Wall clock time and date at job start Tue Mar 31 2020 15:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32165 * 120.53903 * 2 1 4 4 C 1.31859 * 120.96418 * 179.97438 * 3 2 1 5 5 C 1.50698 * 118.94688 * 180.02562 * 4 3 2 6 6 C 1.52994 * 109.47468 * 119.99950 * 5 4 3 7 7 C 1.53009 * 109.46827 * 239.99754 * 5 4 3 8 8 N 1.31878 * 122.09724 * 0.27300 * 4 3 2 9 9 C 1.32140 * 120.96798 * 359.44072 * 8 4 3 10 10 C 1.39926 * 120.53568 * 179.97438 * 2 1 3 11 11 C 1.47838 * 120.93946 * 0.04313 * 10 2 1 12 12 O 1.21551 * 119.99524 * 6.05740 * 11 10 2 13 13 N 1.34779 * 119.99802 * 186.04947 * 11 10 2 14 14 C 1.46505 * 119.99686 * 180.02562 * 13 11 10 15 15 H 1.08999 * 109.46813 * 34.99860 * 14 13 11 16 16 C 1.50690 * 109.47178 * 155.00205 * 14 13 11 17 17 H 1.08005 * 119.99967 * 359.97438 * 16 14 13 18 18 C 1.37872 * 120.00412 * 180.02562 * 16 14 13 19 19 N 1.31518 * 119.99833 * 359.97438 * 18 16 14 20 20 Si 1.86802 * 120.00329 * 180.02562 * 18 16 14 21 21 H 1.48491 * 109.47096 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.46917 * 120.00014 * 20 18 16 23 23 H 1.48498 * 109.47013 * 239.99804 * 20 18 16 24 24 C 1.53006 * 109.46988 * 275.00347 * 14 13 11 25 25 F 1.39902 * 109.46993 * 59.99793 * 24 14 13 26 26 F 1.39897 * 109.47040 * 180.02562 * 24 14 13 27 27 F 1.39896 * 109.46597 * 299.99878 * 24 14 13 28 28 H 1.09003 * 109.47209 * 96.32544 * 1 2 3 29 29 H 1.08992 * 109.47279 * 216.33181 * 1 2 3 30 30 H 1.09005 * 109.46643 * 336.33349 * 1 2 3 31 31 H 1.08999 * 109.47462 * 359.97438 * 5 4 3 32 32 H 1.09005 * 109.46958 * 299.99429 * 6 5 4 33 33 H 1.09003 * 109.47431 * 179.97438 * 6 5 4 34 34 H 1.08999 * 109.47146 * 59.99357 * 6 5 4 35 35 H 1.08999 * 109.46893 * 300.00095 * 7 5 4 36 36 H 1.09002 * 109.47136 * 59.99739 * 7 5 4 37 37 H 1.08993 * 109.47067 * 180.02562 * 7 5 4 38 38 H 1.07992 * 120.53675 * 180.27481 * 9 8 4 39 39 H 0.96989 * 120.00164 * 0.02562 * 13 11 10 40 40 H 0.97001 * 120.00314 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1785 1.1383 0.0000 4 6 3.4971 1.1481 0.0005 5 6 4.2167 2.4722 0.0011 6 6 5.0934 2.5757 1.2506 7 6 5.0944 2.5761 -1.2479 8 7 4.2061 0.0361 -0.0043 9 6 3.6163 -1.1463 0.0012 10 6 2.2179 -1.2052 0.0005 11 6 1.5119 -2.5041 0.0002 12 8 0.3020 -2.5381 -0.1117 13 7 2.2099 -3.6505 0.1237 14 6 1.5103 -4.9377 0.1228 15 1 0.6566 -4.8867 -0.5530 16 6 2.4515 -6.0206 -0.3378 17 1 3.4690 -5.7746 -0.6037 18 6 2.0136 -7.3253 -0.4208 19 7 0.7745 -7.6248 -0.0975 20 14 3.1806 -8.6678 -0.9910 21 1 4.5082 -8.0746 -1.2921 22 1 3.3244 -9.6864 0.0800 23 1 2.6367 -9.3096 -2.2147 24 6 1.0223 -5.2540 1.5380 25 9 0.1485 -4.2485 1.9655 26 9 0.3548 -6.4834 1.5372 27 9 2.1181 -5.3193 2.4053 28 1 -0.3634 -0.1132 -1.0214 29 1 -0.3633 -0.8278 0.6088 30 1 -0.3633 0.9413 0.4125 31 1 3.4873 3.2822 0.0005 32 1 4.4681 2.5017 2.1404 33 1 5.6142 3.5333 1.2508 34 1 5.8228 1.7657 1.2508 35 1 5.8238 1.7661 -1.2477 36 1 4.4698 2.5023 -2.1381 37 1 5.6152 3.5335 -1.2473 38 1 4.2038 -2.0525 0.0017 39 1 3.1752 -3.6232 0.2132 40 1 0.4664 -8.5428 -0.1555 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928797815.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:07 Heat of formation + Delta-G solvation = -153.426124 kcal Electronic energy + Delta-G solvation = -29308.967143 eV Core-core repulsion = 24708.626570 eV Total energy + Delta-G solvation = -4600.340573 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.42638 -48.06305 -47.73395 -42.53096 -40.47664 -36.94099 -36.53358 -35.42642 -34.45915 -32.97572 -30.76153 -29.19484 -28.03885 -26.65033 -26.26982 -24.46405 -23.71032 -22.04164 -21.33904 -19.75008 -19.20617 -18.78722 -18.66678 -18.57254 -17.55186 -17.08918 -16.83116 -16.60718 -16.18672 -15.50108 -15.25514 -15.17511 -15.00517 -14.96449 -14.55933 -14.46663 -14.32493 -14.28889 -14.19697 -14.03572 -13.89552 -13.66195 -13.44953 -13.16180 -12.94896 -12.90921 -12.76188 -12.64860 -12.25491 -12.17476 -12.15237 -11.86946 -11.67229 -11.57295 -10.79921 -10.70938 -10.61943 -10.43664 -10.11837 -8.22330 -6.52900 -0.69698 -0.13188 1.46471 1.48643 1.60668 1.68830 1.98960 2.37342 2.49210 2.62346 2.67815 2.87820 2.93992 3.25561 3.53705 3.71395 3.79613 3.85440 3.89948 4.05221 4.17664 4.17934 4.42729 4.50028 4.64641 4.74066 4.83993 4.86519 4.88031 4.96026 5.00362 5.11570 5.25006 5.34422 5.36518 5.43429 5.50515 5.63647 5.77313 6.49834 6.55691 6.88235 7.09470 7.22110 8.70445 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.017768 B = 0.003486 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.461077 B = 8030.704923 C = 8771.462790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.229 3.771 3 N -0.533 5.533 4 C 0.337 3.663 5 C -0.030 4.030 6 C -0.136 4.136 7 C -0.136 4.136 8 N -0.523 5.523 9 C 0.196 3.804 10 C -0.259 4.259 11 C 0.561 3.439 12 O -0.550 6.550 13 N -0.697 5.697 14 C 0.254 3.746 15 H 0.056 0.944 16 C -0.561 4.561 17 H 0.095 0.905 18 C 0.017 3.983 19 N -0.873 5.873 20 Si 0.981 3.019 21 H -0.254 1.254 22 H -0.283 1.283 23 H -0.279 1.279 24 C 0.413 3.587 25 F -0.218 7.218 26 F -0.150 7.150 27 F -0.203 7.203 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.104 0.896 32 H 0.045 0.955 33 H 0.092 0.908 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.046 0.954 37 H 0.091 0.909 38 H 0.198 0.802 39 H 0.412 0.588 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.495 16.173 -0.293 18.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.083 3.917 3 N -0.248 5.248 4 C 0.071 3.929 5 C -0.050 4.050 6 C -0.194 4.194 7 C -0.194 4.194 8 N -0.236 5.236 9 C 0.029 3.971 10 C -0.266 4.266 11 C 0.347 3.653 12 O -0.429 6.429 13 N -0.348 5.348 14 C 0.147 3.853 15 H 0.073 0.927 16 C -0.598 4.598 17 H 0.113 0.887 18 C -0.188 4.188 19 N -0.507 5.507 20 Si 0.805 3.195 21 H -0.178 1.178 22 H -0.208 1.208 23 H -0.204 1.204 24 C 0.357 3.643 25 F -0.200 7.200 26 F -0.131 7.131 27 F -0.185 7.185 28 H 0.111 0.889 29 H 0.107 0.893 30 H 0.110 0.890 31 H 0.123 0.877 32 H 0.064 0.936 33 H 0.111 0.889 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.110 0.890 38 H 0.214 0.786 39 H 0.249 0.751 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.943 16.854 -0.337 18.634 hybrid contribution -0.224 -2.049 0.250 2.077 sum 7.718 14.804 -0.086 16.696 Atomic orbital electron populations 1.21016 0.86128 1.04443 1.04660 1.22178 0.98672 0.86568 0.84318 1.68344 1.10075 1.29227 1.17151 1.24165 0.86477 0.96045 0.86197 1.20229 0.97378 0.88631 0.98758 1.21779 0.99083 1.03901 0.94623 1.21778 0.99072 1.03890 0.94612 1.68312 1.40889 0.98291 1.16151 1.23898 0.90336 0.97480 0.85382 1.21494 0.97064 0.95052 1.13040 1.18153 0.86882 0.83835 0.76384 1.90729 1.14556 1.87262 1.50365 1.45797 1.11414 1.04737 1.72865 1.19400 0.96069 0.82691 0.87123 0.92670 1.21250 0.98802 0.91261 1.48464 0.88726 1.25954 0.97284 1.01364 0.94246 1.70524 1.17026 1.20606 1.42513 0.85139 0.78959 0.77801 0.77625 1.17777 1.20840 1.20442 1.23310 0.74681 0.74700 0.91627 1.93063 1.71896 1.62768 1.92292 1.93383 1.81132 1.42311 1.96273 1.92990 1.55536 1.96353 1.73651 0.88901 0.89296 0.88992 0.87735 0.93564 0.88950 0.92003 0.91997 0.93518 0.88972 0.78569 0.75069 0.92148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.99 8.99 71.23 0.64 -2.35 16 2 C 0.23 6.93 6.86 42.92 0.29 7.22 16 3 N -0.53 -14.92 10.22 -175.03 -1.79 -16.71 16 4 C 0.34 8.41 6.34 138.70 0.88 9.29 16 5 C -0.03 -0.52 3.25 -11.54 -0.04 -0.56 16 6 C -0.14 -2.00 9.09 71.98 0.65 -1.34 16 7 C -0.14 -1.97 9.08 71.99 0.65 -1.32 16 8 N -0.52 -13.29 9.77 -186.80 -1.82 -15.11 16 9 C 0.20 5.12 10.80 85.07 0.92 6.04 16 10 C -0.26 -8.08 5.91 -19.91 -0.12 -8.19 16 11 C 0.56 21.25 7.26 86.78 0.63 21.88 16 12 O -0.55 -24.08 12.11 -3.87 -0.05 -24.13 16 13 N -0.70 -26.74 4.94 -448.98 -2.22 -28.96 16 14 C 0.25 12.12 2.21 44.24 0.10 12.22 16 15 H 0.06 3.01 7.58 -2.39 -0.02 3.00 16 16 C -0.56 -27.04 8.46 25.60 0.22 -26.83 16 17 H 0.09 4.16 7.74 -2.91 -0.02 4.14 16 18 C 0.02 0.85 5.20 84.65 0.44 1.29 16 19 N -0.87 -46.94 9.50 21.45 0.20 -46.73 16 20 Si 0.98 39.29 29.54 68.60 2.03 41.31 16 21 H -0.25 -9.49 7.11 99.48 0.71 -8.78 16 22 H -0.28 -11.39 7.11 99.48 0.71 -10.69 16 23 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 24 C 0.41 20.63 2.81 71.98 0.20 20.84 16 25 F -0.22 -10.81 15.67 44.97 0.70 -10.10 16 26 F -0.15 -8.21 12.91 44.97 0.58 -7.63 16 27 F -0.20 -9.65 16.94 44.97 0.76 -8.88 16 28 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 29 H 0.09 2.95 5.96 -2.39 -0.01 2.94 16 30 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 31 H 0.10 1.67 8.09 -2.39 -0.02 1.65 16 32 H 0.05 0.75 8.14 -2.38 -0.02 0.74 16 33 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.06 1.01 8.01 -2.39 -0.02 0.99 16 35 H 0.06 1.00 8.00 -2.39 -0.02 0.98 16 36 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.20 4.00 6.58 -2.91 -0.02 3.98 16 39 H 0.41 13.00 6.71 -92.72 -0.62 12.38 16 40 H 0.27 13.72 8.31 -92.71 -0.77 12.95 16 Total: -1.00 -62.06 345.03 4.35 -57.71 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: 0.48 Total: 21.04 kcal Atomic # 6 Polarization: 32.72 SS G_CDS: 5.47 Total: 38.20 kcal Atomic # 7 Polarization: -101.88 SS G_CDS: -5.63 Total: -107.51 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.05 Total: -24.13 kcal Atomic # 9 Polarization: -28.67 SS G_CDS: 2.05 Total: -26.62 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 2.03 Total: 41.31 kcal Total: -62.06 4.35 -57.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928797815.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.718 kcal (2) G-P(sol) polarization free energy of solvation -62.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds