Wall clock time and date at job start Tue Mar 31 2020 16:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46927 * 2 1 4 4 C 1.52998 * 110.65411 * 298.53142 * 3 2 1 5 5 N 1.47301 * 110.60423 * 61.45236 * 3 2 1 6 6 C 1.34529 * 106.62573 * 118.52484 * 5 3 2 7 7 O 1.21534 * 123.77320 * 179.97438 * 6 5 3 8 8 N 1.33796 * 112.45296 * 0.02562 * 6 5 3 9 9 N 1.40098 * 124.17765 * 180.02562 * 8 6 5 10 10 C 1.29720 * 120.00085 * 174.60151 * 9 8 6 11 11 C 1.47511 * 119.99963 * 185.05797 * 10 9 8 12 12 C 1.39747 * 120.11984 * 359.97438 * 11 10 9 13 13 C 1.37985 * 119.98145 * 180.02562 * 12 11 10 14 14 C 1.38246 * 120.22472 * 359.97438 * 13 12 11 15 15 C 1.38983 * 120.25159 * 0.02562 * 14 13 12 16 16 O 1.35757 * 119.99192 * 179.97438 * 15 14 13 17 17 C 1.34832 * 116.99783 * 185.58588 * 16 15 14 18 18 H 1.07999 * 120.00026 * 354.96839 * 17 16 15 19 19 C 1.38651 * 120.00225 * 174.96492 * 17 16 15 20 20 N 1.31564 * 119.99957 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00177 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.46911 * 60.00063 * 21 19 17 23 23 H 1.48507 * 109.46900 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.46842 * 299.99834 * 21 19 17 25 25 C 1.38618 * 120.01075 * 359.67955 * 15 14 13 26 26 C 1.34764 * 111.64504 * 359.97438 * 8 6 5 27 27 O 1.21245 * 127.15811 * 180.02562 * 26 8 6 28 28 H 1.08999 * 109.46643 * 60.00466 * 1 2 3 29 29 H 1.08997 * 109.47261 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47343 * 300.00721 * 1 2 3 31 31 H 1.08997 * 109.47343 * 239.99279 * 2 1 3 32 32 H 1.08999 * 109.46643 * 119.99534 * 2 1 3 33 33 H 1.09003 * 109.47341 * 182.21597 * 4 3 2 34 34 H 1.09000 * 109.47783 * 302.21676 * 4 3 2 35 35 H 1.09003 * 109.47000 * 62.22123 * 4 3 2 36 36 H 0.97008 * 126.68984 * 298.78556 * 5 3 2 37 37 H 1.07998 * 120.00169 * 5.05176 * 10 9 8 38 38 H 1.08002 * 120.01247 * 359.97438 * 12 11 10 39 39 H 1.07994 * 119.88740 * 179.97438 * 13 12 11 40 40 H 1.07998 * 119.87940 * 180.02562 * 14 13 12 41 41 H 0.96990 * 120.00099 * 179.97438 * 20 19 17 42 42 H 1.07999 * 120.11219 * 180.32033 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5751 2.1792 -1.2578 5 7 1.5915 2.1508 1.2112 6 6 2.7020 2.5131 1.8786 7 8 2.6897 3.1212 2.9308 8 7 3.8215 2.1300 1.2540 9 7 5.1144 2.3791 1.7326 10 6 6.1413 1.8808 1.1164 11 6 7.4935 2.0487 1.6814 12 6 7.6711 2.7446 2.8802 13 6 8.9374 2.9004 3.4059 14 6 10.0330 2.3697 2.7510 15 6 9.8673 1.6758 1.5582 16 8 10.9470 1.1572 0.9191 17 6 10.7329 0.5975 -0.2887 18 1 9.7267 0.5033 -0.6695 19 6 11.8045 0.1430 -1.0420 20 7 13.0304 0.2583 -0.5784 21 14 11.5079 -0.6317 -2.7157 22 1 10.8362 0.3507 -3.6038 23 1 12.8073 -1.0323 -3.3130 24 1 10.6447 -1.8300 -2.5605 25 6 8.5992 1.5080 1.0241 26 6 3.5517 1.4741 0.1081 27 8 4.3517 1.0062 -0.6737 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.9810 3.1909 -1.2573 34 1 1.9270 1.6471 -2.1416 35 1 0.4861 2.2248 -1.2706 36 1 0.6742 2.3196 1.4777 37 1 6.0063 1.3428 0.1896 38 1 6.8177 3.1611 3.3946 39 1 9.0729 3.4389 4.3322 40 1 11.0215 2.4946 3.1677 41 1 13.7800 -0.0600 -1.1052 42 1 8.4680 0.9647 0.1000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000915948400.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:50 Heat of formation + Delta-G solvation = 7.480306 kcal Electronic energy + Delta-G solvation = -27518.887540 eV Core-core repulsion = 23467.381134 eV Total energy + Delta-G solvation = -4051.506407 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.83760 -39.21173 -38.97219 -37.70410 -36.81459 -36.12459 -34.03416 -32.47137 -32.12329 -30.10182 -29.95653 -28.82805 -26.23620 -25.42471 -24.30828 -23.67855 -21.85314 -21.52255 -21.04822 -19.90879 -18.31265 -17.79253 -17.16996 -17.09171 -16.76752 -16.11884 -15.98963 -15.41988 -15.13435 -14.67042 -14.60693 -14.48163 -14.30608 -13.82245 -13.75760 -13.64221 -13.18159 -12.89353 -12.79009 -12.71601 -12.59534 -12.48311 -11.94982 -11.94612 -11.70580 -11.49549 -11.39718 -10.97130 -10.95279 -10.83489 -10.75206 -10.48263 -9.90285 -9.77605 -9.56726 -9.39135 -8.86023 -8.09377 -7.33847 -6.48024 -4.08194 0.93576 1.29240 1.54404 2.23569 2.55711 2.68706 3.04929 3.12761 3.14758 3.16313 3.40640 3.93561 3.94651 4.14797 4.31535 4.51404 4.64902 4.71502 4.84109 4.94293 4.99788 5.04557 5.15197 5.17143 5.21064 5.36514 5.42089 5.52285 5.62970 5.66780 5.68549 5.87265 6.06129 6.19742 6.40193 6.48754 6.63084 6.67282 6.79420 6.99278 7.13480 7.15056 7.31240 7.45043 7.64256 7.94889 8.07738 8.97126 9.64140 10.69563 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.013470 B = 0.002985 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.122166 B = 9376.491298 C =11177.040841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C 0.120 3.880 4 C -0.148 4.148 5 N -0.718 5.718 6 C 0.723 3.277 7 O -0.517 6.517 8 N -0.435 5.435 9 N -0.251 5.251 10 C 0.161 3.839 11 C -0.036 4.036 12 C -0.159 4.159 13 C -0.087 4.087 14 C -0.162 4.162 15 C 0.145 3.855 16 O -0.174 6.174 17 C -0.395 4.395 18 H 0.092 0.908 19 C 0.042 3.958 20 N -0.861 5.861 21 Si 0.939 3.061 22 H -0.269 1.269 23 H -0.278 1.278 24 H -0.269 1.269 25 C -0.189 4.189 26 C 0.501 3.499 27 O -0.458 6.458 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.442 0.558 37 H 0.153 0.847 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.122 0.878 41 H 0.271 0.729 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.328 0.748 -1.195 24.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C 0.028 3.972 4 C -0.206 4.206 5 N -0.385 5.385 6 C 0.424 3.576 7 O -0.387 6.387 8 N -0.263 5.263 9 N -0.052 5.052 10 C -0.046 4.046 11 C -0.039 4.039 12 C -0.180 4.180 13 C -0.105 4.105 14 C -0.183 4.183 15 C 0.091 3.909 16 O -0.078 6.078 17 C -0.471 4.471 18 H 0.109 0.891 19 C -0.163 4.163 20 N -0.496 5.496 21 Si 0.764 3.236 22 H -0.194 1.194 23 H -0.202 1.202 24 H -0.194 1.194 25 C -0.211 4.211 26 C 0.286 3.714 27 O -0.328 6.328 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.110 0.890 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.287 0.713 37 H 0.169 0.831 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.140 0.860 41 H 0.081 0.919 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -23.783 1.310 -0.315 23.821 hybrid contribution -0.466 -0.781 -1.504 1.758 sum -24.249 0.530 -1.819 24.323 Atomic orbital electron populations 1.21786 0.93866 1.02915 1.02302 1.21753 0.97648 0.91821 1.04498 1.21577 0.91230 0.95986 0.88374 1.22033 1.03027 1.00762 0.94752 1.45580 1.07876 1.61152 1.23901 1.15214 0.79615 0.79556 0.83255 1.91014 1.84942 1.42084 1.20618 1.47134 1.06324 1.51224 1.21627 1.75545 0.86337 1.20820 1.22534 1.25649 0.91561 0.90461 0.96961 1.18008 0.88286 1.01566 0.96057 1.20927 0.97316 1.03182 0.96542 1.20657 0.91830 0.99063 0.98991 1.20475 0.99345 1.02558 0.95880 1.19167 0.87213 0.92109 0.92409 1.84013 1.28414 1.64306 1.31043 1.21265 0.94881 1.38908 0.92094 0.89063 1.25272 0.94301 0.97208 0.99516 1.70023 0.98313 1.43339 1.37913 0.85803 0.78058 0.79454 0.80304 1.19405 1.20249 1.19416 1.21244 0.91277 1.05895 1.02722 1.21684 0.91609 0.77163 0.80905 1.90747 1.53971 1.44134 1.43966 0.91708 0.91503 0.92406 0.88986 0.90678 0.91330 0.89536 0.89814 0.71267 0.83066 0.86070 0.86272 0.85992 0.91893 0.84706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.56 9.48 37.16 0.35 -0.21 16 2 C -0.12 -0.73 5.28 -26.73 -0.14 -0.87 16 3 C 0.12 0.96 1.00 -132.10 -0.13 0.83 16 4 C -0.15 -0.85 8.60 37.16 0.32 -0.53 16 5 N -0.72 -5.97 5.53 -52.94 -0.29 -6.26 16 6 C 0.72 9.87 8.77 -88.01 -0.77 9.09 16 7 O -0.52 -8.87 17.91 5.34 0.10 -8.77 16 8 N -0.43 -6.46 3.66 -15.79 -0.06 -6.51 16 9 N -0.25 -4.34 10.58 32.16 0.34 -4.00 16 10 C 0.16 2.79 10.28 -14.67 -0.15 2.64 16 11 C -0.04 -0.69 5.87 -105.07 -0.62 -1.30 16 12 C -0.16 -2.87 9.58 -39.11 -0.37 -3.24 16 13 C -0.09 -1.53 10.02 -39.67 -0.40 -1.93 16 14 C -0.16 -3.27 9.98 -39.30 -0.39 -3.67 16 15 C 0.14 3.36 6.64 -39.16 -0.26 3.10 16 16 O -0.17 -4.80 9.76 0.02 0.00 -4.80 16 17 C -0.40 -10.74 9.48 30.88 0.29 -10.44 16 18 H 0.09 2.27 5.20 -52.49 -0.27 2.00 16 19 C 0.04 1.12 5.49 -17.51 -0.10 1.03 16 20 N -0.86 -24.78 13.67 55.48 0.76 -24.03 16 21 Si 0.94 20.16 29.55 -169.99 -5.02 15.14 16 22 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 23 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 24 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 25 C -0.19 -3.99 8.90 -38.96 -0.35 -4.34 16 26 C 0.50 6.36 6.86 -10.55 -0.07 6.29 16 27 O -0.46 -6.76 15.06 5.59 0.08 -6.67 16 28 H 0.06 0.18 6.61 -51.93 -0.34 -0.17 16 29 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.19 7.20 -51.93 -0.37 -0.19 16 31 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.28 6.70 -51.93 -0.35 -0.07 16 36 H 0.44 2.33 8.25 -40.82 -0.34 2.00 16 37 H 0.15 2.55 5.11 -52.49 -0.27 2.28 16 38 H 0.12 2.09 7.55 -52.49 -0.40 1.69 16 39 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 40 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 41 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 42 H 0.14 2.81 5.64 -52.49 -0.30 2.51 16 LS Contribution 360.67 15.07 5.44 5.44 Total: -1.00 -33.44 360.67 -6.18 -39.62 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -4.73 Total: 4.41 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -2.79 Total: -3.56 kcal Atomic # 7 Polarization: -41.55 SS G_CDS: 0.75 Total: -40.80 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: 0.18 Total: -20.24 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.44 -6.18 -39.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915948400.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.101 kcal (2) G-P(sol) polarization free energy of solvation -33.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds