Wall clock time and date at job start Tue Mar 31 2020 15:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32161 * 120.53361 * 2 1 4 4 C 1.31858 * 120.96391 * 180.02562 * 3 2 1 5 5 C 1.50693 * 118.95079 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47205 * 119.99733 * 5 4 3 7 7 C 1.53003 * 109.47242 * 240.00028 * 5 4 3 8 8 N 1.31887 * 122.09744 * 0.27667 * 4 3 2 9 9 C 1.32134 * 120.96107 * 359.43860 * 8 4 3 10 10 C 1.39933 * 120.53683 * 180.02562 * 2 1 3 11 11 C 1.47834 * 120.93786 * 359.97438 * 10 2 1 12 12 O 1.21552 * 120.00050 * 6.05702 * 11 10 2 13 13 N 1.34779 * 119.99288 * 186.05654 * 11 10 2 14 14 C 1.46504 * 119.99316 * 180.02562 * 13 11 10 15 15 H 1.08993 * 109.47162 * 325.00080 * 14 13 11 16 16 C 1.50704 * 109.46754 * 204.99949 * 14 13 11 17 17 H 1.08001 * 120.00235 * 359.97438 * 16 14 13 18 18 C 1.37875 * 119.99753 * 180.02562 * 16 14 13 19 19 N 1.31510 * 120.00179 * 0.02562 * 18 16 14 20 20 Si 1.86799 * 119.99831 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47158 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46964 * 120.00328 * 20 18 16 23 23 H 1.48504 * 109.47219 * 239.99903 * 20 18 16 24 24 C 1.53003 * 109.47168 * 85.00023 * 14 13 11 25 25 F 1.39901 * 109.47150 * 59.99831 * 24 14 13 26 26 F 1.39899 * 109.46930 * 179.97438 * 24 14 13 27 27 F 1.39895 * 109.47107 * 299.99835 * 24 14 13 28 28 H 1.09003 * 109.47362 * 96.32193 * 1 2 3 29 29 H 1.09003 * 109.46874 * 216.32104 * 1 2 3 30 30 H 1.09003 * 109.47396 * 336.31970 * 1 2 3 31 31 H 1.09006 * 109.47148 * 359.97438 * 5 4 3 32 32 H 1.09006 * 109.47102 * 179.97438 * 6 5 4 33 33 H 1.09004 * 109.47317 * 60.00411 * 6 5 4 34 34 H 1.08999 * 109.47423 * 300.00176 * 6 5 4 35 35 H 1.08996 * 109.47348 * 180.02562 * 7 5 4 36 36 H 1.08997 * 109.46719 * 300.00039 * 7 5 4 37 37 H 1.09003 * 109.47027 * 59.99716 * 7 5 4 38 38 H 1.08002 * 120.53544 * 180.25726 * 9 8 4 39 39 H 0.96995 * 120.00751 * 359.97438 * 13 11 10 40 40 H 0.97005 * 120.00362 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1785 1.1383 0.0000 4 6 3.4970 1.1482 -0.0005 5 6 4.2165 2.4723 0.0001 6 6 5.0942 2.5752 1.2491 7 6 5.0933 2.5769 -1.2494 8 7 4.2062 0.0363 -0.0064 9 6 3.6164 -1.1461 -0.0011 10 6 2.2180 -1.2052 -0.0005 11 6 1.5120 -2.5041 -0.0006 12 8 0.3020 -2.5382 -0.1112 13 7 2.2102 -3.6504 0.1221 14 6 1.5107 -4.9377 0.1215 15 1 0.5471 -4.8277 0.6189 16 6 2.3403 -5.9605 0.8540 17 1 3.2935 -5.6799 1.2773 18 6 1.8829 -7.2548 0.9830 19 7 0.7230 -7.5968 0.4663 20 14 2.9116 -8.5228 1.8903 21 1 4.1653 -7.8898 2.3727 22 1 2.1439 -9.0456 3.0490 23 1 3.2430 -9.6411 0.9711 24 6 1.2905 -5.3978 -1.3210 25 9 2.5273 -5.5389 -1.9594 26 9 0.6230 -6.6273 -1.3215 27 9 0.5204 -4.4483 -2.0010 28 1 -0.3634 -0.1132 -1.0214 29 1 -0.3633 -0.8280 0.6087 30 1 -0.3634 0.9411 0.4127 31 1 3.4870 3.2823 0.0005 32 1 5.6150 3.5328 1.2493 33 1 5.8237 1.7654 1.2483 34 1 4.4696 2.5007 2.1392 35 1 5.6141 3.5344 -1.2488 36 1 5.8227 1.7670 -1.2502 37 1 4.4680 2.5036 -2.1392 38 1 4.2039 -2.0524 -0.0018 39 1 3.1758 -3.6233 0.2100 40 1 0.4010 -8.5074 0.5574 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928797816.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:10 Heat of formation + Delta-G solvation = -136.156379 kcal Electronic energy + Delta-G solvation = -29300.124716 eV Core-core repulsion = 24700.533015 eV Total energy + Delta-G solvation = -4599.591701 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.43434 -46.09039 -45.69368 -41.38067 -38.99438 -35.88617 -35.05355 -34.16934 -32.73233 -31.80316 -29.23962 -27.78131 -27.37331 -25.21130 -24.63278 -23.37380 -22.03158 -20.62677 -20.15074 -18.14391 -17.96541 -16.93138 -16.79610 -16.69677 -16.25999 -15.60539 -15.47237 -15.00825 -14.59201 -14.47402 -14.21803 -13.99777 -13.42425 -13.23382 -13.13997 -12.99198 -12.74318 -12.64969 -12.48756 -12.38075 -12.34065 -12.29153 -12.08328 -11.93689 -11.83950 -11.42218 -11.30147 -11.24585 -11.13837 -10.94276 -10.88640 -10.55118 -10.47103 -9.75329 -9.43401 -9.35857 -9.27557 -8.81762 -8.42037 -6.31998 -4.56756 0.47489 1.00339 3.07602 3.13519 3.20787 3.23784 3.49104 3.68238 3.79226 3.96269 4.14261 4.37749 4.47241 4.76246 4.77889 4.85200 4.87278 4.90838 5.07732 5.33973 5.43372 5.49477 5.60822 5.63966 5.71754 5.74398 5.77378 5.77595 5.87244 6.01102 6.02744 6.10372 6.22065 6.42357 6.78158 6.91468 6.97657 7.34516 7.54081 7.97676 8.10187 8.39008 8.63038 9.11605 10.59497 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.017754 B = 0.003463 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.735336 B = 8082.916572 C = 8720.900613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.234 3.766 3 N -0.525 5.525 4 C 0.338 3.662 5 C -0.028 4.028 6 C -0.141 4.141 7 C -0.141 4.141 8 N -0.521 5.521 9 C 0.186 3.814 10 C -0.241 4.241 11 C 0.559 3.441 12 O -0.520 6.520 13 N -0.703 5.703 14 C 0.246 3.754 15 H 0.089 0.911 16 C -0.554 4.554 17 H 0.079 0.921 18 C 0.066 3.934 19 N -0.838 5.838 20 Si 0.916 3.084 21 H -0.269 1.269 22 H -0.279 1.279 23 H -0.279 1.279 24 C 0.417 3.583 25 F -0.209 7.209 26 F -0.135 7.135 27 F -0.217 7.217 28 H 0.090 0.910 29 H 0.110 0.890 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.053 0.947 38 H 0.174 0.826 39 H 0.397 0.603 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.121 14.821 -0.158 16.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.088 3.912 3 N -0.240 5.240 4 C 0.072 3.928 5 C -0.048 4.048 6 C -0.199 4.199 7 C -0.199 4.199 8 N -0.235 5.235 9 C 0.019 3.981 10 C -0.248 4.248 11 C 0.344 3.656 12 O -0.397 6.397 13 N -0.352 5.352 14 C 0.140 3.860 15 H 0.106 0.894 16 C -0.591 4.591 17 H 0.097 0.903 18 C -0.143 4.143 19 N -0.471 5.471 20 Si 0.742 3.258 21 H -0.193 1.193 22 H -0.205 1.205 23 H -0.205 1.205 24 C 0.360 3.640 25 F -0.191 7.191 26 F -0.116 7.116 27 F -0.199 7.199 28 H 0.109 0.891 29 H 0.128 0.872 30 H 0.091 0.909 31 H 0.114 0.886 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.072 0.928 38 H 0.191 0.809 39 H 0.232 0.768 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.545 15.456 -0.298 16.423 hybrid contribution 0.528 -1.753 0.054 1.831 sum 6.073 13.703 -0.244 14.991 Atomic orbital electron populations 1.21095 0.86486 1.04284 1.04889 1.21996 0.98129 0.86321 0.84749 1.68237 1.09424 1.29891 1.16411 1.23347 0.86605 0.94693 0.88195 1.20001 0.96980 0.90371 0.97440 1.21794 0.99576 1.02691 0.95812 1.21797 0.99593 1.02686 0.95820 1.68172 1.41200 0.98315 1.15814 1.23523 0.91075 0.96391 0.87098 1.21760 0.96223 0.96665 1.10174 1.17775 0.87191 0.83157 0.77474 1.90740 1.13133 1.86784 1.49085 1.46002 1.10828 1.05874 1.72511 1.19808 0.97932 0.80417 0.87800 0.89354 1.20899 1.06306 0.93854 1.38043 0.90302 1.25076 0.95654 0.98620 0.94983 1.70400 1.18099 1.19903 1.38683 0.86144 0.79909 0.80521 0.79204 1.19350 1.20507 1.20500 1.23122 0.72910 0.76571 0.91351 1.92994 1.45249 1.95999 1.84833 1.93413 1.80281 1.41856 1.96078 1.93071 1.76870 1.66293 1.83698 0.89130 0.87203 0.90923 0.88581 0.91591 0.91281 0.92733 0.91588 0.91276 0.92755 0.80949 0.76801 0.92055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.55 8.99 36.01 0.32 -1.23 16 2 C 0.23 3.60 6.87 -81.81 -0.56 3.04 16 3 N -0.53 -7.67 10.22 -6.67 -0.07 -7.74 16 4 C 0.34 4.52 6.34 -157.06 -1.00 3.53 16 5 C -0.03 -0.28 3.25 -91.78 -0.30 -0.57 16 6 C -0.14 -1.21 9.09 37.15 0.34 -0.87 16 7 C -0.14 -1.23 9.08 37.16 0.34 -0.89 16 8 N -0.52 -7.13 9.77 -10.39 -0.10 -7.23 16 9 C 0.19 2.59 10.80 -16.78 -0.18 2.41 16 10 C -0.24 -3.82 5.91 -104.69 -0.62 -4.44 16 11 C 0.56 10.52 7.26 -12.33 -0.09 10.43 16 12 O -0.52 -11.06 12.11 5.32 0.06 -10.99 16 13 N -0.70 -13.55 4.94 -55.88 -0.28 -13.83 16 14 C 0.25 5.79 2.21 -69.08 -0.15 5.64 16 15 H 0.09 2.31 7.58 -51.93 -0.39 1.92 16 16 C -0.55 -13.51 8.47 -34.44 -0.29 -13.80 16 17 H 0.08 1.81 7.74 -52.49 -0.41 1.40 16 18 C 0.07 1.65 5.20 -17.82 -0.09 1.56 16 19 N -0.84 -22.22 9.50 55.43 0.53 -21.69 16 20 Si 0.92 19.48 29.54 -169.99 -5.02 14.46 16 21 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 22 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 23 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 24 C 0.42 10.28 2.81 37.16 0.10 10.38 16 25 F -0.21 -4.97 16.94 2.25 0.04 -4.94 16 26 F -0.14 -3.63 12.91 2.25 0.03 -3.60 16 27 F -0.22 -5.31 15.68 2.25 0.04 -5.27 16 28 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 29 H 0.11 1.71 5.96 -51.93 -0.31 1.40 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.10 0.89 8.09 -51.93 -0.42 0.47 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.64 8.01 -51.93 -0.42 0.23 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.65 8.00 -51.93 -0.42 0.24 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.17 1.97 6.58 -52.49 -0.35 1.63 16 39 H 0.40 6.52 6.71 -40.82 -0.27 6.25 16 40 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 345.02 15.07 5.20 5.20 Total: -1.00 -28.92 345.02 -6.40 -35.33 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -4.65 Total: 5.12 kcal Atomic # 6 Polarization: 17.36 SS G_CDS: -2.18 Total: 15.18 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: 0.08 Total: -50.49 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.06 Total: -10.99 kcal Atomic # 9 Polarization: -13.91 SS G_CDS: 0.10 Total: -13.81 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.02 Total: 14.46 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -28.92 -6.40 -35.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928797816.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.831 kcal (2) G-P(sol) polarization free energy of solvation -28.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds