Wall clock time and date at job start Tue Mar 31 2020 16:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 119.99822 * 2 1 4 4 N 1.46503 * 109.47216 * 125.00062 * 3 2 1 5 5 C 1.46492 * 119.99999 * 270.00234 * 4 3 2 6 6 C 1.50706 * 109.47031 * 269.99727 * 5 4 3 7 7 H 1.07993 * 120.00136 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99870 * 179.97438 * 6 5 4 9 9 N 1.31521 * 120.00099 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00028 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47366 * 90.00141 * 10 8 6 12 12 H 1.48503 * 109.47581 * 210.00488 * 10 8 6 13 13 H 1.48510 * 109.46950 * 330.00297 * 10 8 6 14 14 C 1.34774 * 119.99657 * 89.99703 * 4 3 2 15 15 O 1.21284 * 119.99803 * 180.02562 * 14 4 3 16 16 C 1.50700 * 120.00333 * 0.02562 * 14 4 3 17 17 C 1.50703 * 109.47162 * 179.97438 * 16 14 4 18 18 C 1.39863 * 125.90145 * 125.23311 * 17 16 14 19 19 C 1.35312 * 107.92527 * 180.14385 * 18 17 16 20 20 N 1.34953 * 107.74266 * 359.64076 * 19 18 17 21 21 C 1.46502 * 126.03718 * 180.24977 * 20 19 18 22 22 C 1.52998 * 109.47046 * 125.00175 * 21 20 19 23 23 F 1.39895 * 109.47137 * 59.99869 * 22 21 20 24 24 F 1.39900 * 109.46781 * 179.97438 * 22 21 20 25 25 F 1.39894 * 109.47097 * 299.99646 * 22 21 20 26 26 N 1.30837 * 125.89875 * 304.97647 * 17 16 14 27 27 H 1.07999 * 120.00036 * 179.97438 * 1 2 3 28 28 H 1.07998 * 120.00095 * 359.97438 * 1 2 3 29 29 H 1.07998 * 120.00095 * 180.02562 * 2 1 3 30 30 H 1.08995 * 109.47376 * 4.99835 * 3 2 1 31 31 H 1.09001 * 109.47296 * 245.00249 * 3 2 1 32 32 H 1.09006 * 109.47363 * 29.99524 * 5 4 3 33 33 H 1.09000 * 109.47292 * 149.99853 * 5 4 3 34 34 H 0.97000 * 119.99792 * 180.02562 * 9 8 6 35 35 H 1.09000 * 109.47182 * 60.00400 * 16 14 4 36 36 H 1.09002 * 109.47148 * 299.99929 * 16 14 4 37 37 H 1.08008 * 126.03762 * 0.02562 * 18 17 16 38 38 H 1.08002 * 126.13302 * 179.91107 * 19 18 17 39 39 H 1.08999 * 109.46642 * 245.00527 * 21 20 19 40 40 H 1.08997 * 109.47253 * 4.99559 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1314 5 6 2.5589 1.8649 2.4248 6 6 2.8442 3.3437 2.4804 7 1 3.3040 3.8370 1.6369 8 6 2.5183 4.0667 3.6082 9 7 1.9589 3.4659 4.6357 10 14 2.8727 5.8994 3.6774 11 1 1.7006 6.6502 3.1601 12 1 3.1361 6.3001 5.0829 13 1 4.0634 6.2052 2.8442 14 6 4.2496 0.8662 0.9823 15 8 5.0197 0.8880 1.9191 16 6 4.6972 0.3184 -0.3483 17 6 6.1318 -0.1324 -0.2492 18 6 6.6157 -1.4048 -0.5700 19 6 7.9498 -1.4122 -0.3441 20 7 8.2991 -0.1853 0.0963 21 6 9.6513 0.2484 0.4566 22 6 10.0168 1.4985 -0.3462 23 9 9.1066 2.5209 -0.0573 24 9 11.3078 1.9130 -0.0016 25 9 9.9701 1.2050 -1.7132 26 7 7.1405 0.6004 0.1475 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1316 0.0895 31 1 2.6212 1.4027 -0.9314 32 1 1.4887 1.6966 2.5459 33 1 3.0990 1.3603 3.2259 34 1 1.7293 3.9747 5.4290 35 1 4.6126 1.0953 -1.1081 36 1 4.0680 -0.5284 -0.6228 37 1 6.0280 -2.2355 -0.9322 38 1 8.6165 -2.2485 -0.4940 39 1 9.6877 0.4770 1.5218 40 1 10.3604 -0.5482 0.2317 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000899137900.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:29 Heat of formation + Delta-G solvation = -106.041489 kcal Electronic energy + Delta-G solvation = -28428.994464 eV Core-core repulsion = 23830.708643 eV Total energy + Delta-G solvation = -4598.285821 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.19881 -48.74383 -48.67445 -42.20027 -40.52067 -37.16268 -35.43642 -35.03829 -33.60794 -32.24419 -30.84917 -29.64159 -28.23436 -26.80423 -25.07337 -24.21901 -22.18953 -21.50683 -20.85993 -19.73202 -19.67539 -19.55610 -18.88016 -18.63169 -17.78907 -17.59177 -17.06746 -16.32398 -16.22795 -15.87919 -15.59292 -15.52367 -15.50211 -15.11809 -14.85791 -14.82226 -14.74406 -14.69358 -14.47061 -14.22718 -14.02395 -13.80643 -13.51476 -13.21281 -13.09574 -12.95917 -12.92344 -12.75212 -12.56475 -12.24062 -12.13790 -11.66786 -11.44530 -10.64476 -10.62345 -10.28270 -10.21032 -9.54838 -9.40796 -8.22441 -6.36515 0.83652 1.26460 1.33267 1.36774 1.40079 1.47378 1.67020 1.83146 1.91084 2.35991 2.61356 2.63122 2.88243 3.06740 3.08059 3.58158 3.81053 3.84940 4.00301 4.05576 4.16631 4.29425 4.34879 4.44928 4.57989 4.77297 4.87380 4.90962 5.01912 5.11157 5.15394 5.25122 5.54794 5.61189 5.77261 5.80603 6.02287 6.07245 6.08595 6.71085 6.76863 6.83217 7.29523 7.55202 8.84447 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.010538 B = 0.003740 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2656.535494 B = 7485.556633 C = 9475.657909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.180 4.180 3 C 0.131 3.869 4 N -0.601 5.601 5 C 0.268 3.732 6 C -0.541 4.541 7 H 0.049 0.951 8 C 0.009 3.991 9 N -0.927 5.927 10 Si 0.964 3.036 11 H -0.260 1.260 12 H -0.280 1.280 13 H -0.278 1.278 14 C 0.500 3.500 15 O -0.584 6.584 16 C -0.050 4.050 17 C 0.073 3.927 18 C -0.268 4.268 19 C 0.070 3.930 20 N -0.398 5.398 21 C 0.098 3.902 22 C 0.441 3.559 23 F -0.190 7.190 24 F -0.175 7.175 25 F -0.185 7.185 26 N -0.311 5.311 27 H 0.117 0.883 28 H 0.094 0.906 29 H 0.122 0.878 30 H 0.073 0.927 31 H 0.109 0.891 32 H 0.022 0.978 33 H -0.007 1.007 34 H 0.267 0.733 35 H 0.120 0.880 36 H 0.147 0.853 37 H 0.181 0.819 38 H 0.230 0.770 39 H 0.131 0.869 40 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.002 -13.700 -16.204 24.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.199 4.199 3 C 0.009 3.991 4 N -0.331 5.331 5 C 0.146 3.854 6 C -0.579 4.579 7 H 0.067 0.933 8 C -0.190 4.190 9 N -0.567 5.567 10 Si 0.788 3.212 11 H -0.185 1.185 12 H -0.205 1.205 13 H -0.203 1.203 14 C 0.288 3.712 15 O -0.464 6.464 16 C -0.091 4.091 17 C -0.095 4.095 18 C -0.297 4.297 19 C -0.073 4.073 20 N -0.182 5.182 21 C -0.025 4.025 22 C 0.385 3.615 23 F -0.172 7.172 24 F -0.156 7.156 25 F -0.167 7.167 26 N -0.132 5.132 27 H 0.135 0.865 28 H 0.113 0.887 29 H 0.140 0.860 30 H 0.091 0.909 31 H 0.127 0.873 32 H 0.040 0.960 33 H 0.011 0.989 34 H 0.076 0.924 35 H 0.138 0.862 36 H 0.165 0.835 37 H 0.198 0.802 38 H 0.246 0.754 39 H 0.149 0.851 40 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 12.853 -12.441 -15.101 23.409 hybrid contribution -0.182 0.786 0.359 0.883 sum 12.670 -11.654 -14.742 22.665 Atomic orbital electron populations 1.24036 0.95683 1.02727 0.98696 1.23356 0.96703 0.98346 1.01498 1.20863 0.92709 0.96469 0.89091 1.48180 1.11717 1.60190 1.13060 1.18620 0.93705 0.92403 0.80631 1.21713 1.40237 0.94678 1.01293 0.93281 1.25807 0.94740 1.03537 0.94874 1.70053 1.42987 1.37942 1.05760 0.85480 0.78785 0.79500 0.77427 1.18472 1.20489 1.20345 1.21086 0.81395 0.77832 0.90911 1.90666 1.53707 1.57804 1.44227 1.20210 0.90200 1.04155 0.94521 1.22098 0.94550 0.94452 0.98400 1.21798 0.95138 0.98097 1.14647 1.23348 0.97488 0.89265 0.97154 1.48416 1.05972 1.10357 1.53437 1.23077 0.81863 0.96001 1.01559 1.21020 0.74458 0.87036 0.78938 1.93271 1.67628 1.63131 1.93155 1.93213 1.38824 1.91672 1.91901 1.93187 1.96118 1.93257 1.34104 1.77652 0.92212 1.19872 1.23461 0.86465 0.88726 0.86003 0.90850 0.87330 0.96025 0.98862 0.92446 0.86211 0.83485 0.80183 0.75408 0.85087 0.78896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.06 14.32 67.78 0.97 -3.09 16 2 C -0.18 -4.63 9.74 25.65 0.25 -4.38 16 3 C 0.13 4.10 5.65 85.63 0.48 4.59 16 4 N -0.60 -26.26 2.44 -830.50 -2.03 -28.29 16 5 C 0.27 15.02 5.16 85.64 0.44 15.46 16 6 C -0.54 -32.56 9.39 25.60 0.24 -32.32 16 7 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 8 C 0.01 0.55 5.46 84.65 0.46 1.02 16 9 N -0.93 -57.78 13.29 21.45 0.28 -57.49 16 10 Si 0.96 46.94 29.54 68.60 2.03 48.96 16 11 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 12 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 13 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 14 C 0.50 21.77 7.66 87.66 0.67 22.44 16 15 O -0.58 -32.25 15.14 -3.04 -0.05 -32.29 16 16 C -0.05 -1.47 4.83 29.10 0.14 -1.33 16 17 C 0.07 2.29 6.01 43.10 0.26 2.55 16 18 C -0.27 -5.82 10.72 21.99 0.24 -5.58 16 19 C 0.07 1.23 11.45 83.54 0.96 2.18 16 20 N -0.40 -9.76 3.60 -348.06 -1.25 -11.02 16 21 C 0.10 1.60 6.51 86.38 0.56 2.16 16 22 C 0.44 9.75 3.28 71.98 0.24 9.98 16 23 F -0.19 -6.17 16.28 44.97 0.73 -5.44 16 24 F -0.17 -3.45 17.32 44.97 0.78 -2.67 16 25 F -0.19 -4.25 17.24 44.97 0.78 -3.48 16 26 N -0.31 -11.22 10.86 -47.39 -0.51 -11.73 16 27 H 0.12 2.20 8.06 -2.91 -0.02 2.18 16 28 H 0.09 2.28 7.84 -2.91 -0.02 2.26 16 29 H 0.12 2.72 7.83 -2.91 -0.02 2.70 16 30 H 0.07 2.48 7.72 -2.39 -0.02 2.47 16 31 H 0.11 2.62 6.44 -2.39 -0.02 2.61 16 32 H 0.02 1.23 8.07 -2.38 -0.02 1.21 16 33 H -0.01 -0.44 7.42 -2.39 -0.02 -0.46 16 34 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 35 H 0.12 3.11 7.40 -2.39 -0.02 3.09 16 36 H 0.15 3.00 7.75 -2.39 -0.02 2.98 16 37 H 0.18 2.59 8.06 -2.91 -0.02 2.57 16 38 H 0.23 1.23 8.06 -2.91 -0.02 1.21 16 39 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.19 0.79 8.07 -2.39 -0.02 0.77 16 Total: -1.00 -90.69 364.18 7.73 -82.96 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: 1.07 Total: 6.81 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: 5.91 Total: 13.68 kcal Atomic # 7 Polarization: -105.02 SS G_CDS: -3.51 Total: -108.53 kcal Atomic # 8 Polarization: -32.25 SS G_CDS: -0.05 Total: -32.29 kcal Atomic # 9 Polarization: -13.88 SS G_CDS: 2.29 Total: -11.59 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.96 kcal Total: -90.69 7.73 -82.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899137900.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.081 kcal (2) G-P(sol) polarization free energy of solvation -90.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds