Wall clock time and date at job start Tue Mar 31 2020 15:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32165 * 120.53903 * 2 1 4 4 C 1.31859 * 120.96418 * 179.97438 * 3 2 1 5 5 C 1.50698 * 118.94688 * 180.02562 * 4 3 2 6 6 C 1.52994 * 109.47468 * 119.99950 * 5 4 3 7 7 C 1.53009 * 109.46827 * 239.99754 * 5 4 3 8 8 N 1.31878 * 122.09724 * 0.27300 * 4 3 2 9 9 C 1.32140 * 120.96798 * 359.44072 * 8 4 3 10 10 C 1.39926 * 120.53568 * 179.97438 * 2 1 3 11 11 C 1.47838 * 120.93946 * 0.04313 * 10 2 1 12 12 O 1.21551 * 119.99524 * 6.05740 * 11 10 2 13 13 N 1.34779 * 119.99802 * 186.04947 * 11 10 2 14 14 C 1.46505 * 119.99686 * 180.02562 * 13 11 10 15 15 H 1.08999 * 109.46813 * 34.99860 * 14 13 11 16 16 C 1.50690 * 109.47178 * 155.00205 * 14 13 11 17 17 H 1.08005 * 119.99967 * 359.97438 * 16 14 13 18 18 C 1.37872 * 120.00412 * 180.02562 * 16 14 13 19 19 N 1.31518 * 119.99833 * 359.97438 * 18 16 14 20 20 Si 1.86802 * 120.00329 * 180.02562 * 18 16 14 21 21 H 1.48491 * 109.47096 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.46917 * 120.00014 * 20 18 16 23 23 H 1.48498 * 109.47013 * 239.99804 * 20 18 16 24 24 C 1.53006 * 109.46988 * 275.00347 * 14 13 11 25 25 F 1.39902 * 109.46993 * 59.99793 * 24 14 13 26 26 F 1.39897 * 109.47040 * 180.02562 * 24 14 13 27 27 F 1.39896 * 109.46597 * 299.99878 * 24 14 13 28 28 H 1.09003 * 109.47209 * 96.32544 * 1 2 3 29 29 H 1.08992 * 109.47279 * 216.33181 * 1 2 3 30 30 H 1.09005 * 109.46643 * 336.33349 * 1 2 3 31 31 H 1.08999 * 109.47462 * 359.97438 * 5 4 3 32 32 H 1.09005 * 109.46958 * 299.99429 * 6 5 4 33 33 H 1.09003 * 109.47431 * 179.97438 * 6 5 4 34 34 H 1.08999 * 109.47146 * 59.99357 * 6 5 4 35 35 H 1.08999 * 109.46893 * 300.00095 * 7 5 4 36 36 H 1.09002 * 109.47136 * 59.99739 * 7 5 4 37 37 H 1.08993 * 109.47067 * 180.02562 * 7 5 4 38 38 H 1.07992 * 120.53675 * 180.27481 * 9 8 4 39 39 H 0.96989 * 120.00164 * 0.02562 * 13 11 10 40 40 H 0.97001 * 120.00314 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1785 1.1383 0.0000 4 6 3.4971 1.1481 0.0005 5 6 4.2167 2.4722 0.0011 6 6 5.0934 2.5757 1.2506 7 6 5.0944 2.5761 -1.2479 8 7 4.2061 0.0361 -0.0043 9 6 3.6163 -1.1463 0.0012 10 6 2.2179 -1.2052 0.0005 11 6 1.5119 -2.5041 0.0002 12 8 0.3020 -2.5381 -0.1117 13 7 2.2099 -3.6505 0.1237 14 6 1.5103 -4.9377 0.1228 15 1 0.6566 -4.8867 -0.5530 16 6 2.4515 -6.0206 -0.3378 17 1 3.4690 -5.7746 -0.6037 18 6 2.0136 -7.3253 -0.4208 19 7 0.7745 -7.6248 -0.0975 20 14 3.1806 -8.6678 -0.9910 21 1 4.5082 -8.0746 -1.2921 22 1 3.3244 -9.6864 0.0800 23 1 2.6367 -9.3096 -2.2147 24 6 1.0223 -5.2540 1.5380 25 9 0.1485 -4.2485 1.9655 26 9 0.3548 -6.4834 1.5372 27 9 2.1181 -5.3193 2.4053 28 1 -0.3634 -0.1132 -1.0214 29 1 -0.3633 -0.8278 0.6088 30 1 -0.3633 0.9413 0.4125 31 1 3.4873 3.2822 0.0005 32 1 4.4681 2.5017 2.1404 33 1 5.6142 3.5333 1.2508 34 1 5.8228 1.7657 1.2508 35 1 5.8238 1.7661 -1.2477 36 1 4.4698 2.5023 -2.1381 37 1 5.6152 3.5335 -1.2473 38 1 4.2038 -2.0525 0.0017 39 1 3.1752 -3.6232 0.2132 40 1 0.4664 -8.5428 -0.1555 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928797815.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:07 Heat of formation + Delta-G solvation = -136.239841 kcal Electronic energy + Delta-G solvation = -29308.221890 eV Core-core repulsion = 24708.626570 eV Total energy + Delta-G solvation = -4599.595320 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.43704 -46.09362 -45.69654 -41.37972 -38.99355 -35.88555 -35.05349 -34.16803 -32.73155 -31.80232 -29.23775 -27.78063 -27.37312 -25.20976 -24.63631 -23.37143 -22.03156 -20.62694 -20.15013 -18.14326 -17.96585 -16.93050 -16.79425 -16.71074 -16.26357 -15.64165 -15.40699 -15.01532 -14.58429 -14.47334 -14.19749 -14.05872 -13.39284 -13.25000 -13.11945 -13.00563 -12.73556 -12.63941 -12.49071 -12.37513 -12.34485 -12.29166 -12.08444 -11.94723 -11.86497 -11.42135 -11.29925 -11.23114 -11.13841 -10.93369 -10.90249 -10.55398 -10.45987 -9.75743 -9.43598 -9.34787 -9.26927 -8.81630 -8.42962 -6.32140 -4.56796 0.47595 1.00416 3.07538 3.13559 3.20749 3.23768 3.48993 3.68140 3.79926 3.96310 4.14234 4.37941 4.47039 4.76274 4.77922 4.85113 4.87424 4.90837 5.07792 5.34046 5.43391 5.49681 5.61045 5.63955 5.71831 5.73908 5.76952 5.77972 5.87526 6.01098 6.02962 6.10179 6.22575 6.43444 6.78217 6.91664 6.97655 7.34488 7.54045 7.97785 8.10217 8.38929 8.63066 9.11562 10.59501 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.017768 B = 0.003486 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.461077 B = 8030.704923 C = 8771.462790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.234 3.766 3 N -0.525 5.525 4 C 0.338 3.662 5 C -0.028 4.028 6 C -0.141 4.141 7 C -0.141 4.141 8 N -0.521 5.521 9 C 0.186 3.814 10 C -0.241 4.241 11 C 0.559 3.441 12 O -0.520 6.520 13 N -0.703 5.703 14 C 0.246 3.754 15 H 0.089 0.911 16 C -0.554 4.554 17 H 0.079 0.921 18 C 0.066 3.934 19 N -0.838 5.838 20 Si 0.916 3.084 21 H -0.269 1.269 22 H -0.279 1.279 23 H -0.279 1.279 24 C 0.417 3.583 25 F -0.218 7.218 26 F -0.135 7.135 27 F -0.209 7.209 28 H 0.090 0.910 29 H 0.111 0.889 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.053 0.947 37 H 0.065 0.935 38 H 0.174 0.826 39 H 0.397 0.603 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.110 14.823 0.032 16.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.088 3.912 3 N -0.240 5.240 4 C 0.072 3.928 5 C -0.048 4.048 6 C -0.199 4.199 7 C -0.199 4.199 8 N -0.235 5.235 9 C 0.019 3.981 10 C -0.248 4.248 11 C 0.344 3.656 12 O -0.397 6.397 13 N -0.352 5.352 14 C 0.140 3.860 15 H 0.107 0.893 16 C -0.591 4.591 17 H 0.097 0.903 18 C -0.143 4.143 19 N -0.471 5.471 20 Si 0.742 3.258 21 H -0.193 1.193 22 H -0.205 1.205 23 H -0.205 1.205 24 C 0.361 3.639 25 F -0.200 7.200 26 F -0.116 7.116 27 F -0.191 7.191 28 H 0.108 0.892 29 H 0.129 0.871 30 H 0.091 0.909 31 H 0.114 0.886 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.191 0.809 39 H 0.232 0.768 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.524 15.463 -0.012 16.420 hybrid contribution 0.520 -1.748 0.125 1.828 sum 6.044 13.715 0.113 14.988 Atomic orbital electron populations 1.21099 0.86488 1.04376 1.04837 1.21994 0.98131 0.86322 0.84733 1.68240 1.09421 1.29898 1.16411 1.23346 0.86606 0.94692 0.88195 1.20002 0.96978 0.90373 0.97440 1.21796 0.99587 1.02688 0.95819 1.21796 0.99580 1.02685 0.95814 1.68168 1.41209 0.98318 1.15823 1.23528 0.91067 0.96393 0.87091 1.21762 0.96227 0.96664 1.10192 1.17776 0.87148 0.83152 0.77527 1.90739 1.13085 1.86739 1.49183 1.46001 1.10777 1.05905 1.72530 1.19807 0.96804 0.80805 0.88542 0.89349 1.20895 0.98138 0.91080 1.48987 0.90299 1.25078 0.95950 0.99038 0.94268 1.70400 1.15243 1.20243 1.41212 0.86142 0.80396 0.80784 0.78448 1.19345 1.20502 1.20509 1.23119 0.74679 0.75207 0.90931 1.93069 1.71784 1.62876 1.92234 1.93412 1.80765 1.41304 1.96153 1.92994 1.55916 1.96390 1.73765 0.89151 0.87123 0.90926 0.88583 0.92736 0.91585 0.91280 0.91275 0.92755 0.91595 0.80919 0.76804 0.92053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.57 8.99 36.00 0.32 -1.25 16 2 C 0.23 3.61 6.86 -81.82 -0.56 3.05 16 3 N -0.53 -7.69 10.22 -6.68 -0.07 -7.75 16 4 C 0.34 4.52 6.34 -157.07 -1.00 3.53 16 5 C -0.03 -0.28 3.25 -91.77 -0.30 -0.57 16 6 C -0.14 -1.22 9.09 37.15 0.34 -0.88 16 7 C -0.14 -1.21 9.08 37.16 0.34 -0.88 16 8 N -0.52 -7.12 9.77 -10.39 -0.10 -7.22 16 9 C 0.19 2.58 10.80 -16.77 -0.18 2.40 16 10 C -0.24 -3.83 5.91 -104.69 -0.62 -4.44 16 11 C 0.56 10.52 7.26 -12.33 -0.09 10.43 16 12 O -0.52 -11.06 12.11 5.32 0.06 -10.99 16 13 N -0.70 -13.55 4.94 -55.88 -0.28 -13.83 16 14 C 0.25 5.79 2.21 -69.08 -0.15 5.64 16 15 H 0.09 2.32 7.58 -51.93 -0.39 1.92 16 16 C -0.55 -13.50 8.46 -34.45 -0.29 -13.79 16 17 H 0.08 1.81 7.74 -52.48 -0.41 1.40 16 18 C 0.07 1.65 5.20 -17.82 -0.09 1.56 16 19 N -0.84 -22.22 9.50 55.43 0.53 -21.69 16 20 Si 0.92 19.48 29.54 -169.99 -5.02 14.46 16 21 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 22 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 23 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 24 C 0.42 10.27 2.81 37.16 0.10 10.38 16 25 F -0.22 -5.28 15.67 2.25 0.04 -5.25 16 26 F -0.14 -3.63 12.91 2.25 0.03 -3.60 16 27 F -0.21 -4.98 16.94 2.25 0.04 -4.94 16 28 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 29 H 0.11 1.78 5.96 -51.93 -0.31 1.47 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.10 0.90 8.09 -51.93 -0.42 0.48 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.65 8.01 -51.93 -0.42 0.23 16 35 H 0.07 0.64 8.00 -51.93 -0.42 0.23 16 36 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.17 1.96 6.58 -52.49 -0.35 1.61 16 39 H 0.40 6.52 6.71 -40.82 -0.27 6.24 16 40 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 345.03 15.07 5.20 5.20 Total: -1.00 -28.88 345.03 -6.40 -35.29 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -4.65 Total: 5.17 kcal Atomic # 6 Polarization: 17.34 SS G_CDS: -2.18 Total: 15.17 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: 0.08 Total: -50.49 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.06 Total: -10.99 kcal Atomic # 9 Polarization: -13.89 SS G_CDS: 0.10 Total: -13.79 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.02 Total: 14.46 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -28.88 -6.40 -35.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928797815.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.952 kcal (2) G-P(sol) polarization free energy of solvation -28.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds