Wall clock time and date at job start Tue Mar 31 2020 16:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46927 * 2 1 4 4 C 1.52998 * 110.65411 * 298.53142 * 3 2 1 5 5 N 1.47301 * 110.60423 * 61.45236 * 3 2 1 6 6 C 1.34529 * 106.62573 * 118.52484 * 5 3 2 7 7 O 1.21534 * 123.77320 * 179.97438 * 6 5 3 8 8 N 1.33796 * 112.45296 * 0.02562 * 6 5 3 9 9 N 1.40098 * 124.17765 * 180.02562 * 8 6 5 10 10 C 1.29720 * 120.00085 * 174.60151 * 9 8 6 11 11 C 1.47511 * 119.99963 * 185.05797 * 10 9 8 12 12 C 1.39747 * 120.11984 * 359.97438 * 11 10 9 13 13 C 1.37985 * 119.98145 * 180.02562 * 12 11 10 14 14 C 1.38246 * 120.22472 * 359.97438 * 13 12 11 15 15 C 1.38983 * 120.25159 * 0.02562 * 14 13 12 16 16 O 1.35757 * 119.99192 * 179.97438 * 15 14 13 17 17 C 1.34832 * 116.99783 * 185.58588 * 16 15 14 18 18 H 1.07999 * 120.00026 * 354.96839 * 17 16 15 19 19 C 1.38651 * 120.00225 * 174.96492 * 17 16 15 20 20 N 1.31564 * 119.99957 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00177 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.46911 * 60.00063 * 21 19 17 23 23 H 1.48507 * 109.46900 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.46842 * 299.99834 * 21 19 17 25 25 C 1.38618 * 120.01075 * 359.67955 * 15 14 13 26 26 C 1.34764 * 111.64504 * 359.97438 * 8 6 5 27 27 O 1.21245 * 127.15811 * 180.02562 * 26 8 6 28 28 H 1.08999 * 109.46643 * 60.00466 * 1 2 3 29 29 H 1.08997 * 109.47261 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47343 * 300.00721 * 1 2 3 31 31 H 1.08997 * 109.47343 * 239.99279 * 2 1 3 32 32 H 1.08999 * 109.46643 * 119.99534 * 2 1 3 33 33 H 1.09003 * 109.47341 * 182.21597 * 4 3 2 34 34 H 1.09000 * 109.47783 * 302.21676 * 4 3 2 35 35 H 1.09003 * 109.47000 * 62.22123 * 4 3 2 36 36 H 0.97008 * 126.68984 * 298.78556 * 5 3 2 37 37 H 1.07998 * 120.00169 * 5.05176 * 10 9 8 38 38 H 1.08002 * 120.01247 * 359.97438 * 12 11 10 39 39 H 1.07994 * 119.88740 * 179.97438 * 13 12 11 40 40 H 1.07998 * 119.87940 * 180.02562 * 14 13 12 41 41 H 0.96990 * 120.00099 * 179.97438 * 20 19 17 42 42 H 1.07999 * 120.11219 * 180.32033 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5751 2.1792 -1.2578 5 7 1.5915 2.1508 1.2112 6 6 2.7020 2.5131 1.8786 7 8 2.6897 3.1212 2.9308 8 7 3.8215 2.1300 1.2540 9 7 5.1144 2.3791 1.7326 10 6 6.1413 1.8808 1.1164 11 6 7.4935 2.0487 1.6814 12 6 7.6711 2.7446 2.8802 13 6 8.9374 2.9004 3.4059 14 6 10.0330 2.3697 2.7510 15 6 9.8673 1.6758 1.5582 16 8 10.9470 1.1572 0.9191 17 6 10.7329 0.5975 -0.2887 18 1 9.7267 0.5033 -0.6695 19 6 11.8045 0.1430 -1.0420 20 7 13.0304 0.2583 -0.5784 21 14 11.5079 -0.6317 -2.7157 22 1 10.8362 0.3507 -3.6038 23 1 12.8073 -1.0323 -3.3130 24 1 10.6447 -1.8300 -2.5605 25 6 8.5992 1.5080 1.0241 26 6 3.5517 1.4741 0.1081 27 8 4.3517 1.0062 -0.6737 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.9810 3.1909 -1.2573 34 1 1.9270 1.6471 -2.1416 35 1 0.4861 2.2248 -1.2706 36 1 0.6742 2.3196 1.4777 37 1 6.0063 1.3428 0.1896 38 1 6.8177 3.1611 3.3946 39 1 9.0729 3.4389 4.3322 40 1 11.0215 2.4946 3.1677 41 1 13.7800 -0.0600 -1.1052 42 1 8.4680 0.9647 0.1000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000915948400.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:49 Heat of formation + Delta-G solvation = -15.745190 kcal Electronic energy + Delta-G solvation = -27519.894673 eV Core-core repulsion = 23467.381134 eV Total energy + Delta-G solvation = -4052.513540 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.84197 -40.86268 -40.13492 -38.88703 -38.16556 -37.47689 -35.10647 -34.24992 -33.25583 -31.53221 -30.56228 -30.41271 -27.46820 -26.91439 -25.49992 -24.64630 -23.38235 -22.85756 -21.84692 -21.22337 -19.90845 -19.17645 -18.43900 -18.22574 -18.14071 -17.15218 -16.93648 -16.80667 -16.36455 -16.11874 -16.00676 -15.60188 -15.56197 -15.37735 -15.19791 -14.48750 -14.37305 -14.23685 -13.99476 -13.77620 -13.56297 -13.31860 -13.18556 -13.00693 -12.80158 -12.57573 -12.54929 -12.41286 -12.36825 -12.13664 -11.97041 -11.84945 -11.36518 -11.18239 -10.76713 -10.67469 -10.60728 -9.61955 -9.07204 -8.46031 -6.14728 -0.48409 0.22799 0.44511 0.63582 1.11813 1.37137 1.47382 1.52483 1.87534 1.88871 2.18605 2.51738 2.82532 2.98578 3.14531 3.37381 3.47382 3.57059 3.61248 3.88826 4.11434 4.23937 4.26086 4.29733 4.36039 4.50058 4.53754 4.62518 4.68608 4.75883 4.97989 4.99171 5.04514 5.06648 5.13355 5.15374 5.36434 5.40537 5.55314 5.59355 5.59983 5.67491 5.78703 6.00432 6.04689 6.33265 6.98534 6.99354 7.75567 8.76367 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.013470 B = 0.002985 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.122166 B = 9376.491298 C =11177.040841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C 0.133 3.867 4 C -0.146 4.146 5 N -0.686 5.686 6 C 0.718 3.282 7 O -0.557 6.557 8 N -0.445 5.445 9 N -0.262 5.262 10 C 0.159 3.841 11 C -0.036 4.036 12 C -0.145 4.145 13 C -0.072 4.072 14 C -0.168 4.168 15 C 0.112 3.888 16 O -0.223 6.223 17 C -0.416 4.416 18 H 0.102 0.898 19 C -0.018 4.018 20 N -0.918 5.918 21 Si 1.013 2.987 22 H -0.258 1.258 23 H -0.271 1.271 24 H -0.257 1.257 25 C -0.195 4.195 26 C 0.492 3.508 27 O -0.481 6.481 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.096 0.904 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.092 0.908 35 H 0.119 0.881 36 H 0.459 0.541 37 H 0.154 0.846 38 H 0.138 0.862 39 H 0.163 0.837 40 H 0.128 0.872 41 H 0.273 0.727 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.327 0.918 -1.769 28.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.155 4.155 3 C 0.042 3.958 4 C -0.203 4.203 5 N -0.354 5.354 6 C 0.419 3.581 7 O -0.431 6.431 8 N -0.275 5.275 9 N -0.064 5.064 10 C -0.049 4.049 11 C -0.039 4.039 12 C -0.166 4.166 13 C -0.089 4.089 14 C -0.188 4.188 15 C 0.062 3.938 16 O -0.130 6.130 17 C -0.492 4.492 18 H 0.120 0.880 19 C -0.216 4.216 20 N -0.555 5.555 21 Si 0.832 3.168 22 H -0.182 1.182 23 H -0.196 1.196 24 H -0.182 1.182 25 C -0.217 4.217 26 C 0.280 3.720 27 O -0.352 6.352 28 H 0.101 0.899 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.115 0.885 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.111 0.889 35 H 0.137 0.863 36 H 0.309 0.691 37 H 0.170 0.830 38 H 0.155 0.845 39 H 0.180 0.820 40 H 0.146 0.854 41 H 0.082 0.918 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -27.883 1.487 -0.883 27.937 hybrid contribution 0.477 -0.704 -1.132 1.415 sum -27.406 0.783 -2.015 27.492 Atomic orbital electron populations 1.21810 0.91359 1.03814 1.03555 1.21812 0.99649 0.89827 1.04203 1.21748 0.87328 0.97716 0.89020 1.22126 1.05221 0.99776 0.93219 1.45474 1.07363 1.59531 1.23082 1.15437 0.80282 0.79394 0.83025 1.90986 1.85507 1.44129 1.22434 1.47271 1.05530 1.51919 1.22755 1.75268 0.87577 1.20183 1.23341 1.25379 0.90980 0.91331 0.97211 1.18120 0.88578 1.00939 0.96222 1.21258 0.98144 1.01478 0.95728 1.21073 0.90445 0.97637 0.99781 1.20761 1.00782 1.02181 0.95059 1.19676 0.87266 0.93327 0.93544 1.83980 1.30460 1.66683 1.31878 1.21758 0.95700 1.39130 0.92564 0.88046 1.26503 0.93808 0.97633 1.03654 1.70163 0.99436 1.45926 1.40007 0.84730 0.78323 0.78818 0.74930 1.18241 1.19595 1.18164 1.21216 0.91329 1.06311 1.02824 1.22509 0.93841 0.75995 0.79691 1.90730 1.55295 1.44833 1.44384 0.89913 0.90911 0.91670 0.88518 0.91952 0.92252 0.88889 0.86271 0.69119 0.82969 0.84452 0.81972 0.85383 0.91781 0.85294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.49 9.48 71.98 0.68 0.19 16 2 C -0.12 -1.10 5.28 30.60 0.16 -0.94 16 3 C 0.13 1.78 1.00 2.99 0.00 1.78 16 4 C -0.15 -1.16 8.60 71.98 0.62 -0.54 16 5 N -0.69 -9.59 5.53 -439.83 -2.43 -12.02 16 6 C 0.72 18.62 8.77 179.44 1.57 20.20 16 7 O -0.56 -18.67 17.91 -3.82 -0.07 -18.73 16 8 N -0.45 -12.84 3.66 -441.10 -1.62 -14.46 16 9 N -0.26 -8.93 10.58 -52.16 -0.55 -9.48 16 10 C 0.16 5.50 10.28 87.45 0.90 6.40 16 11 C -0.04 -1.35 5.87 -20.16 -0.12 -1.47 16 12 C -0.15 -5.01 9.58 22.57 0.22 -4.79 16 13 C -0.07 -2.36 10.02 22.21 0.22 -2.14 16 14 C -0.17 -6.79 9.98 22.45 0.22 -6.56 16 15 C 0.11 5.42 6.64 22.54 0.15 5.57 16 16 O -0.22 -13.03 9.76 -22.84 -0.22 -13.25 16 17 C -0.42 -23.67 9.48 67.92 0.64 -23.02 16 18 H 0.10 5.29 5.20 -2.91 -0.02 5.28 16 19 C -0.02 -1.00 5.49 84.83 0.47 -0.53 16 20 N -0.92 -55.40 13.67 21.61 0.30 -55.10 16 21 Si 1.01 42.30 29.55 68.60 2.03 44.33 16 22 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 23 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 24 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 25 C -0.20 -8.47 8.90 22.67 0.20 -8.26 16 26 C 0.49 11.92 6.86 87.94 0.60 12.53 16 27 O -0.48 -13.94 15.06 -2.92 -0.04 -13.98 16 28 H 0.08 0.02 6.61 -2.39 -0.02 0.00 16 29 H 0.07 0.23 8.14 -2.39 -0.02 0.21 16 30 H 0.06 0.14 7.20 -2.39 -0.02 0.12 16 31 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.12 0.16 6.70 -2.39 -0.02 0.15 16 36 H 0.46 3.24 8.25 -92.70 -0.76 2.48 16 37 H 0.15 5.22 5.11 -2.91 -0.01 5.20 16 38 H 0.14 4.38 7.55 -2.91 -0.02 4.36 16 39 H 0.16 3.99 8.06 -2.91 -0.02 3.97 16 40 H 0.13 4.95 8.06 -2.91 -0.02 4.93 16 41 H 0.27 15.16 8.31 -92.72 -0.77 14.39 16 42 H 0.13 5.63 5.64 -2.91 -0.02 5.62 16 Total: -1.00 -78.04 360.67 4.26 -73.77 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: 0.32 Total: 20.54 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: 6.55 Total: -1.60 kcal Atomic # 7 Polarization: -86.77 SS G_CDS: -4.30 Total: -91.07 kcal Atomic # 8 Polarization: -45.63 SS G_CDS: -0.34 Total: -45.97 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Total: -78.04 4.26 -73.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915948400.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.029 kcal (2) G-P(sol) polarization free energy of solvation -78.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds