Wall clock time and date at job start Tue Mar 31 2020 16:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 113.99706 * 2 1 4 4 C 1.53006 * 109.47131 * 180.02562 * 3 2 1 5 5 N 1.46507 * 109.46814 * 64.99809 * 4 3 2 6 6 C 1.36806 * 119.99715 * 264.39754 * 5 4 3 7 7 H 1.07999 * 119.99584 * 129.13337 * 6 5 4 8 8 C 1.39094 * 120.00025 * 309.13152 * 6 5 4 9 9 N 1.31327 * 120.00161 * 351.26009 * 8 6 5 10 10 Si 1.86798 * 119.99991 * 171.25824 * 8 6 5 11 11 H 1.48498 * 109.47193 * 89.99902 * 10 8 6 12 12 H 1.48505 * 109.47574 * 210.00328 * 10 8 6 13 13 H 1.48502 * 109.46929 * 330.00214 * 10 8 6 14 14 C 1.34767 * 120.00063 * 84.40168 * 5 4 3 15 15 O 1.21582 * 119.99960 * 2.21466 * 14 5 4 16 16 C 1.47833 * 119.99976 * 182.21547 * 14 5 4 17 17 C 1.40494 * 119.73031 * 317.60592 * 16 14 5 18 18 C 1.36027 * 120.77934 * 179.97438 * 17 16 14 19 19 C 1.40122 * 119.87378 * 0.02562 * 18 17 16 20 20 C 1.41544 * 121.88622 * 179.97438 * 19 18 17 21 21 O 1.35284 * 120.86921 * 0.02562 * 20 19 18 22 22 N 1.32334 * 118.25871 * 180.02562 * 20 19 18 23 23 C 1.32426 * 121.53934 * 359.97438 * 22 20 19 24 24 C 1.50703 * 118.53829 * 180.28264 * 23 22 20 25 25 N 1.31113 * 122.92704 * 0.02562 * 23 22 20 26 26 C 1.34141 * 120.43804 * 359.97438 * 25 23 22 27 27 C 1.38665 * 119.72472 * 137.58510 * 16 14 5 28 28 H 1.08992 * 109.47431 * 60.00102 * 1 2 3 29 29 H 1.09006 * 109.47133 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46926 * 299.99932 * 1 2 3 31 31 H 1.08994 * 109.47635 * 60.00164 * 3 2 1 32 32 H 1.08998 * 109.47240 * 299.99936 * 3 2 1 33 33 H 1.09007 * 109.47002 * 305.00415 * 4 3 2 34 34 H 1.08993 * 109.47449 * 184.99960 * 4 3 2 35 35 H 0.97009 * 119.99881 * 179.97438 * 9 8 6 36 36 H 1.08000 * 119.60821 * 0.02562 * 17 16 14 37 37 H 1.07999 * 120.06818 * 180.02562 * 18 17 16 38 38 H 0.96700 * 114.00549 * 89.99648 * 21 20 19 39 39 H 1.08995 * 109.47340 * 269.73761 * 24 23 22 40 40 H 1.09008 * 109.47339 * 29.73512 * 24 23 22 41 41 H 1.08999 * 109.47016 * 149.73488 * 24 23 22 42 42 H 1.08001 * 120.31860 * 0.04859 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.2070 -0.7829 -1.3043 7 1 3.7536 -1.3792 -2.0822 8 6 5.0261 -1.3846 -0.3547 9 7 5.7129 -0.6437 0.4843 10 14 5.1493 -3.2468 -0.2729 11 1 6.2514 -3.7092 -1.1542 12 1 5.4254 -3.6638 1.1254 13 1 3.8688 -3.8478 -0.7250 14 6 4.1526 1.3212 -2.3538 15 8 3.9861 2.5242 -2.2979 16 6 4.5493 0.6884 -3.6297 17 6 5.5316 -0.3161 -3.6334 18 6 5.9125 -0.9130 -4.7948 19 6 5.3221 -0.5253 -6.0050 20 6 5.6864 -1.1173 -7.2381 21 8 6.6267 -2.0884 -7.2908 22 7 5.0830 -0.6959 -8.3379 23 6 4.1604 0.2534 -8.3015 24 6 3.5119 0.6772 -9.5942 25 7 3.7824 0.8377 -7.1902 26 6 4.3302 0.4861 -6.0173 27 6 3.9485 1.0909 -4.8128 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.6886 1.8464 0.8899 32 1 1.6885 1.8464 -0.8900 33 1 3.8514 0.5682 0.8409 34 1 3.9785 2.1766 0.0889 35 1 6.2839 -1.0634 1.1468 36 1 5.9891 -0.6184 -2.7030 37 1 6.6684 -1.6842 -4.7843 38 1 6.2734 -2.9836 -7.1970 39 1 4.0813 1.4953 -10.0352 40 1 3.4932 -0.1660 -10.2848 41 1 2.4923 1.0086 -9.3977 42 1 3.1941 1.8638 -4.8058 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000909560833.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:10 Heat of formation + Delta-G solvation = -65.799006 kcal Electronic energy + Delta-G solvation = -28492.781990 eV Core-core repulsion = 24438.097954 eV Total energy + Delta-G solvation = -4054.684036 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.53967 -40.87595 -38.95140 -38.74622 -38.17241 -36.71959 -34.30035 -33.61790 -33.17415 -31.97949 -30.90732 -29.09829 -27.31004 -26.99330 -25.97342 -24.18630 -23.89391 -23.11536 -21.49119 -20.17044 -19.88038 -18.96246 -18.36366 -17.73885 -17.32615 -17.19594 -16.88302 -16.49144 -16.27347 -16.05775 -15.79657 -15.50258 -15.17892 -15.02728 -14.84843 -14.46496 -14.00778 -13.91478 -13.61254 -13.53686 -13.36645 -13.22156 -13.00401 -12.84385 -12.68627 -12.66267 -12.61580 -12.47761 -12.08782 -11.88384 -11.82831 -11.63361 -11.06158 -10.65838 -10.52669 -10.38819 -10.18045 -9.45990 -9.28681 -8.28619 -6.14186 -0.97970 -0.49033 0.64568 1.43916 1.52034 1.59354 1.61979 2.11511 2.24674 2.30474 2.66689 2.90488 2.96339 3.04178 3.12740 3.21163 3.54683 3.81118 3.98281 4.13310 4.21401 4.23566 4.34717 4.37992 4.49978 4.55005 4.57977 4.64864 4.72072 4.74716 4.77646 4.84438 4.90515 4.97743 5.18862 5.25757 5.34358 5.40857 5.47665 5.57485 5.90556 6.00522 6.36659 6.39485 6.46583 6.99731 7.09117 7.42575 7.89941 8.75690 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.012265 B = 0.004222 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.280218 B = 6630.452533 C = 7860.023506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.397 6.397 3 C 0.061 3.939 4 C 0.122 3.878 5 N -0.420 5.420 6 C -0.330 4.330 7 H 0.081 0.919 8 C 0.020 3.980 9 N -0.890 5.890 10 Si 0.972 3.028 11 H -0.257 1.257 12 H -0.285 1.285 13 H -0.268 1.268 14 C 0.496 3.504 15 O -0.626 6.626 16 C -0.047 4.047 17 C -0.074 4.074 18 C -0.072 4.072 19 C -0.180 4.180 20 C 0.420 3.580 21 O -0.466 6.466 22 N -0.556 5.556 23 C 0.328 3.672 24 C -0.080 4.080 25 N -0.532 5.532 26 C 0.155 3.845 27 C -0.087 4.087 28 H 0.036 0.964 29 H 0.094 0.906 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.031 0.969 33 H 0.089 0.911 34 H 0.061 0.939 35 H 0.274 0.726 36 H 0.145 0.855 37 H 0.171 0.829 38 H 0.435 0.565 39 H 0.099 0.901 40 H 0.103 0.897 41 H 0.094 0.906 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.342 -5.498 -10.344 12.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.316 6.316 3 C -0.016 4.016 4 C -0.002 4.002 5 N -0.136 5.136 6 C -0.458 4.458 7 H 0.099 0.901 8 C -0.185 4.185 9 N -0.526 5.526 10 Si 0.795 3.205 11 H -0.182 1.182 12 H -0.210 1.210 13 H -0.193 1.193 14 C 0.286 3.714 15 O -0.515 6.515 16 C -0.053 4.053 17 C -0.093 4.093 18 C -0.092 4.092 19 C -0.186 4.186 20 C 0.218 3.782 21 O -0.277 6.277 22 N -0.283 5.283 23 C 0.060 3.940 24 C -0.138 4.138 25 N -0.249 5.249 26 C 0.030 3.970 27 C -0.107 4.107 28 H 0.055 0.945 29 H 0.113 0.887 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.049 0.951 33 H 0.107 0.893 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.163 0.837 37 H 0.188 0.812 38 H 0.300 0.700 39 H 0.118 0.882 40 H 0.121 0.879 41 H 0.113 0.887 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.290 -4.343 -10.918 12.202 hybrid contribution 0.012 -0.877 1.539 1.771 sum -3.279 -5.220 -9.380 11.224 Atomic orbital electron populations 1.22887 0.80569 1.03394 1.00242 1.88047 1.20507 1.27703 1.95332 1.22846 0.94335 0.84733 0.99722 1.21363 0.91365 0.97918 0.89536 1.43278 1.55330 1.07717 1.07289 1.19286 1.28391 0.82024 1.16113 0.90129 1.26175 0.93357 1.03516 0.95437 1.69922 1.25711 1.37751 1.19233 0.85255 0.79232 0.78159 0.77855 1.18183 1.21033 1.19270 1.18898 0.80725 0.85874 0.85949 1.90605 1.58636 1.15561 1.86715 1.20102 0.96540 0.95744 0.92909 1.21425 0.95066 0.92902 0.99859 1.21010 0.98979 1.00102 0.89092 1.19781 1.00881 1.01726 0.96257 1.19605 0.83792 0.88614 0.86168 1.84570 1.29556 1.18998 1.94590 1.67807 1.10943 1.17436 1.32110 1.23718 0.88492 0.86464 0.95345 1.20733 1.00876 1.03500 0.88647 1.68610 1.29515 1.28622 0.98166 1.18697 0.92887 0.93102 0.92305 1.20846 1.00683 1.00056 0.89119 0.94491 0.88715 0.92798 0.91069 0.95111 0.89310 0.92057 0.91616 0.83701 0.81157 0.70004 0.88230 0.87887 0.88721 0.85078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 11.01 113.37 1.25 1.99 16 2 O -0.40 -16.02 10.44 -148.98 -1.56 -17.57 16 3 C 0.06 2.45 6.24 71.98 0.45 2.90 16 4 C 0.12 5.69 5.24 86.38 0.45 6.14 16 5 N -0.42 -20.75 2.38 -638.83 -1.52 -22.27 16 6 C -0.33 -15.82 5.85 84.12 0.49 -15.33 16 7 H 0.08 3.87 7.36 -2.91 -0.02 3.85 16 8 C 0.02 0.92 4.79 84.97 0.41 1.33 16 9 N -0.89 -44.44 11.80 21.69 0.26 -44.18 16 10 Si 0.97 37.04 29.56 68.60 2.03 39.06 16 11 H -0.26 -9.06 7.11 99.48 0.71 -8.35 16 12 H -0.28 -10.97 7.11 99.48 0.71 -10.27 16 13 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 14 C 0.50 24.78 7.22 86.78 0.63 25.41 16 15 O -0.63 -34.03 16.60 -3.97 -0.07 -34.10 16 16 C -0.05 -2.04 5.29 -20.09 -0.11 -2.15 16 17 C -0.07 -2.86 8.03 22.31 0.18 -2.68 16 18 C -0.07 -2.23 9.58 22.21 0.21 -2.01 16 19 C -0.18 -5.79 5.76 -21.16 -0.12 -5.91 16 20 C 0.42 11.49 7.89 85.43 0.67 12.17 16 21 O -0.47 -9.28 12.91 -85.69 -1.11 -10.39 16 22 N -0.56 -15.69 10.30 -299.82 -3.09 -18.78 16 23 C 0.33 9.32 7.62 138.76 1.06 10.38 16 24 C -0.08 -1.46 10.28 71.24 0.73 -0.73 16 25 N -0.53 -18.13 10.32 -181.79 -1.88 -20.00 16 26 C 0.16 5.70 6.61 40.09 0.26 5.96 16 27 C -0.09 -3.53 9.64 22.82 0.22 -3.31 16 28 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.09 2.41 8.14 -2.38 -0.02 2.39 16 30 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 31 H 0.07 2.39 8.14 -2.39 -0.02 2.38 16 32 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.09 4.40 6.22 -2.38 -0.01 4.39 16 34 H 0.06 2.94 7.56 -2.39 -0.02 2.93 16 35 H 0.27 12.94 8.31 -92.70 -0.77 12.17 16 36 H 0.15 6.04 6.16 -2.91 -0.02 6.02 16 37 H 0.17 4.02 7.70 -2.91 -0.02 4.00 16 38 H 0.43 3.80 9.06 -74.06 -0.67 3.13 16 39 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.10 1.50 8.14 -2.38 -0.02 1.48 16 41 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.13 5.45 8.06 -2.91 -0.02 5.43 16 Total: -1.00 -67.64 362.25 0.27 -67.37 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: 0.41 Total: 26.71 kcal Atomic # 6 Polarization: 27.36 SS G_CDS: 6.79 Total: 34.15 kcal Atomic # 7 Polarization: -99.00 SS G_CDS: -6.23 Total: -105.23 kcal Atomic # 8 Polarization: -59.33 SS G_CDS: -2.73 Total: -62.06 kcal Atomic # 14 Polarization: 37.04 SS G_CDS: 2.03 Total: 39.06 kcal Total: -67.64 0.27 -67.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909560833.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.571 kcal (2) G-P(sol) polarization free energy of solvation -67.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds