Wall clock time and date at job start Tue Mar 31 2020 16:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30387 * 126.35351 * 2 1 4 4 N 1.28514 * 110.14807 * 179.97438 * 3 2 1 5 5 C 1.31344 * 109.91675 * 0.02562 * 4 3 2 6 6 S 1.76208 * 126.50240 * 180.02562 * 5 4 3 7 7 N 1.36864 * 106.99683 * 359.97438 * 5 4 3 8 8 N 1.40100 * 127.18136 * 180.02562 * 7 5 4 9 9 C 1.29795 * 120.00324 * 89.97525 * 8 7 5 10 10 C 1.47362 * 119.99895 * 180.02562 * 9 8 7 11 11 C 1.39781 * 120.08043 * 359.72451 * 10 9 8 12 12 C 1.37715 * 119.91652 * 179.73914 * 11 10 9 13 13 C 1.39114 * 120.08139 * 0.53964 * 12 11 10 14 14 N 1.39400 * 119.92207 * 179.73976 * 13 12 11 15 15 C 1.46503 * 120.00161 * 179.97438 * 14 13 12 16 16 C 1.46498 * 119.99895 * 359.97438 * 14 13 12 17 17 C 1.50695 * 109.47246 * 89.99922 * 16 14 13 18 18 H 1.08002 * 120.00260 * 0.02562 * 17 16 14 19 19 C 1.37876 * 119.99954 * 179.97438 * 17 16 14 20 20 N 1.31513 * 120.00055 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 120.00032 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47044 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46800 * 120.00230 * 21 19 17 24 24 H 1.48502 * 109.47273 * 240.00338 * 21 19 17 25 25 C 1.39123 * 120.16053 * 359.71527 * 13 12 11 26 26 C 1.37706 * 120.07695 * 0.02562 * 25 13 12 27 27 H 1.09001 * 109.46917 * 90.02444 * 1 2 3 28 28 H 1.09003 * 109.47641 * 210.03034 * 1 2 3 29 29 H 1.09001 * 109.46887 * 330.02814 * 1 2 3 30 30 H 1.40994 * 100.00294 * 89.96909 * 6 5 4 31 31 H 1.08002 * 119.99846 * 359.97438 * 9 8 7 32 32 H 1.08001 * 120.04780 * 0.02562 * 11 10 9 33 33 H 1.08001 * 119.96376 * 180.25054 * 12 11 10 34 34 H 1.08998 * 109.47014 * 89.99510 * 15 14 13 35 35 H 1.08997 * 109.46999 * 210.00421 * 15 14 13 36 36 H 1.09003 * 109.46730 * 329.99935 * 15 14 13 37 37 H 1.08996 * 109.47244 * 210.00247 * 16 14 13 38 38 H 1.09001 * 109.46990 * 330.00142 * 16 14 13 39 39 H 0.97008 * 119.99755 * 179.97438 * 20 19 17 40 40 H 1.07994 * 119.95703 * 180.02562 * 25 13 12 41 41 H 1.08008 * 120.03963 * 179.97438 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2799 1.0501 0.0000 4 7 3.5139 0.6914 0.0005 5 6 3.5990 -0.6192 0.0004 6 16 5.0803 -1.5735 0.0016 7 7 2.3188 -1.1032 0.0003 8 7 1.9215 -2.4467 0.0006 9 6 1.7377 -3.0689 1.1247 10 6 1.3204 -4.4822 1.1249 11 6 1.1164 -5.1527 -0.0845 12 6 0.7316 -6.4750 -0.0804 13 6 0.5350 -7.1402 1.1254 14 7 0.1403 -8.4772 1.1257 15 6 -0.0667 -9.1796 2.3946 16 6 -0.0676 -9.1798 -0.1429 17 6 1.2238 -9.8230 -0.5784 18 1 2.1106 -9.7192 0.0293 19 6 1.2729 -10.5449 -1.7520 20 7 0.1929 -10.6717 -2.4917 21 14 2.8738 -11.3417 -2.2922 22 1 3.9330 -11.0516 -1.2926 23 1 2.6840 -12.8106 -2.3996 24 1 3.2769 -10.7966 -3.6135 25 6 0.7319 -6.4746 2.3311 26 6 1.1219 -5.1539 2.3347 27 1 -0.3633 -0.0004 -1.0277 28 1 -0.3634 -0.8897 0.5143 29 1 -0.3633 0.8903 0.5134 30 1 5.2852 -1.7058 1.3902 31 1 1.8914 -2.5511 2.0599 32 1 1.2648 -4.6357 -1.0211 33 1 0.5777 -6.9949 -1.0145 34 1 -1.1036 -9.0627 2.7096 35 1 0.1565 -10.2385 2.2642 36 1 0.5933 -8.7600 3.1539 37 1 -0.8300 -9.9476 -0.0123 38 1 -0.3938 -8.4693 -0.9025 39 1 0.2276 -11.1793 -3.3176 40 1 0.5788 -6.9944 3.2653 41 1 1.2742 -4.6376 3.2711 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000916305543.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:48 Heat of formation + Delta-G solvation = 148.058156 kcal Electronic energy + Delta-G solvation = -24468.767566 eV Core-core repulsion = 20898.402694 eV Total energy + Delta-G solvation = -3570.364871 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 331.116 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.05224 -40.57185 -38.38687 -37.00167 -34.83693 -33.75945 -33.26136 -32.08536 -30.60257 -29.58744 -28.88515 -27.09495 -25.52498 -24.24168 -23.48655 -23.14532 -21.96287 -20.96802 -19.49100 -18.66500 -18.46640 -18.30843 -17.60582 -16.87811 -16.30918 -16.17960 -15.98955 -15.41948 -15.39117 -15.31254 -14.55873 -14.36727 -14.13325 -14.05206 -13.86698 -13.76253 -13.43956 -13.25614 -13.13747 -13.05584 -12.74613 -12.68188 -12.58747 -12.51588 -12.35606 -12.20185 -11.86692 -11.65672 -11.53950 -10.77216 -10.65217 -10.46051 -10.38461 -9.83728 -9.51482 -8.40407 -7.93493 -6.38592 -0.31386 -0.17273 0.13707 0.65616 0.82283 1.22054 1.28420 1.36635 1.40358 1.50258 1.63301 2.31934 2.51802 3.02239 3.04330 3.06523 3.38772 3.57779 3.96584 4.07117 4.10748 4.19989 4.35014 4.46261 4.49015 4.55271 4.57381 4.68948 4.72897 4.78797 4.80397 4.97625 4.99938 5.08155 5.18014 5.23501 5.47452 5.53004 5.62847 5.67460 5.97475 6.03423 6.38362 6.51998 6.76259 6.80199 7.26136 7.33306 8.81587 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.013952 B = 0.002645 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.335306 B =10584.904652 C =11454.078762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.201 3.799 3 N -0.319 5.319 4 N -0.267 5.267 5 C 0.133 3.867 6 S -0.007 6.007 7 N -0.325 5.325 8 N -0.308 5.308 9 C 0.242 3.758 10 C -0.176 4.176 11 C -0.010 4.010 12 C -0.228 4.228 13 C 0.252 3.748 14 N -0.614 5.614 15 C 0.088 3.912 16 C 0.259 3.741 17 C -0.540 4.540 18 H 0.053 0.947 19 C 0.015 3.985 20 N -0.925 5.925 21 Si 0.957 3.043 22 H -0.268 1.268 23 H -0.277 1.277 24 H -0.281 1.281 25 C -0.223 4.223 26 C 0.000 4.000 27 H 0.101 0.899 28 H 0.089 0.911 29 H 0.116 0.884 30 H 0.125 0.875 31 H 0.149 0.851 32 H 0.123 0.877 33 H 0.102 0.898 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.089 0.911 37 H 0.015 0.985 38 H 0.017 0.983 39 H 0.267 0.733 40 H 0.151 0.849 41 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.397 13.692 13.375 19.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.068 4.068 3 N -0.163 5.163 4 N -0.113 5.113 5 C -0.242 4.242 6 S 0.142 5.858 7 N -0.102 5.102 8 N -0.113 5.113 9 C 0.040 3.960 10 C -0.183 4.183 11 C -0.031 4.031 12 C -0.251 4.251 13 C 0.142 3.858 14 N -0.317 5.317 15 C -0.054 4.054 16 C 0.137 3.863 17 C -0.579 4.579 18 H 0.071 0.929 19 C -0.184 4.184 20 N -0.564 5.564 21 Si 0.782 3.218 22 H -0.192 1.192 23 H -0.202 1.202 24 H -0.207 1.207 25 C -0.246 4.246 26 C -0.021 4.021 27 H 0.119 0.881 28 H 0.108 0.892 29 H 0.135 0.865 30 H 0.089 0.911 31 H 0.166 0.834 32 H 0.141 0.859 33 H 0.120 0.880 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.107 0.893 37 H 0.033 0.967 38 H 0.035 0.965 39 H 0.076 0.924 40 H 0.169 0.831 41 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 1.423 14.327 12.015 18.753 hybrid contribution -0.286 -1.460 0.454 1.556 sum 1.137 12.867 12.469 17.953 Atomic orbital electron populations 1.20475 0.80292 1.05908 1.05704 1.26157 0.98735 0.81092 1.00809 1.74100 0.96639 1.24442 1.21157 1.74717 1.12471 1.07963 1.16130 1.26367 0.90192 0.94322 1.13368 1.87213 1.19731 1.64713 1.14143 1.48376 1.05459 1.05080 1.51264 1.76207 1.23281 0.87331 1.24433 1.25465 0.81784 0.93494 0.95274 1.17931 1.15717 0.90421 0.94198 1.21065 0.91494 0.92349 0.98145 1.20737 1.11154 0.96009 0.97166 1.18542 0.88483 0.84037 0.94765 1.47202 1.68551 1.08307 1.07644 1.21792 1.01506 0.97268 0.84835 1.18916 0.95343 0.91077 0.80919 1.21765 0.96880 1.32470 1.06767 0.92872 1.25716 0.99564 0.96759 0.96407 1.70026 1.29669 1.41938 1.14816 0.85520 0.79812 0.78255 0.78190 1.19248 1.20209 1.20660 1.20823 1.11567 0.96080 0.96100 1.21234 0.91024 0.92681 0.97153 0.88106 0.89194 0.86519 0.91106 0.83400 0.85895 0.88019 0.92017 0.92286 0.89286 0.96696 0.96511 0.92410 0.83145 0.81343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.97 10.45 71.24 0.74 -0.22 16 2 C 0.20 4.91 8.20 137.54 1.13 6.04 16 3 N -0.32 -9.49 12.17 -49.36 -0.60 -10.09 16 4 N -0.27 -8.38 12.23 -56.61 -0.69 -9.07 16 5 C 0.13 3.69 8.53 179.43 1.53 5.22 16 6 S -0.01 -0.16 26.26 -56.49 -1.48 -1.64 16 7 N -0.32 -8.36 3.47 -184.83 -0.64 -9.01 16 8 N -0.31 -7.34 10.59 -52.24 -0.55 -7.89 16 9 C 0.24 4.43 10.82 87.40 0.95 5.38 16 10 C -0.18 -3.80 5.87 -20.13 -0.12 -3.91 16 11 C -0.01 -0.27 9.57 22.52 0.22 -0.06 16 12 C -0.23 -8.06 9.18 22.36 0.21 -7.86 16 13 C 0.25 8.26 6.55 38.36 0.25 8.52 16 14 N -0.61 -22.60 2.98 -726.44 -2.17 -24.76 16 15 C 0.09 2.43 10.18 127.77 1.30 3.73 16 16 C 0.26 12.21 4.90 85.63 0.42 12.63 16 17 C -0.54 -28.00 9.39 25.60 0.24 -27.76 16 18 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 19 C 0.02 0.81 5.46 84.65 0.46 1.27 16 20 N -0.92 -51.77 13.29 21.45 0.28 -51.49 16 21 Si 0.96 42.10 29.54 68.60 2.03 44.12 16 22 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 23 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 24 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 25 C -0.22 -5.12 9.18 22.36 0.21 -4.92 16 26 C 0.00 0.00 9.78 22.52 0.22 0.22 16 27 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.12 2.02 9.55 73.80 0.70 2.73 16 31 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 32 H 0.12 3.60 7.55 -2.91 -0.02 3.58 16 33 H 0.10 4.34 6.12 -2.91 -0.02 4.32 16 34 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.06 1.77 8.07 -2.39 -0.02 1.75 16 36 H 0.09 1.88 6.18 -2.39 -0.01 1.87 16 37 H 0.02 0.75 8.07 -2.39 -0.02 0.73 16 38 H 0.02 0.87 6.18 -2.39 -0.01 0.85 16 39 H 0.27 14.14 8.31 -92.70 -0.77 13.37 16 40 H 0.15 2.66 6.12 -2.91 -0.02 2.64 16 41 H 0.17 1.41 8.06 -2.91 -0.02 1.38 16 Total: -1.00 -67.87 372.55 5.71 -62.16 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: 1.78 Total: 9.40 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: 7.75 Total: -1.72 kcal Atomic # 7 Polarization: -107.95 SS G_CDS: -4.37 Total: -112.31 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.12 kcal Atomic # 16 Polarization: -0.16 SS G_CDS: -1.48 Total: -1.64 kcal Total: -67.87 5.71 -62.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916305543.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.219 kcal (2) G-P(sol) polarization free energy of solvation -67.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds