Wall clock time and date at job start Tue Mar 31 2020 15:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32161 * 120.53361 * 2 1 4 4 C 1.31858 * 120.96391 * 180.02562 * 3 2 1 5 5 C 1.50693 * 118.95079 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47205 * 119.99733 * 5 4 3 7 7 C 1.53003 * 109.47242 * 240.00028 * 5 4 3 8 8 N 1.31887 * 122.09744 * 0.27667 * 4 3 2 9 9 C 1.32134 * 120.96107 * 359.43860 * 8 4 3 10 10 C 1.39933 * 120.53683 * 180.02562 * 2 1 3 11 11 C 1.47834 * 120.93786 * 359.97438 * 10 2 1 12 12 O 1.21552 * 120.00050 * 6.05702 * 11 10 2 13 13 N 1.34779 * 119.99288 * 186.05654 * 11 10 2 14 14 C 1.46504 * 119.99316 * 180.02562 * 13 11 10 15 15 H 1.08993 * 109.47162 * 325.00080 * 14 13 11 16 16 C 1.50704 * 109.46754 * 204.99949 * 14 13 11 17 17 H 1.08001 * 120.00235 * 359.97438 * 16 14 13 18 18 C 1.37875 * 119.99753 * 180.02562 * 16 14 13 19 19 N 1.31510 * 120.00179 * 0.02562 * 18 16 14 20 20 Si 1.86799 * 119.99831 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47158 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46964 * 120.00328 * 20 18 16 23 23 H 1.48504 * 109.47219 * 239.99903 * 20 18 16 24 24 C 1.53003 * 109.47168 * 85.00023 * 14 13 11 25 25 F 1.39901 * 109.47150 * 59.99831 * 24 14 13 26 26 F 1.39899 * 109.46930 * 179.97438 * 24 14 13 27 27 F 1.39895 * 109.47107 * 299.99835 * 24 14 13 28 28 H 1.09003 * 109.47362 * 96.32193 * 1 2 3 29 29 H 1.09003 * 109.46874 * 216.32104 * 1 2 3 30 30 H 1.09003 * 109.47396 * 336.31970 * 1 2 3 31 31 H 1.09006 * 109.47148 * 359.97438 * 5 4 3 32 32 H 1.09006 * 109.47102 * 179.97438 * 6 5 4 33 33 H 1.09004 * 109.47317 * 60.00411 * 6 5 4 34 34 H 1.08999 * 109.47423 * 300.00176 * 6 5 4 35 35 H 1.08996 * 109.47348 * 180.02562 * 7 5 4 36 36 H 1.08997 * 109.46719 * 300.00039 * 7 5 4 37 37 H 1.09003 * 109.47027 * 59.99716 * 7 5 4 38 38 H 1.08002 * 120.53544 * 180.25726 * 9 8 4 39 39 H 0.96995 * 120.00751 * 359.97438 * 13 11 10 40 40 H 0.97005 * 120.00362 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1785 1.1383 0.0000 4 6 3.4970 1.1482 -0.0005 5 6 4.2165 2.4723 0.0001 6 6 5.0942 2.5752 1.2491 7 6 5.0933 2.5769 -1.2494 8 7 4.2062 0.0363 -0.0064 9 6 3.6164 -1.1461 -0.0011 10 6 2.2180 -1.2052 -0.0005 11 6 1.5120 -2.5041 -0.0006 12 8 0.3020 -2.5382 -0.1112 13 7 2.2102 -3.6504 0.1221 14 6 1.5107 -4.9377 0.1215 15 1 0.5471 -4.8277 0.6189 16 6 2.3403 -5.9605 0.8540 17 1 3.2935 -5.6799 1.2773 18 6 1.8829 -7.2548 0.9830 19 7 0.7230 -7.5968 0.4663 20 14 2.9116 -8.5228 1.8903 21 1 4.1653 -7.8898 2.3727 22 1 2.1439 -9.0456 3.0490 23 1 3.2430 -9.6411 0.9711 24 6 1.2905 -5.3978 -1.3210 25 9 2.5273 -5.5389 -1.9594 26 9 0.6230 -6.6273 -1.3215 27 9 0.5204 -4.4483 -2.0010 28 1 -0.3634 -0.1132 -1.0214 29 1 -0.3633 -0.8280 0.6087 30 1 -0.3634 0.9411 0.4127 31 1 3.4870 3.2823 0.0005 32 1 5.6150 3.5328 1.2493 33 1 5.8237 1.7654 1.2483 34 1 4.4696 2.5007 2.1392 35 1 5.6141 3.5344 -1.2488 36 1 5.8227 1.7670 -1.2502 37 1 4.4680 2.5036 -2.1392 38 1 4.2039 -2.0524 -0.0018 39 1 3.1758 -3.6233 0.2100 40 1 0.4010 -8.5074 0.5574 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928797816.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:09 Heat of formation + Delta-G solvation = -153.355927 kcal Electronic energy + Delta-G solvation = -29300.870544 eV Core-core repulsion = 24700.533015 eV Total energy + Delta-G solvation = -4600.337529 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.42513 -48.06139 -47.73213 -42.53209 -40.47790 -36.94112 -36.53440 -35.42816 -34.46097 -32.97612 -30.76172 -29.19402 -28.03959 -26.65167 -26.26864 -24.46636 -23.71044 -22.04137 -21.33949 -19.75079 -19.20503 -18.80071 -18.66118 -18.56067 -17.53290 -17.08832 -16.88855 -16.60486 -16.16916 -15.46636 -15.29455 -15.14044 -15.02945 -14.95732 -14.58263 -14.46677 -14.32194 -14.29139 -14.17903 -14.03631 -13.89757 -13.66409 -13.44082 -13.12309 -12.96800 -12.94736 -12.72161 -12.65874 -12.26412 -12.17940 -12.15317 -11.86970 -11.67834 -11.56386 -10.81497 -10.70940 -10.62586 -10.43837 -10.10538 -8.22323 -6.53016 -0.69869 -0.13327 1.46331 1.48471 1.60509 1.69248 1.98374 2.37232 2.48974 2.62474 2.67680 2.87741 2.93872 3.25379 3.53132 3.72028 3.79764 3.85493 3.89566 4.05167 4.17570 4.18083 4.42670 4.49918 4.64633 4.74326 4.83903 4.86493 4.88002 4.95984 5.00221 5.11474 5.24890 5.34368 5.36492 5.43370 5.50416 5.63523 5.77187 6.49716 6.55544 6.88104 7.09337 7.21988 8.70297 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.017754 B = 0.003463 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.735336 B = 8082.916572 C = 8720.900613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.229 3.771 3 N -0.533 5.533 4 C 0.337 3.663 5 C -0.030 4.030 6 C -0.136 4.136 7 C -0.136 4.136 8 N -0.522 5.522 9 C 0.196 3.804 10 C -0.259 4.259 11 C 0.561 3.439 12 O -0.550 6.550 13 N -0.697 5.697 14 C 0.254 3.746 15 H 0.056 0.944 16 C -0.561 4.561 17 H 0.094 0.906 18 C 0.017 3.983 19 N -0.872 5.872 20 Si 0.981 3.019 21 H -0.255 1.255 22 H -0.279 1.279 23 H -0.282 1.282 24 C 0.413 3.587 25 F -0.203 7.203 26 F -0.150 7.150 27 F -0.218 7.218 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.105 0.895 32 H 0.091 0.909 33 H 0.061 0.939 34 H 0.046 0.954 35 H 0.092 0.908 36 H 0.061 0.939 37 H 0.045 0.955 38 H 0.197 0.803 39 H 0.412 0.588 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.399 16.209 0.370 18.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.083 3.917 3 N -0.248 5.248 4 C 0.071 3.929 5 C -0.050 4.050 6 C -0.193 4.193 7 C -0.194 4.194 8 N -0.236 5.236 9 C 0.029 3.971 10 C -0.266 4.266 11 C 0.348 3.652 12 O -0.429 6.429 13 N -0.348 5.348 14 C 0.147 3.853 15 H 0.073 0.927 16 C -0.598 4.598 17 H 0.112 0.888 18 C -0.188 4.188 19 N -0.506 5.506 20 Si 0.805 3.195 21 H -0.178 1.178 22 H -0.204 1.204 23 H -0.208 1.208 24 C 0.357 3.643 25 F -0.185 7.185 26 F -0.131 7.131 27 F -0.200 7.200 28 H 0.108 0.892 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.123 0.877 32 H 0.110 0.890 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.111 0.889 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.213 0.787 39 H 0.249 0.751 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.856 16.884 0.232 18.624 hybrid contribution -0.177 -2.069 -0.143 2.082 sum 7.679 14.815 0.089 16.687 Atomic orbital electron populations 1.21020 0.86077 1.04580 1.04552 1.22188 0.98694 0.86541 0.84299 1.68344 1.10065 1.29226 1.17136 1.24167 0.86487 0.96035 0.86196 1.20228 0.97381 0.88631 0.98751 1.21776 0.99069 1.03890 0.94612 1.21780 0.99088 1.03894 0.94637 1.68315 1.40890 0.98287 1.16148 1.23884 0.90364 0.97465 0.85435 1.21492 0.97039 0.95073 1.13018 1.18151 0.86921 0.83840 0.76328 1.90729 1.14593 1.87308 1.50278 1.45798 1.11473 1.04702 1.72843 1.19402 0.96938 0.82212 0.86733 0.92652 1.21247 1.06780 0.94019 1.37742 0.88790 1.25948 0.96586 1.00667 0.95624 1.70523 1.19731 1.20256 1.40124 0.85143 0.78808 0.77833 0.77756 1.17828 1.20428 1.20809 1.23309 0.72907 0.76091 0.92010 1.92992 1.44761 1.95964 1.84781 1.93384 1.80655 1.42859 1.96195 1.93064 1.76982 1.66209 1.83784 0.89248 0.89016 0.88880 0.87714 0.88974 0.92009 0.93456 0.88940 0.92025 0.93610 0.78671 0.75070 0.92141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.96 8.99 71.24 0.64 -2.32 16 2 C 0.23 6.91 6.87 42.92 0.29 7.21 16 3 N -0.53 -14.88 10.22 -175.02 -1.79 -16.67 16 4 C 0.34 8.41 6.34 138.70 0.88 9.29 16 5 C -0.03 -0.52 3.25 -11.54 -0.04 -0.56 16 6 C -0.14 -1.96 9.09 71.98 0.65 -1.31 16 7 C -0.14 -2.01 9.08 71.98 0.65 -1.36 16 8 N -0.52 -13.33 9.77 -186.79 -1.82 -15.16 16 9 C 0.20 5.14 10.80 85.07 0.92 6.06 16 10 C -0.26 -8.07 5.91 -19.91 -0.12 -8.19 16 11 C 0.56 21.25 7.26 86.78 0.63 21.88 16 12 O -0.55 -24.07 12.11 -3.88 -0.05 -24.11 16 13 N -0.70 -26.75 4.94 -448.98 -2.22 -28.97 16 14 C 0.25 12.12 2.21 44.25 0.10 12.22 16 15 H 0.06 3.02 7.58 -2.39 -0.02 3.00 16 16 C -0.56 -27.09 8.47 25.60 0.22 -26.87 16 17 H 0.09 4.15 7.74 -2.91 -0.02 4.13 16 18 C 0.02 0.87 5.20 84.65 0.44 1.31 16 19 N -0.87 -46.90 9.50 21.45 0.20 -46.70 16 20 Si 0.98 39.32 29.54 68.60 2.03 41.35 16 21 H -0.25 -9.53 7.11 99.48 0.71 -8.83 16 22 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 23 H -0.28 -11.38 7.11 99.48 0.71 -10.68 16 24 C 0.41 20.63 2.81 71.98 0.20 20.83 16 25 F -0.20 -9.60 16.94 44.97 0.76 -8.84 16 26 F -0.15 -8.21 12.91 44.97 0.58 -7.63 16 27 F -0.22 -10.85 15.68 44.97 0.70 -10.14 16 28 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 29 H 0.09 2.94 5.96 -2.39 -0.01 2.93 16 30 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.10 1.67 8.09 -2.38 -0.02 1.65 16 32 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 33 H 0.06 1.00 8.01 -2.39 -0.02 0.98 16 34 H 0.05 0.75 8.14 -2.39 -0.02 0.74 16 35 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.06 1.01 8.00 -2.39 -0.02 0.99 16 37 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.20 4.03 6.58 -2.91 -0.02 4.01 16 39 H 0.41 13.02 6.71 -92.71 -0.62 12.40 16 40 H 0.27 13.71 8.31 -92.70 -0.77 12.94 16 Total: -1.00 -62.03 345.02 4.35 -57.68 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: 0.48 Total: 21.00 kcal Atomic # 6 Polarization: 32.72 SS G_CDS: 5.47 Total: 38.19 kcal Atomic # 7 Polarization: -101.87 SS G_CDS: -5.63 Total: -107.50 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -0.05 Total: -24.11 kcal Atomic # 9 Polarization: -28.66 SS G_CDS: 2.05 Total: -26.61 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 2.03 Total: 41.35 kcal Total: -62.03 4.35 -57.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928797816.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.678 kcal (2) G-P(sol) polarization free energy of solvation -62.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds