Wall clock time and date at job start Tue Mar 31 2020 16:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34859 * 125.96708 * 2 1 4 4 N 1.36310 * 106.68729 * 180.02562 * 3 2 1 5 5 C 1.35693 * 107.60938 * 359.94532 * 4 3 2 6 6 N 1.30094 * 108.55157 * 0.02562 * 5 4 3 7 7 C 1.51046 * 124.06009 * 179.97438 * 5 4 3 8 8 C 1.53393 * 108.21108 * 16.00183 * 7 5 4 9 9 H 1.09004 * 109.50855 * 71.11455 * 8 7 5 10 10 C 1.50703 * 109.54884 * 191.22798 * 8 7 5 11 11 O 1.21286 * 119.99852 * 119.78761 * 10 8 7 12 12 N 1.34779 * 119.99979 * 299.79415 * 10 8 7 13 13 C 1.46501 * 119.99898 * 179.97438 * 12 10 8 14 14 H 1.09000 * 109.46900 * 34.99637 * 13 12 10 15 15 C 1.50696 * 109.46927 * 154.99885 * 13 12 10 16 16 H 1.07994 * 120.00044 * 359.97438 * 15 13 12 17 17 C 1.37886 * 119.99722 * 180.02562 * 15 13 12 18 18 N 1.31516 * 119.99910 * 359.97438 * 17 15 13 19 19 Si 1.86801 * 119.99776 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47211 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47026 * 119.99780 * 19 17 15 22 22 H 1.48496 * 109.46752 * 239.99712 * 19 17 15 23 23 C 1.53003 * 109.46841 * 275.00098 * 13 12 10 24 24 F 1.39902 * 109.47430 * 60.00139 * 23 13 12 25 25 F 1.39902 * 109.47078 * 180.02562 * 23 13 12 26 26 F 1.39898 * 109.47132 * 299.99925 * 23 13 12 27 27 C 1.53148 * 109.24450 * 311.18185 * 8 7 5 28 28 C 1.46474 * 127.77431 * 179.91740 * 4 3 2 29 29 H 1.09003 * 109.47280 * 89.99748 * 1 2 3 30 30 H 1.08998 * 109.47915 * 209.99799 * 1 2 3 31 31 H 1.09003 * 109.47395 * 330.00313 * 1 2 3 32 32 H 1.08001 * 126.65020 * 0.02562 * 3 2 1 33 33 H 1.09003 * 109.71325 * 256.32622 * 7 5 4 34 34 H 1.08995 * 109.71430 * 135.68496 * 7 5 4 35 35 H 0.96997 * 120.00115 * 359.97438 * 12 10 8 36 36 H 0.97000 * 120.00034 * 179.97438 * 18 17 15 37 37 H 1.08995 * 109.47074 * 309.47153 * 27 8 7 38 38 H 1.09000 * 109.46697 * 189.48272 * 27 8 7 39 39 H 1.09002 * 109.58719 * 77.39775 * 28 4 3 40 40 H 1.09005 * 109.58011 * 317.12294 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2990 1.0915 0.0000 4 7 3.5857 0.6414 -0.0006 5 6 3.5461 -0.7149 0.0003 6 7 2.3012 -1.0927 0.0008 7 6 4.7723 -1.5970 -0.0005 8 6 5.9798 -0.7397 0.3993 9 1 5.9128 -0.4876 1.4576 10 6 7.2506 -1.5086 0.1445 11 8 8.0789 -1.0727 -0.6268 12 7 7.4666 -2.6808 0.7738 13 6 8.7018 -3.4286 0.5257 14 1 9.5244 -2.7303 0.3714 15 6 9.0041 -4.3068 1.7124 16 1 8.3427 -4.3076 2.5661 17 6 10.1259 -5.1087 1.7086 18 7 10.9316 -5.1073 0.6691 19 14 10.5003 -6.1979 3.1792 20 1 9.4467 -6.0173 4.2100 21 1 10.5328 -7.6184 2.7475 22 1 11.8193 -5.8235 3.7493 23 6 8.5299 -4.2978 -0.7216 24 9 8.2492 -3.4824 -1.8233 25 9 9.7092 -5.0123 -0.9582 26 9 7.4740 -5.1939 -0.5237 27 6 5.9841 0.5456 -0.4334 28 6 4.8148 1.4380 -0.0025 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3635 -0.8899 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.9763 2.1222 0.0004 33 1 4.9279 -2.0093 -0.9975 34 1 4.6428 -2.4072 0.7169 35 1 6.8043 -3.0293 1.3909 36 1 11.7209 -5.6711 0.6666 37 1 5.8802 0.2950 -1.4890 38 1 6.9231 1.0767 -0.2769 39 1 5.0005 1.8259 0.9991 40 1 4.7115 2.2675 -0.7021 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928800269.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:41 Heat of formation + Delta-G solvation = -125.080485 kcal Electronic energy + Delta-G solvation = -29444.505170 eV Core-core repulsion = 24845.393756 eV Total energy + Delta-G solvation = -4599.111414 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.38767 -46.04289 -45.65026 -42.34126 -39.46560 -36.37021 -34.74733 -33.46841 -32.54544 -31.61019 -29.33370 -28.30503 -27.09898 -24.64457 -24.17661 -23.15418 -21.35970 -20.48018 -19.80826 -19.14630 -17.60166 -17.04832 -16.81676 -16.67962 -16.58799 -15.86358 -15.74504 -15.09705 -14.85107 -14.54776 -14.21095 -14.05421 -13.80802 -13.49173 -13.25619 -13.00218 -12.94732 -12.61134 -12.53669 -12.44628 -12.38441 -12.31846 -12.04023 -11.89632 -11.83906 -11.71431 -11.34847 -11.18940 -11.16230 -10.89761 -10.83155 -10.44912 -9.96756 -9.70394 -9.54515 -9.33092 -8.78073 -8.36486 -8.24765 -6.28655 -4.52808 1.96784 2.68005 2.97985 3.02582 3.15338 3.22939 3.25997 3.59085 4.14264 4.17332 4.35217 4.46069 4.52216 4.60209 4.84523 4.88729 4.97784 5.03137 5.08814 5.16458 5.25419 5.39615 5.58687 5.61891 5.64545 5.75243 5.80077 5.82904 5.85085 5.94994 6.01820 6.16667 6.26191 6.73357 6.85547 7.06107 7.10194 7.40389 7.58079 8.06955 8.19946 8.44171 8.74183 9.15420 10.62978 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.019791 B = 0.003230 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.437748 B = 8666.747406 C = 8895.307651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.011 4.011 3 C -0.054 4.054 4 N -0.458 5.458 5 C 0.221 3.779 6 N -0.485 5.485 7 C -0.026 4.026 8 C -0.111 4.111 9 H 0.103 0.897 10 C 0.513 3.487 11 O -0.532 6.532 12 N -0.708 5.708 13 C 0.244 3.756 14 H 0.086 0.914 15 C -0.553 4.553 16 H 0.079 0.921 17 C 0.065 3.935 18 N -0.839 5.839 19 Si 0.915 3.085 20 H -0.269 1.269 21 H -0.279 1.279 22 H -0.280 1.280 23 C 0.417 3.583 24 F -0.218 7.218 25 F -0.137 7.137 26 F -0.208 7.208 27 C -0.115 4.115 28 C 0.104 3.896 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.172 0.828 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.400 0.600 36 H 0.268 0.732 37 H 0.082 0.918 38 H 0.102 0.898 39 H 0.086 0.914 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.935 11.742 0.654 17.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.139 4.139 3 C -0.187 4.187 4 N -0.142 5.142 5 C -0.042 4.042 6 N -0.205 5.205 7 C -0.065 4.065 8 C -0.133 4.133 9 H 0.121 0.879 10 C 0.298 3.702 11 O -0.408 6.408 12 N -0.357 5.357 13 C 0.139 3.861 14 H 0.103 0.897 15 C -0.590 4.590 16 H 0.097 0.903 17 C -0.144 4.144 18 N -0.472 5.472 19 Si 0.742 3.258 20 H -0.194 1.194 21 H -0.205 1.205 22 H -0.206 1.206 23 C 0.360 3.640 24 F -0.200 7.200 25 F -0.118 7.118 26 F -0.190 7.190 27 C -0.153 4.153 28 C -0.018 4.018 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.189 0.811 33 H 0.115 0.885 34 H 0.121 0.879 35 H 0.234 0.766 36 H 0.079 0.921 37 H 0.101 0.899 38 H 0.121 0.879 39 H 0.104 0.896 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.284 11.250 -0.018 16.657 hybrid contribution 0.154 -0.030 0.709 0.727 sum -12.129 11.220 0.692 16.538 Atomic orbital electron populations 1.19974 0.87809 1.02402 1.01949 1.20987 0.96371 0.88368 1.08188 1.22234 0.82939 1.00198 1.13321 1.45471 1.06525 1.07447 1.54748 1.23222 0.94696 0.81475 1.04765 1.70268 0.99633 1.30017 1.20564 1.20162 0.85932 0.95523 1.04876 1.21431 0.93605 0.95939 1.02367 0.87938 1.20184 0.87467 0.81745 0.80818 1.90715 1.46318 1.68394 1.35403 1.46099 1.22827 1.21271 1.45475 1.19751 0.84161 0.90950 0.91243 0.89692 1.20916 1.10543 1.26099 1.01422 0.90335 1.25089 0.95771 0.96710 0.96829 1.70406 1.12463 1.37501 1.26841 0.86156 0.78449 0.79811 0.81425 1.19354 1.20515 1.20577 1.23132 0.74086 0.80657 0.86089 1.93068 1.94035 1.73602 1.59312 1.93408 1.44762 1.78880 1.94724 1.92997 1.59609 1.71047 1.95342 1.21722 0.97871 0.94621 1.01084 1.22061 0.82092 0.94402 1.03254 0.91672 0.91286 0.91600 0.81051 0.88483 0.87883 0.76598 0.92125 0.89887 0.87921 0.89601 0.88964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.59 10.42 36.00 0.38 -0.21 16 2 C -0.01 -0.14 7.12 -82.36 -0.59 -0.72 16 3 C -0.05 -0.59 11.55 -16.76 -0.19 -0.78 16 4 N -0.46 -5.27 3.14 -113.67 -0.36 -5.63 16 5 C 0.22 3.06 7.66 -154.99 -1.19 1.87 16 6 N -0.49 -7.44 11.28 -6.66 -0.08 -7.51 16 7 C -0.03 -0.34 5.47 -27.51 -0.15 -0.49 16 8 C -0.11 -1.40 2.54 -91.49 -0.23 -1.64 16 9 H 0.10 1.11 8.12 -51.93 -0.42 0.69 16 10 C 0.51 9.00 6.67 -10.98 -0.07 8.92 16 11 O -0.53 -11.25 14.40 5.55 0.08 -11.17 16 12 N -0.71 -13.35 4.89 -54.93 -0.27 -13.62 16 13 C 0.24 5.80 2.21 -69.08 -0.15 5.64 16 14 H 0.09 2.26 7.58 -51.93 -0.39 1.86 16 15 C -0.55 -13.63 8.46 -34.44 -0.29 -13.92 16 16 H 0.08 1.83 7.74 -52.49 -0.41 1.42 16 17 C 0.06 1.65 5.20 -17.82 -0.09 1.56 16 18 N -0.84 -22.53 9.50 55.43 0.53 -22.00 16 19 Si 0.92 19.71 29.54 -169.99 -5.02 14.69 16 20 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 21 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 22 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 23 C 0.42 10.37 2.81 37.16 0.10 10.48 16 24 F -0.22 -5.36 15.68 2.25 0.04 -5.32 16 25 F -0.14 -3.72 12.91 2.25 0.03 -3.69 16 26 F -0.21 -5.01 16.94 2.25 0.04 -4.97 16 27 C -0.12 -1.26 4.67 -26.51 -0.12 -1.39 16 28 C 0.10 0.90 6.97 -3.91 -0.03 0.87 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.17 1.26 8.06 -52.49 -0.42 0.83 16 33 H 0.10 1.37 8.11 -51.93 -0.42 0.95 16 34 H 0.10 1.27 7.95 -51.93 -0.41 0.85 16 35 H 0.40 6.51 8.26 -40.82 -0.34 6.18 16 36 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 37 H 0.08 1.02 8.12 -51.93 -0.42 0.60 16 38 H 0.10 1.12 7.79 -51.93 -0.40 0.71 16 39 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 342.12 15.07 5.16 5.16 Total: -1.00 -31.64 342.12 -7.38 -39.02 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -4.89 Total: 4.85 kcal Atomic # 6 Polarization: 12.82 SS G_CDS: -2.63 Total: 10.19 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: -0.17 Total: -48.75 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.08 Total: -11.17 kcal Atomic # 9 Polarization: -14.08 SS G_CDS: 0.10 Total: -13.98 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.69 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.64 -7.38 -39.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928800269.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.065 kcal (2) G-P(sol) polarization free energy of solvation -31.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds