Wall clock time and date at job start Tue Mar 31 2020 16:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 119.99822 * 2 1 4 4 N 1.46503 * 109.47216 * 125.00062 * 3 2 1 5 5 C 1.46492 * 119.99999 * 270.00234 * 4 3 2 6 6 C 1.50706 * 109.47031 * 269.99727 * 5 4 3 7 7 H 1.07993 * 120.00136 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99870 * 179.97438 * 6 5 4 9 9 N 1.31521 * 120.00099 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00028 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47366 * 90.00141 * 10 8 6 12 12 H 1.48503 * 109.47581 * 210.00488 * 10 8 6 13 13 H 1.48510 * 109.46950 * 330.00297 * 10 8 6 14 14 C 1.34774 * 119.99657 * 89.99703 * 4 3 2 15 15 O 1.21284 * 119.99803 * 180.02562 * 14 4 3 16 16 C 1.50700 * 120.00333 * 0.02562 * 14 4 3 17 17 C 1.50703 * 109.47162 * 179.97438 * 16 14 4 18 18 C 1.39863 * 125.90145 * 125.23311 * 17 16 14 19 19 C 1.35312 * 107.92527 * 180.14385 * 18 17 16 20 20 N 1.34953 * 107.74266 * 359.64076 * 19 18 17 21 21 C 1.46502 * 126.03718 * 180.24977 * 20 19 18 22 22 C 1.52998 * 109.47046 * 125.00175 * 21 20 19 23 23 F 1.39895 * 109.47137 * 59.99869 * 22 21 20 24 24 F 1.39900 * 109.46781 * 179.97438 * 22 21 20 25 25 F 1.39894 * 109.47097 * 299.99646 * 22 21 20 26 26 N 1.30837 * 125.89875 * 304.97647 * 17 16 14 27 27 H 1.07999 * 120.00036 * 179.97438 * 1 2 3 28 28 H 1.07998 * 120.00095 * 359.97438 * 1 2 3 29 29 H 1.07998 * 120.00095 * 180.02562 * 2 1 3 30 30 H 1.08995 * 109.47376 * 4.99835 * 3 2 1 31 31 H 1.09001 * 109.47296 * 245.00249 * 3 2 1 32 32 H 1.09006 * 109.47363 * 29.99524 * 5 4 3 33 33 H 1.09000 * 109.47292 * 149.99853 * 5 4 3 34 34 H 0.97000 * 119.99792 * 180.02562 * 9 8 6 35 35 H 1.09000 * 109.47182 * 60.00400 * 16 14 4 36 36 H 1.09002 * 109.47148 * 299.99929 * 16 14 4 37 37 H 1.08008 * 126.03762 * 0.02562 * 18 17 16 38 38 H 1.08002 * 126.13302 * 179.91107 * 19 18 17 39 39 H 1.08999 * 109.46642 * 245.00527 * 21 20 19 40 40 H 1.08997 * 109.47253 * 4.99559 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1314 5 6 2.5589 1.8649 2.4248 6 6 2.8442 3.3437 2.4804 7 1 3.3040 3.8370 1.6369 8 6 2.5183 4.0667 3.6082 9 7 1.9589 3.4659 4.6357 10 14 2.8727 5.8994 3.6774 11 1 1.7006 6.6502 3.1601 12 1 3.1361 6.3001 5.0829 13 1 4.0634 6.2052 2.8442 14 6 4.2496 0.8662 0.9823 15 8 5.0197 0.8880 1.9191 16 6 4.6972 0.3184 -0.3483 17 6 6.1318 -0.1324 -0.2492 18 6 6.6157 -1.4048 -0.5700 19 6 7.9498 -1.4122 -0.3441 20 7 8.2991 -0.1853 0.0963 21 6 9.6513 0.2484 0.4566 22 6 10.0168 1.4985 -0.3462 23 9 9.1066 2.5209 -0.0573 24 9 11.3078 1.9130 -0.0016 25 9 9.9701 1.2050 -1.7132 26 7 7.1405 0.6004 0.1475 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1316 0.0895 31 1 2.6212 1.4027 -0.9314 32 1 1.4887 1.6966 2.5459 33 1 3.0990 1.3603 3.2259 34 1 1.7293 3.9747 5.4290 35 1 4.6126 1.0953 -1.1081 36 1 4.0680 -0.5284 -0.6228 37 1 6.0280 -2.2355 -0.9322 38 1 8.6165 -2.2485 -0.4940 39 1 9.6877 0.4770 1.5218 40 1 10.3604 -0.5482 0.2317 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000899137900.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:29 Heat of formation + Delta-G solvation = -80.406122 kcal Electronic energy + Delta-G solvation = -28427.882832 eV Core-core repulsion = 23830.708643 eV Total energy + Delta-G solvation = -4597.174188 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.27617 -47.86770 -47.65422 -41.24714 -38.90311 -35.61836 -34.42763 -33.14160 -32.02316 -31.11343 -29.80378 -28.10081 -26.85526 -25.31882 -23.74585 -22.65484 -21.33306 -20.25527 -19.76817 -18.83711 -18.64546 -18.19481 -17.99404 -16.64341 -16.48477 -16.21375 -15.49555 -15.04539 -14.80281 -14.67351 -14.53743 -14.39614 -14.25918 -14.19080 -13.92027 -13.81343 -13.80373 -13.43325 -13.25114 -12.84848 -12.56715 -12.40863 -12.32220 -12.10502 -11.64441 -11.58235 -11.19779 -10.98195 -10.83436 -10.54567 -10.44307 -10.12328 -9.57759 -9.32263 -9.14325 -8.84004 -8.61489 -8.37217 -7.60758 -5.98226 -4.02190 1.71550 2.06499 2.48288 2.51797 2.82289 3.34488 3.41067 3.44688 3.45731 3.53104 3.64433 3.92967 4.11301 4.42199 4.50706 4.63086 4.70658 4.78266 5.12419 5.19766 5.35651 5.39079 5.46515 5.57334 5.66360 5.72558 5.78026 6.00124 6.05150 6.24271 6.58075 6.80876 6.82237 6.95231 7.15402 7.51729 7.62691 7.74513 7.99005 8.30599 8.47861 8.97814 9.18135 9.62717 11.09860 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.010538 B = 0.003740 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2656.535494 B = 7485.556633 C = 9475.657909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.168 4.168 3 C 0.135 3.865 4 N -0.596 5.596 5 C 0.249 3.751 6 C -0.523 4.523 7 H 0.057 0.943 8 C 0.061 3.939 9 N -0.896 5.896 10 Si 0.896 3.104 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.274 1.274 14 C 0.509 3.491 15 O -0.523 6.523 16 C -0.064 4.064 17 C 0.100 3.900 18 C -0.254 4.254 19 C 0.053 3.947 20 N -0.392 5.392 21 C 0.101 3.899 22 C 0.443 3.557 23 F -0.158 7.158 24 F -0.180 7.180 25 F -0.181 7.181 26 N -0.241 5.241 27 H 0.093 0.907 28 H 0.098 0.902 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.032 0.968 33 H 0.042 0.958 34 H 0.262 0.738 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.151 0.849 38 H 0.175 0.825 39 H 0.129 0.871 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.352 -12.098 -14.221 21.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.187 4.187 3 C 0.011 3.989 4 N -0.328 5.328 5 C 0.130 3.870 6 C -0.562 4.562 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.535 5.535 10 Si 0.724 3.276 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.199 1.199 14 C 0.294 3.706 15 O -0.399 6.399 16 C -0.106 4.106 17 C -0.069 4.069 18 C -0.283 4.283 19 C -0.090 4.090 20 N -0.176 5.176 21 C -0.024 4.024 22 C 0.388 3.612 23 F -0.140 7.140 24 F -0.162 7.162 25 F -0.163 7.163 26 N -0.060 5.060 27 H 0.112 0.888 28 H 0.117 0.883 29 H 0.123 0.877 30 H 0.105 0.895 31 H 0.093 0.907 32 H 0.050 0.950 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.169 0.831 38 H 0.192 0.808 39 H 0.147 0.853 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 12.238 -10.832 -13.065 20.923 hybrid contribution -0.022 0.327 -0.253 0.414 sum 12.216 -10.505 -13.318 20.903 Atomic orbital electron populations 1.23812 0.95887 1.01717 1.00722 1.23443 0.96395 0.99069 0.99776 1.20595 0.93206 0.95311 0.89804 1.48187 1.10367 1.60625 1.13572 1.19239 0.95252 0.93690 0.78789 1.21457 1.40121 0.93383 1.01232 0.92438 1.24920 0.95145 0.98663 0.95349 1.69941 1.42335 1.36051 1.05199 0.86527 0.78630 0.85168 0.77305 1.20675 1.21161 1.19850 1.20012 0.82406 0.78976 0.89239 1.90709 1.52159 1.55429 1.41610 1.20219 0.89303 1.02575 0.98538 1.21802 0.94765 0.92695 0.97670 1.21390 0.94021 0.98809 1.14122 1.22460 0.97121 0.89215 1.00189 1.48182 1.05914 1.09800 1.53686 1.22663 0.82366 0.95488 1.01916 1.20645 0.74852 0.86897 0.78817 1.93336 1.66299 1.61407 1.92912 1.93208 1.39373 1.91596 1.91983 1.93203 1.96109 1.93333 1.33614 1.77771 0.90137 1.17004 1.21125 0.88845 0.88321 0.87732 0.89467 0.90722 0.95034 0.94009 0.92831 0.87699 0.87560 0.83103 0.80786 0.85271 0.84543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.32 14.32 29.01 0.42 -1.90 16 2 C -0.17 -2.29 9.74 -36.03 -0.35 -2.64 16 3 C 0.13 2.15 5.65 -5.19 -0.03 2.12 16 4 N -0.60 -12.66 2.44 -176.43 -0.43 -13.09 16 5 C 0.25 6.63 5.16 -5.19 -0.03 6.60 16 6 C -0.52 -15.14 9.39 -34.44 -0.32 -15.47 16 7 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 8 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 9 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 10 Si 0.90 22.46 29.54 -169.99 -5.02 17.44 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 14 C 0.51 10.78 7.66 -10.99 -0.08 10.69 16 15 O -0.52 -13.68 15.14 5.55 0.08 -13.59 16 16 C -0.06 -0.98 4.83 -29.03 -0.14 -1.12 16 17 C 0.10 1.60 6.01 -82.41 -0.50 1.11 16 18 C -0.25 -3.11 10.72 -40.02 -0.43 -3.54 16 19 C 0.05 0.56 11.45 -17.22 -0.20 0.36 16 20 N -0.39 -5.14 3.60 -61.37 -0.22 -5.36 16 21 C 0.10 0.92 6.51 -4.04 -0.03 0.89 16 22 C 0.44 5.05 3.28 37.16 0.12 5.17 16 23 F -0.16 -2.47 16.28 2.25 0.04 -2.43 16 24 F -0.18 -1.86 17.32 2.25 0.04 -1.82 16 25 F -0.18 -2.18 17.24 2.25 0.04 -2.14 16 26 N -0.24 -4.31 10.86 33.67 0.37 -3.94 16 27 H 0.09 1.01 8.06 -52.49 -0.42 0.59 16 28 H 0.10 1.24 7.84 -52.49 -0.41 0.83 16 29 H 0.10 1.30 7.83 -52.49 -0.41 0.89 16 30 H 0.09 1.46 7.72 -51.93 -0.40 1.06 16 31 H 0.07 0.97 6.44 -51.93 -0.33 0.64 16 32 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 33 H 0.04 1.26 7.42 -51.93 -0.39 0.88 16 34 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 35 H 0.11 1.43 7.40 -51.93 -0.38 1.05 16 36 H 0.11 1.23 7.75 -51.93 -0.40 0.83 16 37 H 0.15 1.39 8.06 -52.48 -0.42 0.96 16 38 H 0.18 0.99 8.06 -52.49 -0.42 0.57 16 39 H 0.13 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.14 0.58 8.07 -51.93 -0.42 0.16 16 LS Contribution 364.18 15.07 5.49 5.49 Total: -1.00 -38.14 364.18 -5.35 -43.49 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -4.80 Total: -1.61 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: -1.66 Total: 3.95 kcal Atomic # 7 Polarization: -49.23 SS G_CDS: 0.45 Total: -48.78 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: 0.08 Total: -13.59 kcal Atomic # 9 Polarization: -6.51 SS G_CDS: 0.11 Total: -6.39 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -38.14 -5.35 -43.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899137900.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.918 kcal (2) G-P(sol) polarization free energy of solvation -38.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds