Wall clock time and date at job start Tue Mar 31 2020 16:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30387 * 126.35351 * 2 1 4 4 N 1.28514 * 110.14807 * 179.97438 * 3 2 1 5 5 C 1.31344 * 109.91675 * 0.02562 * 4 3 2 6 6 S 1.76208 * 126.50240 * 180.02562 * 5 4 3 7 7 N 1.36864 * 106.99683 * 359.97438 * 5 4 3 8 8 N 1.40100 * 127.18136 * 180.02562 * 7 5 4 9 9 C 1.29795 * 120.00324 * 89.97525 * 8 7 5 10 10 C 1.47362 * 119.99895 * 180.02562 * 9 8 7 11 11 C 1.39781 * 120.08043 * 359.72451 * 10 9 8 12 12 C 1.37715 * 119.91652 * 179.73914 * 11 10 9 13 13 C 1.39114 * 120.08139 * 0.53964 * 12 11 10 14 14 N 1.39400 * 119.92207 * 179.73976 * 13 12 11 15 15 C 1.46503 * 120.00161 * 179.97438 * 14 13 12 16 16 C 1.46498 * 119.99895 * 359.97438 * 14 13 12 17 17 C 1.50695 * 109.47246 * 89.99922 * 16 14 13 18 18 H 1.08002 * 120.00260 * 0.02562 * 17 16 14 19 19 C 1.37876 * 119.99954 * 179.97438 * 17 16 14 20 20 N 1.31513 * 120.00055 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 120.00032 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47044 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46800 * 120.00230 * 21 19 17 24 24 H 1.48502 * 109.47273 * 240.00338 * 21 19 17 25 25 C 1.39123 * 120.16053 * 359.71527 * 13 12 11 26 26 C 1.37706 * 120.07695 * 0.02562 * 25 13 12 27 27 H 1.09001 * 109.46917 * 90.02444 * 1 2 3 28 28 H 1.09003 * 109.47641 * 210.03034 * 1 2 3 29 29 H 1.09001 * 109.46887 * 330.02814 * 1 2 3 30 30 H 1.40994 * 100.00294 * 89.96909 * 6 5 4 31 31 H 1.08002 * 119.99846 * 359.97438 * 9 8 7 32 32 H 1.08001 * 120.04780 * 0.02562 * 11 10 9 33 33 H 1.08001 * 119.96376 * 180.25054 * 12 11 10 34 34 H 1.08998 * 109.47014 * 89.99510 * 15 14 13 35 35 H 1.08997 * 109.46999 * 210.00421 * 15 14 13 36 36 H 1.09003 * 109.46730 * 329.99935 * 15 14 13 37 37 H 1.08996 * 109.47244 * 210.00247 * 16 14 13 38 38 H 1.09001 * 109.46990 * 330.00142 * 16 14 13 39 39 H 0.97008 * 119.99755 * 179.97438 * 20 19 17 40 40 H 1.07994 * 119.95703 * 180.02562 * 25 13 12 41 41 H 1.08008 * 120.03963 * 179.97438 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2799 1.0501 0.0000 4 7 3.5139 0.6914 0.0005 5 6 3.5990 -0.6192 0.0004 6 16 5.0803 -1.5735 0.0016 7 7 2.3188 -1.1032 0.0003 8 7 1.9215 -2.4467 0.0006 9 6 1.7377 -3.0689 1.1247 10 6 1.3204 -4.4822 1.1249 11 6 1.1164 -5.1527 -0.0845 12 6 0.7316 -6.4750 -0.0804 13 6 0.5350 -7.1402 1.1254 14 7 0.1403 -8.4772 1.1257 15 6 -0.0667 -9.1796 2.3946 16 6 -0.0676 -9.1798 -0.1429 17 6 1.2238 -9.8230 -0.5784 18 1 2.1106 -9.7192 0.0293 19 6 1.2729 -10.5449 -1.7520 20 7 0.1929 -10.6717 -2.4917 21 14 2.8738 -11.3417 -2.2922 22 1 3.9330 -11.0516 -1.2926 23 1 2.6840 -12.8106 -2.3996 24 1 3.2769 -10.7966 -3.6135 25 6 0.7319 -6.4746 2.3311 26 6 1.1219 -5.1539 2.3347 27 1 -0.3633 -0.0004 -1.0277 28 1 -0.3634 -0.8897 0.5143 29 1 -0.3633 0.8903 0.5134 30 1 5.2852 -1.7058 1.3902 31 1 1.8914 -2.5511 2.0599 32 1 1.2648 -4.6357 -1.0211 33 1 0.5777 -6.9949 -1.0145 34 1 -1.1036 -9.0627 2.7096 35 1 0.1565 -10.2385 2.2642 36 1 0.5933 -8.7600 3.1539 37 1 -0.8300 -9.9476 -0.0123 38 1 -0.3938 -8.4693 -0.9025 39 1 0.2276 -11.1793 -3.3176 40 1 0.5788 -6.9944 3.2653 41 1 1.2742 -4.6376 3.2711 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000916305543.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:48 Heat of formation + Delta-G solvation = 162.747035 kcal Electronic energy + Delta-G solvation = -24468.130608 eV Core-core repulsion = 20898.402694 eV Total energy + Delta-G solvation = -3569.727914 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 331.116 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.01719 -39.41973 -37.28698 -35.77271 -33.08519 -32.72928 -32.19818 -30.93853 -29.37860 -28.09680 -27.97234 -25.80029 -24.13809 -23.00810 -22.35715 -22.00464 -20.84290 -19.85874 -18.52358 -17.46320 -17.20896 -16.72350 -16.47322 -15.41510 -15.28229 -15.06803 -14.53630 -14.42810 -14.22090 -14.05484 -13.35643 -13.31285 -13.15050 -13.01588 -12.90653 -12.48197 -12.34448 -12.07735 -11.74681 -11.67959 -11.56301 -11.48433 -11.30046 -11.11116 -10.89544 -10.76839 -10.51340 -10.15716 -9.97314 -9.78186 -9.37360 -9.12486 -8.74965 -8.66517 -8.57695 -6.84366 -6.23731 -4.35977 0.67315 0.77171 1.14043 1.76129 1.79849 2.16556 2.33256 2.62258 3.16170 3.25468 3.28567 3.74617 3.90442 4.15821 4.25207 4.27253 4.45361 4.91782 5.03692 5.05693 5.13098 5.15676 5.17119 5.37713 5.41717 5.49948 5.54627 5.64653 5.75756 5.77234 5.91146 6.01747 6.09362 6.22064 6.53054 6.60969 6.71850 6.88133 7.07199 7.13999 7.47751 7.61121 7.85459 7.94023 8.05211 8.31376 8.71559 9.32214 10.78711 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.013952 B = 0.002645 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.335306 B =10584.904652 C =11454.078762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.198 3.802 3 N -0.291 5.291 4 N -0.238 5.238 5 C 0.140 3.860 6 S 0.003 5.997 7 N -0.320 5.320 8 N -0.290 5.290 9 C 0.228 3.772 10 C -0.188 4.188 11 C -0.006 4.006 12 C -0.200 4.200 13 C 0.277 3.723 14 N -0.595 5.595 15 C 0.089 3.911 16 C 0.242 3.758 17 C -0.538 4.538 18 H 0.061 0.939 19 C 0.065 3.935 20 N -0.891 5.891 21 Si 0.898 3.102 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.281 1.281 25 C -0.231 4.231 26 C -0.018 4.018 27 H 0.093 0.907 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.113 0.887 32 H 0.129 0.871 33 H 0.142 0.858 34 H 0.044 0.956 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.036 0.964 38 H 0.041 0.959 39 H 0.266 0.734 40 H 0.124 0.876 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.246 12.496 10.499 16.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.071 4.071 3 N -0.136 5.136 4 N -0.084 5.084 5 C -0.235 4.235 6 S 0.153 5.847 7 N -0.097 5.097 8 N -0.095 5.095 9 C 0.027 3.973 10 C -0.195 4.195 11 C -0.027 4.027 12 C -0.222 4.222 13 C 0.163 3.837 14 N -0.295 5.295 15 C -0.055 4.055 16 C 0.122 3.878 17 C -0.577 4.577 18 H 0.080 0.920 19 C -0.139 4.139 20 N -0.530 5.530 21 Si 0.725 3.275 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.206 1.206 25 C -0.254 4.254 26 C -0.040 4.040 27 H 0.111 0.889 28 H 0.096 0.904 29 H 0.116 0.884 30 H 0.060 0.940 31 H 0.130 0.870 32 H 0.147 0.853 33 H 0.159 0.841 34 H 0.063 0.937 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.054 0.946 38 H 0.059 0.941 39 H 0.076 0.924 40 H 0.142 0.858 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.773 13.090 9.110 15.966 hybrid contribution -0.105 -1.246 1.302 1.805 sum 0.668 11.844 10.412 15.784 Atomic orbital electron populations 1.20256 0.83130 1.04394 1.04750 1.25418 0.97333 0.81794 1.02552 1.74167 0.96471 1.23238 1.19716 1.74785 1.11802 1.06957 1.14873 1.26081 0.89225 0.94423 1.13786 1.87213 1.20445 1.65465 1.11616 1.48283 1.05556 1.04795 1.51105 1.76197 1.22844 0.87448 1.23006 1.25375 0.83271 0.94465 0.94229 1.17793 1.17171 0.89869 0.94654 1.21087 0.91458 0.93223 0.96943 1.20939 1.08484 0.94785 0.98038 1.18279 0.87264 0.84492 0.93633 1.47429 1.66391 1.07424 1.08256 1.21650 0.99728 0.98243 0.85868 1.19486 0.97206 0.92108 0.78966 1.21511 0.96194 1.32966 1.07010 0.92036 1.24955 0.96780 0.95994 0.96134 1.69925 1.27877 1.40832 1.14327 0.86440 0.83249 0.78994 0.78819 1.19648 1.20854 1.20634 1.20517 1.12804 0.95361 0.96726 1.20767 0.93770 0.93608 0.95840 0.88887 0.90391 0.88433 0.94035 0.87018 0.85315 0.84056 0.93728 0.90764 0.92140 0.94622 0.94121 0.92445 0.85786 0.86354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.58 10.45 36.00 0.38 -0.20 16 2 C 0.20 2.60 8.20 -153.72 -1.26 1.34 16 3 N -0.29 -4.47 12.17 33.05 0.40 -4.07 16 4 N -0.24 -3.82 12.23 30.75 0.38 -3.45 16 5 C 0.14 2.04 8.53 -87.98 -0.75 1.29 16 6 S 0.00 0.04 26.26 -107.50 -2.82 -2.79 16 7 N -0.32 -4.46 3.47 -9.77 -0.03 -4.49 16 8 N -0.29 -3.82 10.59 32.14 0.34 -3.48 16 9 C 0.23 2.55 10.82 -14.70 -0.16 2.40 16 10 C -0.19 -2.34 5.87 -105.03 -0.62 -2.96 16 11 C -0.01 -0.09 9.57 -39.20 -0.37 -0.46 16 12 C -0.20 -3.41 9.18 -39.45 -0.36 -3.77 16 13 C 0.28 4.60 6.55 -83.76 -0.55 4.05 16 14 N -0.60 -10.78 2.98 -180.96 -0.54 -11.32 16 15 C 0.09 1.27 10.18 59.85 0.61 1.88 16 16 C 0.24 5.38 4.90 -5.20 -0.03 5.36 16 17 C -0.54 -13.43 9.39 -34.44 -0.32 -13.75 16 18 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -24.00 13.29 55.43 0.74 -23.27 16 21 Si 0.90 20.13 29.54 -169.99 -5.02 15.11 16 22 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 C -0.23 -3.06 9.18 -39.45 -0.36 -3.43 16 26 C -0.02 -0.21 9.78 -39.20 -0.38 -0.59 16 27 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.10 0.92 9.55 96.90 0.93 1.84 16 31 H 0.11 1.00 8.06 -52.49 -0.42 0.57 16 32 H 0.13 1.85 7.55 -52.49 -0.40 1.45 16 33 H 0.14 2.72 6.12 -52.49 -0.32 2.40 16 34 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 1.11 8.07 -51.93 -0.42 0.69 16 36 H 0.06 0.73 6.18 -51.93 -0.32 0.41 16 37 H 0.04 0.84 8.07 -51.93 -0.42 0.42 16 38 H 0.04 0.96 6.18 -51.93 -0.32 0.64 16 39 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 40 H 0.12 1.41 6.12 -52.49 -0.32 1.09 16 41 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16 LS Contribution 372.55 15.07 5.61 5.61 Total: -1.00 -29.41 372.55 -8.90 -38.31 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -3.67 Total: 1.12 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -4.28 Total: -7.29 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: 1.28 Total: -50.08 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Atomic # 16 Polarization: 0.04 SS G_CDS: -2.82 Total: -2.79 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.41 -8.90 -38.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916305543.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.055 kcal (2) G-P(sol) polarization free energy of solvation -29.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 171.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 162.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds