -4.8339 37 1 13.7117 2.3717 -7.3549 38 1 10.7686 1.9834 -2.0675 39 1 11.2189 3.5611 -2.7578 40 1 10.0881 3.4801 -1.3856 41 1 3.6995 4.6314 -0.0096 42 1 1.2519 4.3902 -0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893682283.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:52 Heat of formation + Delta-G solvation = -36.588089 kcal Electronic energy + Delta-G solvation = -26688.930496 eV Core-core repulsion = 22635.513140 eV Total energy + Delta-G solvation = -4053.417356 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -42.43524 -41.71238 -40.87850 -38.98106 -37.43338 -35.83849 -34.36777 -33.86745 -32.85415 -31.75688 -29.71877 -28.74719 -28.27767 -27.55173 -25.47125 -24.48408 -23.91179 -22.74078 -21.78916 -20.51286 -19.08801 -18.93122 -18.69264 -18.27317 -17.56151 -17.19520 -16.97886 -16.91815 -16.77476 -16.29376 -15.99315 -15.46704 -15.23677 -15.05677 -14.60887 -14.42222 -14.33071 -14.14686 -13.92749 -13.71972 -13.59752 -13.43046 -13.14104 -13.05885 -12.98853 -12.71394 -12.63134 -12.34050 -12.17197 -11.85855 -11.84125 -11.68944 -11.37699 -10.86458 -10.76481 -10.72401 -10.33303 -9.66494 -9.53040 -8.38752 -6.54559 -0.05503 0.16820 0.42868 1.18270 1.36644 1.38955 1.45902 1.53709 1.91426 2.13501 2.23402 2.32577 2.78407 2.94150 3.29521 3.51752 3.66601 3.78776 3.84561 3.97105 4.06703 4.09187 4.18547 4.36889 4.44195 4.44462 4.45731 4.54365 4.62503 4.72142 4.75856 4.77984 4.85363 4.88275 4.98352 5.12536 5.24718 5.36397 5.40672 5.48804 5.59820 5.73480 5.96823 6.21355 6.53821 6.71900 6.79472 6.87592 7.16607 8.69498 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.019629 B = 0.002167 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.126033 B =12915.751122 C =13471.791223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.324 6.324 3 C 0.301 3.699 4 C -0.178 4.178 5 C -0.020 4.020 6 C 0.108 3.892 7 O -0.347 6.347 8 C 0.562 3.438 9 O -0.538 6.538 10 C -0.321 4.321 11 C 0.097 3.903 12 N -0.336 5.336 13 N -0.333 5.333 14 C 0.265 3.735 15 C -0.555 4.555 16 H 0.052 0.948 17 C 0.025 3.975 18 N -0.915 5.915 19 Si 0.971 3.029 20 H -0.273 1.273 21 H -0.275 1.275 22 H -0.268 1.268 23 C 0.162 3.838 24 C -0.091 4.091 25 C -0.182 4.182 26 C 0.136 3.864 27 N -0.549 5.549 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.119 0.881 31 H 0.146 0.854 32 H 0.101 0.899 33 H 0.088 0.912 34 H 0.220 0.780 35 H 0.034 0.966 36 H 0.057 0.943 37 H 0.275 0.725 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.107 0.893 41 H 0.165 0.835 42 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.498 1.302 16.376 26.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.231 6.231 3 C 0.122 3.878 4 C -0.199 4.199 5 C -0.028 4.028 6 C 0.034 3.966 7 O -0.264 6.264 8 C 0.409 3.591 9 O -0.430 6.430 10 C -0.335 4.335 11 C -0.090 4.090 12 N -0.155 5.155 13 N -0.109 5.109 14 C 0.147 3.853 15 C -0.593 4.593 16 H 0.070 0.930 17 C -0.177 4.177 18 N -0.553 5.553 19 Si 0.795 3.205 20 H -0.198 1.198 21 H -0.200 1.200 22 H -0.193 1.193 23 C 0.025 3.975 24 C -0.149 4.149 25 C -0.202 4.202 26 C -0.019 4.019 27 N -0.273 5.273 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.138 0.862 31 H 0.164 0.836 32 H 0.119 0.881 33 H 0.106 0.894 34 H 0.236 0.764 35 H 0.052 0.948 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.108 0.892 39 H 0.096 0.904 40 H 0.125 0.875 41 H 0.183 0.817 42 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -20.688 1.048 15.169 25.675 hybrid contribution 1.047 -0.660 0.342 1.284 sum -19.641 0.388 15.510 25.030 Atomic orbital electron populations 1.23052 0.75708 1.04590 1.02348 1.86227 1.24506 1.24558 1.87855 1.19947 0.89521 0.85168 0.93133 1.21116 0.92254 0.99667 1.06829 1.19732 0.94147 0.92924 0.96013 1.21888 0.89165 1.05061 0.80456 1.86567 1.23604 1.84322 1.31912 1.19674 0.80102 0.71554 0.87742 1.90764 1.60260 1.49273 1.42669 1.19024 0.91897 1.30463 0.92067 1.24500 1.00888 0.95465 0.88171 1.77183 0.88079 1.25662 1.24593 1.49185 1.07110 1.50227 1.04391 1.19470 0.76631 0.98275 0.90948 1.21404 1.09605 0.91805 1.36501 0.92976 1.25705 0.96096 1.01657 0.94238 1.69993 1.18287 1.31173 1.35859 0.85304 0.78380 0.78577 0.78226 1.19764 1.20011 1.19280 1.21978 0.96670 0.93183 0.85652 1.20670 0.92970 1.04399 0.96830 1.22261 0.94758 1.00076 1.03066 1.22990 0.93185 0.93963 0.91800 1.67365 1.41492 0.99437 1.19034 0.92169 0.92500 0.86250 0.83586 0.88074 0.89355 0.76355 0.94795 0.92500 0.91630 0.89220 0.90383 0.87491 0.81727 0.78811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 10.38 113.37 1.18 1.69 16 2 O -0.32 -6.65 10.48 -89.94 -0.94 -7.59 16 3 C 0.30 6.38 7.49 84.80 0.63 7.01 16 4 C -0.18 -3.57 9.75 22.47 0.22 -3.35 16 5 C -0.02 -0.37 5.55 -19.69 -0.11 -0.48 16 6 C 0.11 2.09 5.65 71.24 0.40 2.49 16 7 O -0.35 -8.96 10.05 -56.59 -0.57 -9.53 16 8 C 0.56 17.54 7.95 70.20 0.56 18.10 16 9 O -0.54 -17.85 14.63 19.75 0.29 -17.56 16 10 C -0.32 -11.44 6.13 -20.16 -0.12 -11.57 16 11 C 0.10 3.40 11.87 85.66 1.02 4.42 16 12 N -0.34 -14.56 12.50 -56.25 -0.70 -15.26 16 13 N -0.33 -15.03 3.56 -336.66 -1.20 -16.23 16 14 C 0.27 13.30 5.97 85.63 0.51 13.81 16 15 C -0.56 -29.94 9.39 25.60 0.24 -29.70 16 16 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 17 C 0.02 1.31 5.46 84.66 0.46 1.77 16 18 N -0.92 -50.21 13.29 21.45 0.28 -49.92 16 19 Si 0.97 42.06 29.54 68.60 2.03 44.09 16 20 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 21 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 22 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 23 C 0.16 6.38 7.01 42.17 0.30 6.67 16 24 C -0.09 -3.05 9.57 71.24 0.68 -2.37 16 25 C -0.18 -2.60 9.81 22.37 0.22 -2.38 16 26 C 0.14 1.93 11.18 84.63 0.95 2.88 16 27 N -0.55 -10.62 9.22 -308.95 -2.85 -13.47 16 28 H 0.06 0.78 8.10 -2.39 -0.02 0.76 16 29 H 0.06 0.79 8.11 -2.38 -0.02 0.77 16 30 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 32 H 0.10 1.68 8.10 -2.38 -0.02 1.66 16 33 H 0.09 1.66 8.10 -2.39 -0.02 1.64 16 34 H 0.22 5.80 8.06 -2.91 -0.02 5.78 16 35 H 0.03 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.06 2.81 7.01 -2.39 -0.02 2.79 16 37 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 38 H 0.09 2.96 8.14 -2.38 -0.02 2.94 16 39 H 0.08 2.58 7.05 -2.39 -0.02 2.56 16 40 H 0.11 3.27 6.50 -2.39 -0.02 3.25 16 41 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 42 H 0.20 1.36 8.06 -2.91 -0.02 1.33 16 Total: -1.00 -66.72 373.46 4.52 -62.20 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 1.05 Total: 14.29 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: 7.13 Total: 8.99 kcal Atomic # 7 Polarization: -90.42 SS G_CDS: -4.46 Total: -94.89 kcal Atomic # 8 Polarization: -33.46 SS G_CDS: -1.22 Total: -34.68 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -66.72 4.52 -62.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893682283.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.610 kcal (2) G-P(sol) polarization free energy of solvation -66.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds