Wall clock time and date at job start Tue Mar 31 2020 16:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 113.99706 * 2 1 4 4 C 1.53006 * 109.47131 * 180.02562 * 3 2 1 5 5 N 1.46507 * 109.46814 * 64.99809 * 4 3 2 6 6 C 1.36806 * 119.99715 * 264.39754 * 5 4 3 7 7 H 1.07999 * 119.99584 * 129.13337 * 6 5 4 8 8 C 1.39094 * 120.00025 * 309.13152 * 6 5 4 9 9 N 1.31327 * 120.00161 * 351.26009 * 8 6 5 10 10 Si 1.86798 * 119.99991 * 171.25824 * 8 6 5 11 11 H 1.48498 * 109.47193 * 89.99902 * 10 8 6 12 12 H 1.48505 * 109.47574 * 210.00328 * 10 8 6 13 13 H 1.48502 * 109.46929 * 330.00214 * 10 8 6 14 14 C 1.34767 * 120.00063 * 84.40168 * 5 4 3 15 15 O 1.21582 * 119.99960 * 2.21466 * 14 5 4 16 16 C 1.47833 * 119.99976 * 182.21547 * 14 5 4 17 17 C 1.40494 * 119.73031 * 317.60592 * 16 14 5 18 18 C 1.36027 * 120.77934 * 179.97438 * 17 16 14 19 19 C 1.40122 * 119.87378 * 0.02562 * 18 17 16 20 20 C 1.41544 * 121.88622 * 179.97438 * 19 18 17 21 21 O 1.35284 * 120.86921 * 0.02562 * 20 19 18 22 22 N 1.32334 * 118.25871 * 180.02562 * 20 19 18 23 23 C 1.32426 * 121.53934 * 359.97438 * 22 20 19 24 24 C 1.50703 * 118.53829 * 180.28264 * 23 22 20 25 25 N 1.31113 * 122.92704 * 0.02562 * 23 22 20 26 26 C 1.34141 * 120.43804 * 359.97438 * 25 23 22 27 27 C 1.38665 * 119.72472 * 137.58510 * 16 14 5 28 28 H 1.08992 * 109.47431 * 60.00102 * 1 2 3 29 29 H 1.09006 * 109.47133 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46926 * 299.99932 * 1 2 3 31 31 H 1.08994 * 109.47635 * 60.00164 * 3 2 1 32 32 H 1.08998 * 109.47240 * 299.99936 * 3 2 1 33 33 H 1.09007 * 109.47002 * 305.00415 * 4 3 2 34 34 H 1.08993 * 109.47449 * 184.99960 * 4 3 2 35 35 H 0.97009 * 119.99881 * 179.97438 * 9 8 6 36 36 H 1.08000 * 119.60821 * 0.02562 * 17 16 14 37 37 H 1.07999 * 120.06818 * 180.02562 * 18 17 16 38 38 H 0.96700 * 114.00549 * 89.99648 * 21 20 19 39 39 H 1.08995 * 109.47340 * 269.73761 * 24 23 22 40 40 H 1.09008 * 109.47339 * 29.73512 * 24 23 22 41 41 H 1.08999 * 109.47016 * 149.73488 * 24 23 22 42 42 H 1.08001 * 120.31860 * 0.04859 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.2070 -0.7829 -1.3043 7 1 3.7536 -1.3792 -2.0822 8 6 5.0261 -1.3846 -0.3547 9 7 5.7129 -0.6437 0.4843 10 14 5.1493 -3.2468 -0.2729 11 1 6.2514 -3.7092 -1.1542 12 1 5.4254 -3.6638 1.1254 13 1 3.8688 -3.8478 -0.7250 14 6 4.1526 1.3212 -2.3538 15 8 3.9861 2.5242 -2.2979 16 6 4.5493 0.6884 -3.6297 17 6 5.5316 -0.3161 -3.6334 18 6 5.9125 -0.9130 -4.7948 19 6 5.3221 -0.5253 -6.0050 20 6 5.6864 -1.1173 -7.2381 21 8 6.6267 -2.0884 -7.2908 22 7 5.0830 -0.6959 -8.3379 23 6 4.1604 0.2534 -8.3015 24 6 3.5119 0.6772 -9.5942 25 7 3.7824 0.8377 -7.1902 26 6 4.3302 0.4861 -6.0173 27 6 3.9485 1.0909 -4.8128 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.6886 1.8464 0.8899 32 1 1.6885 1.8464 -0.8900 33 1 3.8514 0.5682 0.8409 34 1 3.9785 2.1766 0.0889 35 1 6.2839 -1.0634 1.1468 36 1 5.9891 -0.6184 -2.7030 37 1 6.6684 -1.6842 -4.7843 38 1 6.2734 -2.9836 -7.1970 39 1 4.0813 1.4953 -10.0352 40 1 3.4932 -0.1660 -10.2848 41 1 2.4923 1.0086 -9.3977 42 1 3.1941 1.8638 -4.8058 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000909560833.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:11 Heat of formation + Delta-G solvation = -43.215318 kcal Electronic energy + Delta-G solvation = -28491.802688 eV Core-core repulsion = 24438.097954 eV Total energy + Delta-G solvation = -4053.704734 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.25217 -39.18020 -37.79598 -37.35328 -36.67038 -34.91335 -33.04152 -31.89116 -31.81933 -30.64925 -29.32489 -27.89763 -25.94782 -25.30792 -24.47926 -22.94701 -22.41760 -21.64346 -19.81728 -18.85676 -18.48529 -17.65791 -16.74866 -16.23299 -15.94281 -15.61955 -15.42439 -15.07827 -14.63261 -14.52783 -14.40975 -14.13525 -13.76558 -13.61204 -13.27719 -13.21425 -12.81427 -12.52312 -12.44578 -12.20745 -12.06846 -11.70167 -11.53316 -11.38675 -11.23188 -11.18366 -11.09260 -10.92337 -10.59840 -10.49007 -10.36318 -10.20989 -9.30446 -9.17228 -9.08486 -8.86329 -8.62813 -8.00286 -7.55128 -6.51246 -4.30466 0.32307 0.86614 2.00970 2.97417 3.05827 3.14438 3.18663 3.30587 3.79138 3.94151 4.09914 4.28154 4.37526 4.44764 4.62781 4.83106 4.89058 4.99160 5.43447 5.48426 5.51375 5.52931 5.58951 5.65401 5.68380 5.72136 5.88650 5.91423 5.96956 6.00364 6.17170 6.17989 6.28708 6.43818 6.54981 6.67067 6.86505 6.95145 7.07845 7.23020 7.30699 7.32527 7.71399 7.88163 8.21021 8.23351 8.89660 9.24238 9.70511 10.51906 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.012265 B = 0.004222 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.280218 B = 6630.452533 C = 7860.023506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.366 6.366 3 C 0.050 3.950 4 C 0.123 3.877 5 N -0.415 5.415 6 C -0.326 4.326 7 H 0.085 0.915 8 C 0.052 3.948 9 N -0.859 5.859 10 Si 0.913 3.087 11 H -0.274 1.274 12 H -0.281 1.281 13 H -0.267 1.267 14 C 0.508 3.492 15 O -0.594 6.594 16 C -0.030 4.030 17 C -0.054 4.054 18 C -0.103 4.103 19 C -0.167 4.167 20 C 0.399 3.601 21 O -0.471 6.471 22 N -0.551 5.551 23 C 0.325 3.675 24 C -0.080 4.080 25 N -0.506 5.506 26 C 0.165 3.835 27 C -0.080 4.080 28 H 0.032 0.968 29 H 0.078 0.922 30 H 0.031 0.969 31 H 0.042 0.958 32 H 0.043 0.957 33 H 0.104 0.896 34 H 0.074 0.926 35 H 0.273 0.727 36 H 0.161 0.839 37 H 0.136 0.864 38 H 0.408 0.592 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.454 -3.262 -8.221 9.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C -0.028 4.028 4 C 0.000 4.000 5 N -0.131 5.131 6 C -0.455 4.455 7 H 0.103 0.897 8 C -0.156 4.156 9 N -0.494 5.494 10 Si 0.739 3.261 11 H -0.200 1.200 12 H -0.206 1.206 13 H -0.191 1.191 14 C 0.297 3.703 15 O -0.480 6.480 16 C -0.036 4.036 17 C -0.073 4.073 18 C -0.123 4.123 19 C -0.172 4.172 20 C 0.198 3.802 21 O -0.279 6.279 22 N -0.277 5.277 23 C 0.056 3.944 24 C -0.139 4.139 25 N -0.222 5.222 26 C 0.039 3.961 27 C -0.100 4.100 28 H 0.051 0.949 29 H 0.096 0.904 30 H 0.049 0.951 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.122 0.878 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.179 0.821 37 H 0.154 0.846 38 H 0.268 0.732 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -3.389 -2.072 -8.792 9.648 hybrid contribution 0.047 -1.540 1.059 1.870 sum -3.342 -3.612 -7.733 9.166 Atomic orbital electron populations 1.22650 0.83211 1.01815 0.98941 1.88114 1.17572 1.27696 1.95081 1.23057 0.96339 0.84430 0.98983 1.21407 0.89203 0.99134 0.90297 1.43092 1.55614 1.07395 1.07034 1.19257 1.28094 0.82258 1.15858 0.89743 1.25533 0.94052 0.99892 0.96130 1.69822 1.24876 1.36154 1.18520 0.86145 0.79038 0.82924 0.78020 1.19963 1.20611 1.19093 1.18382 0.81085 0.86059 0.84800 1.90659 1.57096 1.14266 1.85965 1.20268 0.94986 0.94353 0.94005 1.21659 0.94366 0.91908 0.99322 1.20748 0.99973 1.01184 0.90436 1.19629 1.00802 1.01616 0.95200 1.19571 0.84771 0.88802 0.87011 1.84610 1.30517 1.17883 1.94849 1.67589 1.10579 1.17183 1.32399 1.22783 0.89387 0.87757 0.94513 1.20532 1.00578 1.02213 0.90571 1.68542 1.28433 1.27291 0.97934 1.18668 0.92360 0.92693 0.92355 1.20951 1.00541 0.99909 0.88633 0.94920 0.90368 0.95058 0.93976 0.93903 0.87789 0.90786 0.91679 0.82128 0.84607 0.73180 0.89886 0.89889 0.89638 0.83973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.37 -7.36 10.44 -35.23 -0.37 -7.73 16 3 C 0.05 0.97 6.24 37.16 0.23 1.20 16 4 C 0.12 2.75 5.24 -4.03 -0.02 2.72 16 5 N -0.41 -9.79 2.38 -115.89 -0.28 -10.06 16 6 C -0.33 -7.62 5.85 -15.01 -0.09 -7.71 16 7 H 0.08 1.98 7.36 -52.49 -0.39 1.60 16 8 C 0.05 1.19 4.79 -17.45 -0.08 1.11 16 9 N -0.86 -20.91 11.80 55.50 0.66 -20.25 16 10 Si 0.91 18.24 29.56 -169.99 -5.03 13.21 16 11 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 12 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 13 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 14 C 0.51 12.02 7.22 -12.34 -0.09 11.93 16 15 O -0.59 -15.19 16.60 5.29 0.09 -15.10 16 16 C -0.03 -0.62 5.29 -104.96 -0.56 -1.18 16 17 C -0.05 -1.04 8.03 -39.53 -0.32 -1.35 16 18 C -0.10 -1.69 9.58 -39.67 -0.38 -2.07 16 19 C -0.17 -2.83 5.76 -106.62 -0.61 -3.44 16 20 C 0.40 6.11 7.89 -16.08 -0.13 5.98 16 21 O -0.47 -5.73 12.91 -17.54 -0.23 -5.96 16 22 N -0.55 -8.64 10.30 -10.39 -0.11 -8.74 16 23 C 0.32 4.99 7.62 -157.23 -1.20 3.79 16 24 C -0.08 -0.86 10.28 36.01 0.37 -0.49 16 25 N -0.51 -8.84 10.32 -8.81 -0.09 -8.93 16 26 C 0.17 3.05 6.61 -84.86 -0.56 2.49 16 27 C -0.08 -1.57 9.64 -38.73 -0.37 -1.94 16 28 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.10 2.46 6.22 -51.93 -0.32 2.14 16 34 H 0.07 1.67 7.56 -51.93 -0.39 1.27 16 35 H 0.27 6.32 8.31 -40.82 -0.34 5.98 16 36 H 0.16 3.27 6.16 -52.49 -0.32 2.95 16 37 H 0.14 1.85 7.70 -52.49 -0.40 1.45 16 38 H 0.41 2.79 9.06 45.56 0.41 3.21 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 41 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.14 2.76 8.06 -52.49 -0.42 2.34 16 LS Contribution 362.25 15.07 5.46 5.46 Total: -1.00 -30.27 362.25 -6.94 -37.21 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -4.36 Total: 8.27 kcal Atomic # 6 Polarization: 15.32 SS G_CDS: -2.69 Total: 12.63 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: 0.18 Total: -47.99 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: -0.51 Total: -28.79 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.03 Total: 13.21 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.27 -6.94 -37.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909560833.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.005 kcal (2) G-P(sol) polarization free energy of solvation -30.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds